mRNA_H-canaliculatus_F_contig13467.2816.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13467.2816.1
Unique NamemRNA_H-canaliculatus_F_contig13467.2816.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13467.2816.1 vs. uniprot
Match: A0A6H5JZ76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ76_9PHAE)

HSP 1 Score: 388 bits (997), Expect = 1.800e-130
Identity = 184/196 (93.88%), Postives = 191/196 (97.45%), Query Frame = 1 
Query:    1 HLTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAEDAGLPKEEELAGMSIAQLKAHLNKYSISSRDCVERSDLEEKVRDTLIRTVPELLATKYDLLANICHDSPPGQGKEGQTDPLSAGCYRAHVQNKSTEQW 588
            HLTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAED GLPKEE+LAGMSI QLKAHLNKYSISS +CVER +LEEKVRDTLI+TVPELLATKY+LL N+CHDSPPGQGKEGQTDPLSAGCYRAHVQNK+TEQW
Sbjct:  387 HLTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAEDPGLPKEEDLAGMSIKQLKAHLNKYSISSEECVERRELEEKVRDTLIKTVPELLATKYNLLVNVCHDSPPGQGKEGQTDPLSAGCYRAHVQNKATEQW 582
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13467.2816.1 vs. uniprot
Match: A0A835Z9Q1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q1_9STRA)

HSP 1 Score: 252 bits (643), Expect = 7.530e-79
Identity = 123/196 (62.76%), Postives = 149/196 (76.02%), Query Frame = 1 
Query:    1 HLTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAEDAGLPKEEELAGMSIAQLKAHLNKYSISSRDCVERSDLEEKVRDTLIRTVPELLATKYDLLANICHDSPPGQGKEGQTDPLSAGCYRAHVQNKSTEQW 588
            HL LDIP TPLFKDSQGGNIIPQ+ LF VL K++G+ +TD V+ G L+RKRY LRRLP YLIFHLARFTKNNF+VEKNPTIVNFPVKNLELKD++ ++             S+ +LKA LN + ++  D VER++LE +VRD L  ++     +KYDL ANICHDSPPGQGKEGQ DPL  G YR HVQN+++EQW
Sbjct:  265 HLRLDIPRTPLFKDSQGGNIIPQVSLFTVLSKFDGQTYTDAVRAGQLSRKRYTLRRLPPYLIFHLARFTKNNFFVEKNPTIVNFPVKNLELKDYVGSK-------------SVKELKAVLNAHGVAHADVVERAELEARVRDVLGASL-----SKYDLCANICHDSPPGQGKEGQMDPLQGGSYRVHVQNRASEQW 442
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13467.2816.1 vs. uniprot
Match: A0A7S2CAK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CAK8_9STRA)

HSP 1 Score: 233 bits (595), Expect = 9.590e-75
Identity = 108/186 (58.06%), Postives = 138/186 (74.19%), Query Frame = 1 
Query:   40 DSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAE---DAGLPKEEELAGMSIAQLKAHLNKYSISSRDCVERSDLEEKVRDTLIRTVPELLATKYDLLANICHDSPPGQGKEGQTDPLSAGCYRAHVQNKSTEQW 588
            D +G N+IPQ+PLF VL++YNG  +TDV+K G   RKRY L RLP+++IFHL+RFTKNNFY+EKNPTIV FPVKNLE++D++      + G P EEE+  MS+ +L+  L +  ++  DCVE+S L +KV+D ++ T      TKYDLLANICHDSPPGQ KEG   PL AG YR HVQNK+TEQW
