mRNA_H-canaliculatus_F_contig1344.2798.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1344.2798.1
Unique NamemRNA_H-canaliculatus_F_contig1344.2798.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1344.2798.1 vs. uniprot
Match: D7G1H3_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H3_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.510e-45
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 3 
Query:   18 MSHSQMLSLYRHIIRNARVYPSKSRDRVLKEIRSEFRKNANESDPVKVDAQRQVAMKGLQQLMVYTKMDTSGLDISVTLEQNPLGGPTQQ 287
            MSH+QMLSLYRHIIRNARVYPSKSRDRVLKEIR EFRKNA ESDPVKVD QRQ+AMKGLQQLMVYTKMDTSGLD+SVTLEQNPLGGPTQQ
Sbjct:    1 MSHAQMLSLYRHIIRNARVYPSKSRDRVLKEIRLEFRKNATESDPVKVDEQRQLAMKGLQQLMVYTKMDTSGLDMSVTLEQNPLGGPTQQ 90
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BLAST of mRNA_H-canaliculatus_F_contig1344.2798.1 vs. uniprot
Match: K8YXG1_NANGC (Complex1_LYR_dom domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXG1_NANGC)

HSP 1 Score: 97.4 bits (241), Expect = 1.640e-20
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 3 
Query:   33 MLSLYRHIIRNARVYPSKSRDRVLKEIRSEFRKNANESDPVKVDAQRQVAMKGLQQLMVYTKMDTSGLDISVTLEQNPLGG 275
            +L LYR II+NA+V+PSK RDR+LKEIR EFR NA ESDP KV   R +A++GL QL  YT ++ S +D SVT+EQ PLGG
Sbjct:   15 VLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKESDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGG 95
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BLAST of mRNA_H-canaliculatus_F_contig1344.2798.1 vs. uniprot
Match: A0A836CDN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN3_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.570e-10
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 3 
Query:   18 MSHS--QMLSLYRHIIRNARVYPSKSRDRVLKEIRSEFRKNANESDPVKVDAQRQVAMKGLQQLMVYTKMDTSGLD 239
            M+H+  QML LYRH++RNA+V+PS  RD ++++IR EFR+ A E+DP K++ +  VA+KGL+QLM YT +    +D
Sbjct:    1 MAHNKTQMLRLYRHVLRNAKVFPSIKRDALVQDIRIEFREGALETDPKKLEQRISVAVKGLEQLMAYTGLRKEDMD 76
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BLAST of mRNA_H-canaliculatus_F_contig1344.2798.1 vs. uniprot
Match: A0A7S3AP29_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AP29_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 2.410e-8
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:   12 RRMSHS----QMLSLYRHIIRNARVYPSKSRDRVLKEIRSEFRKNANESDPVKVDAQRQVAMKGLQQLMVYTKMDTSGLDISVTL 254
            RR+ H+      LSLYRHI+R A+ +PS+ + +V+ EIRSEFR+N +E+DPVK+      A +GL+ L+  +++     D++  L
Sbjct:   12 RRLPHAGRPMSTLSLYRHILRAAQRWPSRKKSKVIDEIRSEFRRNQHEADPVKLRKMVSDAQQGLEALLSQSQLSERSQDVTYQL 96
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BLAST of mRNA_H-canaliculatus_F_contig1344.2798.1 vs. uniprot
Match: A0A835YDR1_9CHLO (Complex1_LYR_dom domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YDR1_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 4.980e-6
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:   36 LSLYRHIIRNARVYPSKSRDRVLKEIRSEFRKNANESDPVKVDAQRQVAMKGLQQLMVY 212
            L+LYRHI++ A+ +PSK RD +++EI+SEFR N + +DP ++     +A +GL  L  Y
Sbjct:   10 LTLYRHILKAAKFFPSKKRDSIIREIKSEFRANKDLADPTRLSQCLTLAQRGLADLRSY 68
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BLAST of mRNA_H-canaliculatus_F_contig1344.2798.1 vs. uniprot
Match: A0A7S3QQ30_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QQ30_DUNTE)

HSP 1 Score: 55.1 bits (131), Expect = 7.410e-6
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 3 
Query:   18 MSHSQMLSLYRHIIRNARVYPSKSRDRVLKEIRSEFRKNANESDPVKVDAQRQVAMKGLQQLMVY--TKMDTSGLDISVTLE 257
            MS   ML +YR I++ AR +PS  RDR++ EI+ +FR   + +DP ++   R++A +GL  L  Y     D  G DISV+L+
Sbjct:    1 MSGMPMLHVYRQILKAARFFPSIKRDRIIAEIKHDFRAKKDLTDPERLSHARELAERGLSDLQAYLPAARDAGG-DISVSLK 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1344.2798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G1H3_ECTSI2.510e-4593.33Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
K8YXG1_NANGC1.640e-2061.73Complex1_LYR_dom domain-containing protein n=3 Tax... [more]
A0A836CDN3_9STRA2.570e-1050.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3AP29_9EUKA2.410e-840.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A835YDR1_9CHLO4.980e-644.07Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A7S3QQ30_DUNTE7.410e-640.24Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1344contigH-canaliculatus_F_contig1344:13860..17273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue6.9e-38
Seed eggNOG ortholog2880.D7G1H3
KEGG koko:K22069
EggNOG free text desc.Complex 1 protein (LYR family)
EggNOG OGs2DISQ@1,2SD8U@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-07_001010.1
Exons3
Model size1483
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1344.2798.1prot_H-canaliculatus_F_contig1344.2798.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1344 15053..17256 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.239736-UTR-H-canaliculatus_F_contig1344:13859..150521622929084.239736-UTR-H-canaliculatus_F_contig1344:13859..15052Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1344 13860..15052 -
1696845673.30376-UTR-H-canaliculatus_F_contig1344:13859..150521696845673.30376-UTR-H-canaliculatus_F_contig1344:13859..15052Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1344 13860..15052 -
1622929084.2972782-UTR-H-canaliculatus_F_contig1344:17256..172731622929084.2972782-UTR-H-canaliculatus_F_contig1344:17256..17273Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1344 17257..17273 -
1696845673.354082-UTR-H-canaliculatus_F_contig1344:17256..172731696845673.354082-UTR-H-canaliculatus_F_contig1344:17256..17273Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1344 17257..17273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.2528796-CDS-H-canaliculatus_F_contig1344:15052..151011622929084.2528796-CDS-H-canaliculatus_F_contig1344:15052..15101Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1344 15053..15101 -
1696845673.3166826-CDS-H-canaliculatus_F_contig1344:15052..151011696845673.3166826-CDS-H-canaliculatus_F_contig1344:15052..15101Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1344 15053..15101 -