Sbjct:    1 DDEGANLIPQVPLFDVLERYNGTKYTDVLKSGYQQRKRYSLTRLPQFIIFHLSRFTKNNFYMEKNPTIVTFPVKNLEMRDYINLTGTGETGFPTEEEVGEMSVKELREILTRQKVNFADCVEKSHLVDKVKDEILET----FVTKYDLLANICHDSPPGQKKEGSVSPLEAGSYRVHVQNKATEQW 182
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BLAST of mRNA_H-canaliculatus_F_contig13467.2816.1 vs. uniprot
Match: X5IAE6_9STRA (Ubiquitin specific peptidase 39 n=1 Tax=Ciliophrys infusionum TaxID=38824 RepID=X5IAE6_9STRA)

HSP 1 Score: 239 bits (610), Expect = 2.240e-72
Identity = 114/196 (58.16%), Postives = 149/196 (76.02%), Query Frame = 1 
Query:    4 LTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLR-AEDAGLPKEEELAGMSIAQLKAHLNKYSISSRDCVERSDLEEKVRDTLIRTVPELLATKYDLLANICHDSPPGQGKEGQTDPLSAGCYRAHVQNKSTEQW 588
            L+L+IP TPLFKDSQGGNIIPQ+PLF+VL+KYNG+ +TD++K G   RKRY L  LP ++IFHL+RFTKNNFY+EKNPTIV FPVKNLEL+++L+  +D   P +EEL  MSI +LKA    + +   + VE+++L E V+  ++    + + TKYDLLANI HDSPPGQ K+ Q  PL AG YR H+QNK+T+QW
Sbjct:  392 LSLEIPPTPLFKDSQGGNIIPQVPLFQVLEKYNGKKYTDILKAGYQQRKRYSLLELPPFIIFHLSRFTKNNFYMEKNPTIVTFPVKNLELREYLKFVDDVSFPSDEELQEMSIGELKAICKAHRVHPGNVVEKAELAEFVKTQVL----DQIITKYDLLANIVHDSPPGQKKDNQMSPLEAGSYRVHLQNKATDQW 583
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13467.2816.1 vs. uniprot
Match: W2PR18_PHYPN (USP domain-containing protein n=14 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PR18_PHYPN)

HSP 1 Score: 233 bits (594), Expect = 4.890e-72
Identity = 118/197 (59.90%), Postives = 150/197 (76.14%), Query Frame = 1 
Query:    4 LTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAEDAGLPKEEELAGMSIAQLKAHLNKYSISSRDCVERSDLEEKVRDTLIRTVPELLATKYDLLANICHDSPPGQGKEG--QTDPLSAGCYRAHVQNKSTEQW 588
            ++LD+P+TPLFKDSQGGNIIPQIPLF VL+KYNG   T V++G    +K Y +  LP YLIFH+ RFT+NNF++EKNPTIVNFPVKNLEL+D+L+  D  LP EEEL   SI +L+A L K++ S+ DCVE++DL EK+   L  T+P    TKY+L+ANICHDSP   G+E   QT+PL+ G YR HVQN++TEQW
Sbjct:  211 MSLDLPSTPLFKDSQGGNIIPQIPLFTVLEKYNGSRVTHVLQGSHRLKKTYQIDSLPAYLIFHVKRFTRNNFFIEKNPTIVNFPVKNLELRDYLKL-DQNLPTEEELREKSIPELRALLRKHNQSTEDCVEKADLVEKI---LRVTLP---CTKYNLVANICHDSPVTTGQEAALQTNPLTEGSYRVHVQNRATEQW 400
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13467.2816.1 vs. uniprot
Match: D0MZT9_PHYIT (U4/U6.U5 tri-snRNP-associated protein, putative n=7 Tax=Phytophthora TaxID=4783 RepID=D0MZT9_PHYIT)

HSP 1 Score: 229 bits (585), Expect = 5.390e-70
Identity = 116/197 (58.88%), Postives = 150/197 (76.14%), Query Frame = 1 
Query:    4 LTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAEDAGLPKEEELAGMSIAQLKAHLNKYSISSRDCVERSDLEEKVRDTLIRTVPELLATKYDLLANICHDSPPGQGKEG--QTDPLSAGCYRAHVQNKSTEQW 588