1622929084.2677872-CDS-H-canaliculatus_F_contig1344:16054..161731622929084.2677872-CDS-H-canaliculatus_F_contig1344:16054..16173Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1344 16055..16173 -
1696845673.3288274-CDS-H-canaliculatus_F_contig1344:16054..161731696845673.3288274-CDS-H-canaliculatus_F_contig1344:16054..16173Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1344 16055..16173 -
1622929084.283249-CDS-H-canaliculatus_F_contig1344:17151..172561622929084.283249-CDS-H-canaliculatus_F_contig1344:17151..17256Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1344 17152..17256 -
1696845673.338881-CDS-H-canaliculatus_F_contig1344:17151..172561696845673.338881-CDS-H-canaliculatus_F_contig1344:17151..17256Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1344 17152..17256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1344.2798.1

>prot_H-canaliculatus_F_contig1344.2798.1 ID=prot_H-canaliculatus_F_contig1344.2798.1|Name=mRNA_H-canaliculatus_F_contig1344.2798.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp
MSHSQMLSLYRHIIRNARVYPSKSRDRVLKEIRSEFRKNANESDPVKVDA
QRQVAMKGLQQLMVYTKMDTSGLDISVTLEQNPLGGPTQQ*
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mRNA from alignment at H-canaliculatus_F_contig1344:13860..17273-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1344.2798.1 ID=mRNA_H-canaliculatus_F_contig1344.2798.1|Name=mRNA_H-canaliculatus_F_contig1344.2798.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1344:13860..17273- (Hapterophycus canaliculatus Oshoro5f female)
GAAGTGGAGAACGCAGGATGTCGCACTCTCAGATGCTCTCGTTATACCGC
CACATCATCCGGAACGCCCGGGTTTACCCCAGCAAGAGTCGGGATCGTGT
GCTCAAGGAAATCCGCTCCGAGGTGAGCACTGCTCCAGCCTTCGCAATTG
CTGTGCCGAGTGCCGAGTCAACTAGCTGAGCGGCGTACTGCTGGATTATT
TCACCTTGCGCAGGCCCTCTCGAAAAAGCTTGAGCCATTTCTGGTGTAGC
GGATGAAGCATCCCACTGTATGCAGCAAGCAGGAAGACGTCATCGCTGCA
TCTGATAGAACTAGATTTGTGTAAAACCTCAGATGTCCAGATCACGGTGT
TGCAGTTTGCGCCGCACTGTGTCGAAGCAACCGTCGAAGCAACCTTCTTT
CGTAGACTTCGCGTGTAGTTCGGGCAGCATCGTCGACGCGATGCACACCG
ACACATTGCCCCTTTCCGTGCAAGTGTCTCGGGCTCAGATGCCTCGATAG
TTAATTGTATCTGCGATACGCTTCTGCGCTGGCACACCAGTGACTTGCGA
GCTGTGCGGAAAATTACCTCCATTGTTCGCAAGGGCCCGCATTAAATGCA
CACCCCTGCTGCTGCCTATGTTGCTCGGTCAGAACTGACTCTTTCGCAGA
ACCGACATCGGGTTATCTGAGAGTGGATTGTTCGACCTAAAAATGGATGT
GTCGGAGGATCTAATCCCTACGCGACTATGTTCCATTGTAAGCCTTCGAA
AAATTGAGAAATGCACCGCGAGTCGCTATAGCAGGGTCTATATGTCCTAA
AATGGAACCCGACACATCCATGGCTGCCGCACGGGATTGGTACTTGTATC
GCTTTGCCTATAAAACGTCGCCGAATTTTTTTCGGGTTTGACACACGGTT
GTCTCTGGTACATATTTTCCGAGAAGTCGCCCGTAAAGTACTTCCTTTAA
TAGATAAAAGTCGTGTGATTCAAGTAACAGGTACCAGGTATATTTTTTCT
GATGAAAGAGAGGATAGTCTCGCTTACTTGGCTCGGGCGCTTCCACCACC
ACCTTTAACGTGCTCTCTGTCGTTCGGTTCGTCACGCTCGTTTCGTTCAG
TTTAGAAAAAATGCGAATGAGAGCGACCCCGTAAAGGTGGACGCGCAGCG
GCAGGTGGCCATGAAGGGGCTTCAGCAGCTCATGGTTTATACGAAAATGG
ACACCAGTGGCCTGGACATGTGAGACATTGAAACGTAGGAACTGATGCGC
AGCGAGGGAAACATCGAGGGGTGGTGGTAGTGGGGTAGATGGAAAGAGAG
CAGAGACAGGCAGGCAGGGAGACAAATGGACACAAGGGAGAAACAAGGAA
CGAGAGAGATGGAATCGGTGTGGCACGAAGTACGGAAATCGAGGAGGGAG