            + LD+P+TPLFKDSQGGNIIPQIPLF VL+KYNG + T V++G    +K Y +  LP +LIFH+ RFT+NNF++EKNPTIVNFPVKNLEL+D+L+  D  LP EEEL   SI++L++ L K++ S+ DCVE+SDL EK+   L  T P    TK++L+ANICHDSP   G+E   QT+PL+ G YR HVQN++TEQW
Sbjct:  274 MALDLPSTPLFKDSQGGNIIPQIPLFTVLEKYNGSHITHVLQGSHRLKKTYRIDSLPAFLIFHVKRFTRNNFFIEKNPTIVNFPVKNLELRDYLKL-DQSLPSEEELREKSISELRSLLRKHNQSTEDCVEKSDLVEKI---LRVTQP---CTKFNLVANICHDSPVTTGQEAALQTNPLTEGSYRVHVQNRATEQW 463
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13467.2816.1 vs. uniprot
Match: K3W6S9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6S9_GLOUD)

HSP 1 Score: 230 bits (586), Expect = 7.090e-70
Identity = 116/197 (58.88%), Postives = 152/197 (77.16%), Query Frame = 1 
Query:    4 LTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAEDAGLPKEEELAGMSIAQLKAHLNKYSISSRDCVERSDLEEKVRDTLIRTVPELLATKYDLLANICHDSPPGQGKEG--QTDPLSAGCYRAHVQNKSTEQW 588
            ++LD+P+TPLFKDSQGGNIIPQ+PLF VL+KY+G + T V++G    +K Y +  LP Y+IFH+ RFT+NNF++EKNPTIVNFP+KNLEL+++L   D  +P EE L  MSIA L+A L K+S+SS+DCVE++DL EKV   L  TVP   +TKY+L+ANI HDSP   GKE   +T+PL+ G YR HVQN++TEQW
Sbjct:  301 MSLDLPSTPLFKDSQGGNIIPQVPLFTVLEKYDGTHVTHVLQGSQRLKKTYKIESLPPYIIFHVKRFTRNNFFIEKNPTIVNFPIKNLELREYLNL-DGSIPTEE-LGAMSIADLRAILTKHSVSSKDCVEKADLVEKV---LRVTVP---STKYNLIANIVHDSPVTTGKEASLKTNPLTEGSYRVHVQNRATEQW 489
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13467.2816.1 vs. uniprot
Match: A0A833TV06_PHYIN (Ubiquitin carboxyl-terminal hydrolase domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=A0A833TV06_PHYIN)

HSP 1 Score: 229 bits (585), Expect = 1.050e-69
Identity = 116/197 (58.88%), Postives = 150/197 (76.14%), Query Frame = 1 
Query:    4 LTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAEDAGLPKEEELAGMSIAQLKAHLNKYSISSRDCVERSDLEEKVRDTLIRTVPELLATKYDLLANICHDSPPGQGKEG--QTDPLSAGCYRAHVQNKSTEQW 588
            + LD+P+TPLFKDSQGGNIIPQIPLF VL+KYNG + T V++G    +K Y +  LP +LIFH+ RFT+NNF++EKNPTIVNFPVKNLEL+D+L+  D  LP EEEL   SI++L++ L K++ S+ DCVE+SDL EK+   L  T P    TK++L+ANICHDSP   G+E   QT+PL+ G YR HVQN++TEQW
Sbjct:  302 MALDLPSTPLFKDSQGGNIIPQIPLFTVLEKYNGSHITHVLQGSHRLKKTYRIDSLPAFLIFHVKRFTRNNFFIEKNPTIVNFPVKNLELRDYLKL-DQSLPSEEELREKSISELRSLLRKHNQSTEDCVEKSDLVEKI---LRVTQP---CTKFNLVANICHDSPVTTGQEAALQTNPLTEGSYRVHVQNRATEQW 491
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13467.2816.1 vs. uniprot
Match: A0A8K1FFF5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFF5_PYTOL)

HSP 1 Score: 229 bits (585), Expect = 1.070e-69
Identity = 111/197 (56.35%), Postives = 153/197 (77.66%), Query Frame = 1 
Query:    4 LTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAEDAGLPKEEELAGMSIAQLKAHLNKYSISSRDCVERSDLEEKVRDTLIRTVPELLATKYDLLANICHDSPPGQGKEG--QTDPLSAGCYRAHVQNKSTEQW 588
            L+LD+P+TPLFKDSQGGNIIPQ+PLF VL+KY+G + T V++G     K Y ++ LP YLIFH+ RFT+NNF+VEKNPTIVNFPVKNLEL+++++ +D  L  EEELA  S+++L+A L K+ +S +DCVE+ DL +K+ +    T+P   +TKY+L+AN+CHDSP   GKE   +T+PL+ G YR H+QN++TEQW
Sbjct:  303 LSLDLPSTPLFKDSQGGNIIPQVPLFTVLEKYDGNHVTHVLQGSQRLTKTYSIKSLPSYLIFHVKRFTRNNFFVEKNPTIVNFPVKNLELREYVQFDDVVL-SEEELAAKSVSELQAILTKHKVSFKDCVEKRDLVDKIMNV---TIP---STKYNLIANVCHDSPVTTGKETALKTNPLTEGSYRVHLQNRATEQW 492
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13467.2816.1 vs. uniprot
Match: A0A8J4WQ59_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4WQ59_9STRA)

HSP 1 Score: 227 bits (578), Expect = 2.060e-69
Identity = 115/197 (58.38%), Postives = 148/197 (75.13%), Query Frame = 1 
Query:    4 LTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRKRYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAEDAGLPKEEELAGMSIAQLKAHLNKYSISSRDCVERSDLEEKVRDTLIRTVPELLATKYDLLANICHDSPPGQGKEG--QTDPLSAGCYRAHVQNKSTEQW 588
            + LD+P+TPLFKDSQGGNIIPQIPLF VL+KYNG + T +++     +K Y +  LP YLIFH+ RFT+NNF+VEKNPTIVNFPVKNLEL+D+L+  D  LP  EEL   SI++L+  L K+  +S DCVE++DL EK+   L  T+P   +TKY+L+ANICHDSP   G+E   QT+PL+ G YR HVQN++TEQW
Sbjct:  231 MALDLPSTPLFKDSQGGNIIPQIPLFTVLEKYNGSHVTHMLQSSHRLKKTYRIDSLPPYLIFHVKRFTRNNFFVEKNPTIVNFPVKNLELRDYLKL-DQSLPSAEELQNKSISELRTLLRKHKQNSDDCVEKADLVEKI---LRVTLP---STKYNLIANICHDSPVTTGQEAALQTNPLTEGTYRVHVQNRATEQW 420
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13467.2816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ76_9PHAE1.800e-13093.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9Q1_9STRA7.530e-7962.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CAK8_9STRA9.590e-7558.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
X5IAE6_9STRA2.240e-7258.16Ubiquitin specific peptidase 39 n=1 Tax=Ciliophrys... [more]
W2PR18_PHYPN4.890e-7259.90USP domain-containing protein n=14 Tax=Phytophthor... [more]
D0MZT9_PHYIT5.390e-7058.88U4/U6.U5 tri-snRNP-associated protein, putative n=... [more]
K3W6S9_GLOUD7.090e-7058.88Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A833TV06_PHYIN1.050e-6958.88Ubiquitin carboxyl-terminal hydrolase domain-conta... [more]
A0A8K1FFF5_PYTOL1.070e-6956.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J4WQ59_9STRA2.060e-6958.38Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13467contigH-canaliculatus_F_contig13467:79..2353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score395.6
Seed ortholog evalue1.4e-107
Seed eggNOG ortholog2880.D8LCL6