GAGGACGAGAAGGATGACGGGAAGAGATTGGCGGGGCGCTTCTACGTCCA
ACTGAATGACTGATGAATTAGGCATTTTTCCTGCGAGGGGTAGTCCGGAT
GAGCAATGGGGCTTTCTTGTAACCGAGCGAAAGGAGTACATGATCTTCTC
AATCCCTTGTCTATACCTCGATCCGTTTCGCATTTGTGGTGGCGTGGGCT
AGAGATTGCCTCGTTTTCGTCACCATCTGGATTTCCGATCCCTTGATCGT
TTTGATTAGCGATTGCTGTTGGACAAGCAAATGGAGAGCGATGACAAATT
AATTCCCCCCACGAGTTGAGTGTTCATTTCCTGCGATAGTTGATGTTTGG
CATCCAGTTTTGGAGATTTAGAAAACACTCAGAGTAGAGACCTGCGGCTG
ACGCTGCAAGATGCATTCTCGCCCTTCTCGAGTTGTAACTGATCGAAGAA
AGAAGCAACCAACTGCAAAGCCAATTCCGTTGGATTTTATGTACATCACC
TGTGCGTGAATGCTCGTTTGGGGCCCGCGAGGGGTTGGACAGTCCGGAAA
TGGATTGTGCTTAGGTTACAACACGCGCGATATCGATGCCGACACAATCG
GCGGCGTTGCGGAGACGTTGTGGACCACCACTTTGAAAGCGCGTGCCGTG
AGACAGATAGTGGTATGTTAAATGTTCCCCATCCCGCAACCGTGAGCAAC
GTGCATGAACGTTATCCTCACCCTTACCTGATCCAACCGCTGCCGTTGTG
TCTCTGCTCTCTTCGTTTTCAGAAGCGTAACGTTGGAGCAAAATCCACTT
GGAGGGCCGACGCAACAGTAGCAGGACGACACGGAGACCCCGTCACGGAG
GTCTGGAACCTCTGCTGCCGTTTGCACGGAAGAAGCCAGATGGAGCCAAC
TGCGACAGTGTAGACACCACGCCGGGAGCCTTGATGTAGGGCACTGAGCC
TTCGCTGCGGTCGCTCGGAGCCTCCAAAGGGCTACAATGCCACCAAACCA
AGCTGAATTCGTTAGTCTTCCCCCGCGCCTCGTACGTCCAGGAAAGACTT
ACGGTAGATCGATGGAGACAAGGAGCGAATGCATGCTCGTAGGCATTTCC
TTGGCGTGTCTTTAGTTGTCTGCGATACCAGAACCGAGACGGACGAAATG
CCACGATAGAACCATTGATCGATTAATGTCCCCGAGGATCGCAGGTTTCG
CACGCTGGACGCTGTTTTCGAAGTCGGGGCAGTGCGCGCGGGAGGGTGTT
TTGTATTTCGTATTTTCGATATCCTGTAGTTTGCGCCCTTGCCTGGAAAG
ATTTAGGGGCATTTCCCTTGTTGATATACTCTAGGCCCTTGTGAGGCTTG
AGTGACGCGCTTATTCCACGCGAGCGACATCGCAATGTGAGCGTACCACA
AACGCACCTCATATGTTGCCACCTGGTAGGCATGTTCGAGTACCAGACAA
GACGAACAACCCTGTTTCCAGGGGAGTGCGATGCGGAAGTTGATGCAGAA
AAAATGAGTTTCACGGCTTTGTACTATGTGTTGTTTCTATCCCATCCATC
GAACTGGACACTGTATGGGTTTCAACACAAGCTTCCTGAGACACCTGCCG
AGAGGCTTCTCGGAGGATATCTCTTCGGTGTTTTTGACTCTTACTTTTGA
AAACATAAGTCTGCCGAGTCCCACGGCGTTCTAGTTATCTTGATGTTTTA
GTCCCGTCCAACGCGAAGAACCCCCCCTGTTTGGAATCCAGCACCCGCCT
GCCAGGGACGCTGACTGAGACGTCGCACAGGAGGTATTCCCTCGGTGTTG
TTTGCTCTTTCTGTCAAAAACAGGAGTCTGAGGGTGAAATCTGGCGGGAA
AATGAGCTAGGGCTGGCCTAGTCAAATGTGCCGCGAATCGACAATTTGCT
CATACTGCTGGATTCTACCCTCAAAGCATGTCGCTACACAGTTCCAATTT
TCAAATTGTTTGTTGTGTCCGGCTAAAAATTTCCGACTACGTTTTTGTGT
GACAGAAATCCAAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1344:13860..17273-

>mRNA_H-canaliculatus_F_contig1344.2798.1 ID=mRNA_H-canaliculatus_F_contig1344.2798.1|Name=mRNA_H-canaliculatus_F_contig1344.2798.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1344:13860..17273- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGCACTCTCAGATGCTCTCGTTATACCGCCACATCATCCGGAACGC
CCGGGTTTACCCCAGCAAGAGTCGGGATCGTGTGCTCAAGGAAATCCGCT
CCGAGATGTCGCACTCTCAGATGCTCTCGTTATACCGCCACATCATCCGG
AACGCCCGGGTTTACCCCAGCAAGAGTCGGGATCGTGTGCTCAAGGAAAT
CCGCTCCGAGTTTAGAAAAAATGCGAATGAGAGCGACCCCGTAAAGGTGG
ACGCGCAGCGGCAGGTGGCCATGAAGGGGCTTCAGCAGCTCATGGTTTAT
ACGAAAATGGACACCAGTGGCCTGGACATTTTAGAAAAAATGCGAATGAG
AGCGACCCCGTAAAGGTGGACGCGCAGCGGCAGGTGGCCATGAAGGGGCT
TCAGCAGCTCATGGTTTATACGAAAATGGACACCAGTGGCCTGGACATAA
GCGTAACGTTGGAGCAAAATCCACTTGGAGGGCCGACGCAACAGTAGAAG
CGTAACGTTGGAGCAAAATCCACTTGGAGGGCCGACGCAACAGTAG
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