Preferred nameUSP39
KEGG koko:K12847
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008380,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0010498,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016579,GO:0016740,GO:0016787,GO:0019538,GO:0019783,GO:0019787,GO:0019941,GO:0022607,GO:0022613,GO:0022618,GO:0030163,GO:0031146,GO:0031974,GO:0031981,GO:0032446,GO:0034622,GO:0034641,GO:0036211,GO:0036459,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0051603,GO:0065003,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG2026@1,KOG2026@2759
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-03_002420.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons5
Model size591
Cds size591
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13467.2816.1prot_H-canaliculatus_F_contig13467.2816.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13467 79..2353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.8233104-CDS-H-canaliculatus_F_contig13467:78..2681622929086.8233104-CDS-H-canaliculatus_F_contig13467:78..268Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13467 79..268 -
1696845674.3864915-CDS-H-canaliculatus_F_contig13467:78..2681696845674.3864915-CDS-H-canaliculatus_F_contig13467:78..268Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13467 79..268 -
1622929086.8563325-CDS-H-canaliculatus_F_contig13467:698..8191622929086.8563325-CDS-H-canaliculatus_F_contig13467:698..819Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13467 699..819 -
1696845674.4049418-CDS-H-canaliculatus_F_contig13467:698..8191696845674.4049418-CDS-H-canaliculatus_F_contig13467:698..819Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13467 699..819 -
1622929086.873329-CDS-H-canaliculatus_F_contig13467:1115..12191622929086.873329-CDS-H-canaliculatus_F_contig13467:1115..1219Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13467 1116..1219 -
1696845674.4180486-CDS-H-canaliculatus_F_contig13467:1115..12191696845674.4180486-CDS-H-canaliculatus_F_contig13467:1115..1219Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13467 1116..1219 -
1622929086.8896167-CDS-H-canaliculatus_F_contig13467:1627..16861622929086.8896167-CDS-H-canaliculatus_F_contig13467:1627..1686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13467 1628..1686 -
1696845674.4397013-CDS-H-canaliculatus_F_contig13467:1627..16861696845674.4397013-CDS-H-canaliculatus_F_contig13467:1627..1686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13467 1628..1686 -
1622929086.905894-CDS-H-canaliculatus_F_contig13467:2236..23531622929086.905894-CDS-H-canaliculatus_F_contig13467:2236..2353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13467 2237..2353 -
1696845674.452258-CDS-H-canaliculatus_F_contig13467:2236..23531696845674.452258-CDS-H-canaliculatus_F_contig13467:2236..2353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13467 2237..2353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13467.2816.1

>prot_H-canaliculatus_F_contig13467.2816.1 ID=prot_H-canaliculatus_F_contig13467.2816.1|Name=mRNA_H-canaliculatus_F_contig13467.2816.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp
HLTLDIPATPLFKDSQGGNIIPQIPLFKVLDKYNGENWTDVVKGGVLTRK
RYVLRRLPRYLIFHLARFTKNNFYVEKNPTIVNFPVKNLELKDWLRAEDA
GLPKEEELAGMSIAQLKAHLNKYSISSRDCVERSDLEEKVRDTLIRTVPE
LLATKYDLLANICHDSPPGQGKEGQTDPLSAGCYRAHVQNKSTEQW*
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mRNA from alignment at H-canaliculatus_F_contig13467:79..2353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13467.2816.1 ID=mRNA_H-canaliculatus_F_contig13467.2816.1|Name=mRNA_H-canaliculatus_F_contig13467.2816.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2275bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13467:79..2353- (Hapterophycus canaliculatus Oshoro5f female)
CACCTGACGCTGGACATCCCGGCGACGCCTCTCTTCAAGGATTCCCAGGG
AGGGAACATCATCCCCCAGATCCCTCTGTTCAAGGTTCTGGACAAGTACA
ACGGGGAGAACTGGACGGTGAGCTAGATCTCATGACGGATTCTGTCGGTA
GGATCATTGGGAGTGATTTATTTCGGCACCCCGGGTTCCCCCTTCCTCTT
GGTCACGTGGACGGGATTCACCACCTCCGTTTCCGTCTCTTTTCGTTCTT
TTTGAAGAAAGACACCGCTAACAGCGTCGAAAGTACCTCCGGGGGTGCGT
GCGTCTTGCGAGACGTAGCTCGAGGCTTCAATTGAGTCCCAAACAATTGA
GAGTTCATTGTGTATGGTTGCGTTAGTCGTTTTGCGCGTTTCTAGCTCTC
CACTCTGTAACGCGTGCGGTCTGTCTTGGTGAGCGGCCTTTCTATTCTGT
CGCTCGTTAGCTTTATTTCGACCTCTAGGTAGCTTGCGGTGCGTTCTTTT
CTTGTTTAGTCTTGTCCTTTGCAGAGGCACCAGCGTTCCCCGAGTTTTTG
TGTTGAGTTGGACGCAGAACACTAGACAATCCCGGATTGTTTTCAGATAT
CTGTTGTTGTCTCCACGCTTACTGCTCACGCTCTTAACTGTGTCCCTGCG
TGTGTGTATTCTGCCAGGACGTGGTCAAGGGTGGGGTACTGACGCGCAAG
CGCTACGTGCTGAGGCGGTTACCGAGGTGGGAGAGTGGCGTCACAAGCAA
GTGCCCTGATTCTGTGCTGATACTGATGCTGTGGCTGCTGTTGCTGCTGC
AGGCGTCGCCCAGCTCGATATGCGCCTTTAGCGCTTCTGGCAGTTCTCGG
AGCGTAGGCCTGGCATCGTTCTCCGCATCCAGTTGTTTTCGCTTGGCCTC
GTAAGACTGCCCTTCCTCTTTTTACAGAAAAAAAGTCAGCAACACAAGAA
AGGAATACTTGTAATGCTTTCTGAAACCAGTCTCAGGGAGGATCGTGTGA
ATCCCTTCCCTTCCAGCGAACACCATGTTTTGTTTCATTTTTTTTTTTTT
TCCCATCTTTTAGTCGTCGTTACCCACGCTAGAAAGCGCCCGCAGCTGAA
CGATTTCCGCCCGACCCTCGTCCTGCCGCCCCAGGTACCTCATCTTCCAC
CTGGCCCGGTTCACGAAGAACAACTTTTACGTGGAGAAGAACCCGACCAT
CGTCAACTTTCCCGTGAAGAACCTGGAGCTCAAGGACTGTGAGTCGACAT
TCTTGTTCCCCCCCTTGTTTTGTCTCGGCCCCGGCCGGGTAGGGGTCAGC
TATAGGTGGCTCGCTTCGCCTACGCCCGCCTTGGGGATGGCGTGCGGTTA
AGCCGGGTAGCACGTGCCATCACTCACGCCTGTCGGCGGGCAGCGGTGGC
GCCTCCGTCGTTCGCCGTACTAACGCCAGCTGGCATGTGTTCGTGGGTTT
TGTGTGAGCCGTGTGAGCTGCTCCGTTTCCGCATTATTCTCATCTTTTTT
TTTGGCGTTGCTTTGTCGTTTGTGTCTTTCGCAGGGCTGCGAGCAGAAGA
CGCCGGGCTGCCCAAGGAGGAGGAGTTGGCGGGCATGTCGATCGCCCAGC
TCAAGGCGCACCTTAACAAATACTCCATCTCCAGCAGGGACTGTGTCGAA
CGCAGGTGCGACCGTTGTCCCCTCTTTCTCTCTCCCCACACATCTGAGCT
CAAACCCCGACCAAGTGGCTGACACTGTGCTCTGATCGAGCGTCGGAGCC
CCGCTCCGATCGATCAGCAAGCTTCAATAAAGTCGCGATCAAGTAAATCT
GTGCATGTGCGAGCACTGCAATTCTTGCGGGTAAGAGTCTCCCCTTCGTT
TCTTGTTCCTCGTCGTGTTCGCTTTTTCTTTCTCTCGTTCTTTCGACTAT
TAATAGCGCGGGGCGGTCGGCACTCTCGTACCAGCAGAAGCCTTGGCCGC
GGGGCTTCTCACGACCGCAAACGCTTCGGTTCTCGCCTCAGCGTGGTTTT
CAAAGCGTTCTCTTGCCCCAACCCACCTTGCCCCGCCCTGCCTCCCGCCC
GTGTTTCGCCCGCAAATAAAACCCCTACATAACAGTGACCTCGAGGAAAA
GGTGCGCGACACGCTCATCAGGACCGTGCCGGAGTTGCTCGCGACCAAGT
ACGACCTCCTGGCCAACATCTGCCACGACAGTCCCCCCGGCCAGGGCAAG
GAAGGGCAGACGGATCCGCTCTCGGCGGGGTGCTACCGCGCACACGTCCA
GAACAAGTCGACGGAGCAGTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13467:79..2353-

>mRNA_H-canaliculatus_F_contig13467.2816.1 ID=mRNA_H-canaliculatus_F_contig13467.2816.1|Name=mRNA_H-canaliculatus_F_contig13467.2816.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13467:79..2353- (Hapterophycus canaliculatus Oshoro5f female)
CACCTGACGCTGGACATCCCGGCGACGCCTCTCTTCAAGGATTCCCAGGG
AGGGAACATCATCCCCCAGATCCCTCTGTTCAAGGTTCTGGACAAGTACA
ACGGGGAGAACTGGACGCACCTGACGCTGGACATCCCGGCGACGCCTCTC
TTCAAGGATTCCCAGGGAGGGAACATCATCCCCCAGATCCCTCTGTTCAA
GGTTCTGGACAAGTACAACGGGGAGAACTGGACGGACGTGGTCAAGGGTG
GGGTACTGACGCGCAAGCGCTACGTGCTGAGGCGGTTACCGAGGACGTGG
TCAAGGGTGGGGTACTGACGCGCAAGCGCTACGTGCTGAGGCGGTTACCG
AGGTACCTCATCTTCCACCTGGCCCGGTTCACGAAGAACAACTTTTACGT
GGAGAAGAACCCGACCATCGTCAACTTTCCCGTGAAGAACCTGGAGCTCA
AGGACTGTACCTCATCTTCCACCTGGCCCGGTTCACGAAGAACAACTTTT
ACGTGGAGAAGAACCCGACCATCGTCAACTTTCCCGTGAAGAACCTGGAG
CTCAAGGACTGGCTGCGAGCAGAAGACGCCGGGCTGCCCAAGGAGGAGGA
GTTGGCGGGCATGTCGATCGCCCAGCTCAAGGCGCACCTTAACAAATACT
CCATCTCCAGCAGGGACTGTGTCGAACGCAGGGCTGCGAGCAGAAGACGC
CGGGCTGCCCAAGGAGGAGGAGTTGGCGGGCATGTCGATCGCCCAGCTCA
AGGCGCACCTTAACAAATACTCCATCTCCAGCAGGGACTGTGTCGAACGC
AGTGACCTCGAGGAAAAGGTGCGCGACACGCTCATCAGGACCGTGCCGGA
GTTGCTCGCGACCAAGTACGACCTCCTGGCCAACATCTGCCACGACAGTC
CCCCCGGCCAGGGCAAGGAAGGGCAGACGGATCCGCTCTCGGCGGGGTGC
TACCGCGCACACGTCCAGAACAAGTCGACGGAGCAGTGGTGATGACCTCG
AGGAAAAGGTGCGCGACACGCTCATCAGGACCGTGCCGGAGTTGCTCGCG
ACCAAGTACGACCTCCTGGCCAACATCTGCCACGACAGTCCCCCCGGCCA
GGGCAAGGAAGGGCAGACGGATCCGCTCTCGGCGGGGTGCTACCGCGCAC
ACGTCCAGAACAAGTCGACGGAGCAGTGGTGA
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