mRNA_H-canaliculatus_F_contig13412.2782.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13412.2782.1
Unique NamemRNA_H-canaliculatus_F_contig13412.2782.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13412.2782.1 vs. uniprot
Match: A0A6H5KQA2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.810e-22
Identity = 71/110 (64.55%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:    1 WLSPPPRRGSSPPVDDQRARVQEGTGPAGTRTGERREGDDSAPPESAPGNTDDDDYIYPDXXXXXXXXXXXXXMNVAVGQAAGSIQDRAAVEDARQQELARVLAESRRDA 330
            ++ PPPRR    P     AR Q+GTGPAGTRT      DDSA PESAPGNT DD+YIYPD      XXXX   M+VAVGQ AG IQ RAA E ARQ+ELARVLAESRRDA
Sbjct:   28 FMPPPPRR----PRTHDGARDQDGTGPAGTRTD-----DDSASPESAPGNTRDDEYIYPDTGGVDDXXXXD--MHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDA 126
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BLAST of mRNA_H-canaliculatus_F_contig13412.2782.1 vs. uniprot
Match: D8LFQ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ3_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 6.860e-22
Identity = 72/110 (65.45%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:    1 WLSPPPRRGSSPPVDDQRARVQEGTGPAGTRTGERREGDDSAPPESAPGNTDDDDYIYPDXXXXXXXXXXXXXMNVAVGQAAGSIQDRAAVEDARQQELARVLAESRRDA 330
            ++ PPPRR    P     A  Q+GTGPAGTRT      DDSA PESAPGNT DDDYIYPD     XXXXX   M+VAVGQ AG IQ RAA E ARQ+ELARVLAESRRDA
Sbjct:   28 FMPPPPRR----PRTHDGAHDQDGTGPAGTRTD-----DDSASPESAPGNTRDDDYIYPDTGGVDXXXXXD--MHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDA 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13412.2782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQA2_9PHAE3.810e-2264.55USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFQ3_ECTSI6.860e-2265.45Ubiquitin carboxyl-terminal hydrolase family prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13412contigH-canaliculatus_F_contig13412:89..1181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size423
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13412.2782.1prot_H-canaliculatus_F_contig13412.2782.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13412 89..1181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929082.469364-CDS-H-canaliculatus_F_contig13412:88..2001622929082.469364-CDS-H-canaliculatus_F_contig13412:88..200Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13412 89..200 +
1696845672.4805462-CDS-H-canaliculatus_F_contig13412:88..2001696845672.4805462-CDS-H-canaliculatus_F_contig13412:88..200Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13412 89..200 +
1622929082.4822962-CDS-H-canaliculatus_F_contig13412:577..7411622929082.4822962-CDS-H-canaliculatus_F_contig13412:577..741Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13412 578..741 +
1696845672.4890258-CDS-H-canaliculatus_F_contig13412:577..7411696845672.4890258-CDS-H-canaliculatus_F_contig13412:577..741Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13412 578..741 +
1622929082.4930782-CDS-H-canaliculatus_F_contig13412:1034..11811622929082.4930782-CDS-H-canaliculatus_F_contig13412:1034..1181Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13412 1035..1181 +
1696845672.4980955-CDS-H-canaliculatus_F_contig13412:1034..11811696845672.4980955-CDS-H-canaliculatus_F_contig13412:1034..1181Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13412 1035..1181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13412.2782.1

>prot_H-canaliculatus_F_contig13412.2782.1 ID=prot_H-canaliculatus_F_contig13412.2782.1|Name=mRNA_H-canaliculatus_F_contig13412.2782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=141bp
WLSPPPRRGSSPPVDDQRARVQEGTGPAGTRTGERREGDDSAPPESAPGN
TDDDDYIYPDTDGGGDGDDDDDDMNVAVGQAAGSIQDRAAVEDARQQELA
RVLAESRRDARSDENASSGGAAEASSSQGSSSSRGASGEDV
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mRNA from alignment at H-canaliculatus_F_contig13412:89..1181+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13412.2782.1 ID=mRNA_H-canaliculatus_F_contig13412.2782.1|Name=mRNA_H-canaliculatus_F_contig13412.2782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1093bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13412:89..1181+ (Hapterophycus canaliculatus Oshoro5f female)
TGGCTCTCCCCCCCCCCCCGTCGTGGCTCTTCGCCCCCCGTTGACGACCA
GAGAGCCCGCGTTCAGGAGGGCACCGGGCCGGCGGGAACTCGCACCGGCG
AGAGAAGGGAGGGTCTGGTTTGTTTTGAGTTTTGGCGGTCCTCGAGGGTA
TGACACGCAGAGTGTCAGAGTGTTTCCAGCACGTGTGGCCAAAGGCTAAT
GCTGGCACGTGTCACCTTCCCGTTTAGGTTGCAGGCACAGGGATCGATAT
TTTCAACAGAAACCCCGCTTATGAGTGCTGGCCGCCCTTGAGCTCTGGTA
AGCTAAAAGCTAGCTGAACTATTATGTGCAATCACAACAGAAGGGAGACG
AAGGGAGGTAGAGAGATACTCCGTTGCCAGAACTCGTAACCATGTACTTC
ATGTCTCGCGCTGTGTGTGGTGCGTGTGTTCCTGGTTCCCTCACCCCCTC
CCTTACCCCTCCCTTACCCAACCCCCCCGCCGTCTCCAGGCGACGACTCG
GCCCCACCCGAGTCCGCCCCCGGGAACACGGATGACGACGACTACATCTA
CCCTGACACGGACGGCGGGGGCGACGGCGACGACGACGACGACGACATGA
ACGTGGCCGTTGGGCAGGCAGCCGGTTCGATCCAGGACCGAGCCGCCGTG
GAGGTACTCGTATTTAGTTCGACCAGGGAACACGCCGCCATGTATACTAC
CTGTCGCGAAGCCCGAGTGTCTCTTTCTTGAATTTTGCGCTTGCGCGTGC
GCCGTTGTGGAAAGGATGGTTAATACGGTCAGGATTAGTGCTAGTACTCT
AAGCCGAGTCTCCATCTCCGTCAGGGACTATCTCGTTGCGCAAGAAACTA
CAACTGTCTACCGTTCGTTGAAAAGCGGCGTTTTCCATCTCTTGTTGCTC
GTGCACCAAACTAGCTTCCCCGGTATTGGTATGATGCGCCGCGCAGGATG
CGCGTCAGCAAGAGCTCGCTCGGGTCTTGGCGGAGAGCAGGAGGGATGCG
CGGAGCGACGAGAATGCATCCTCCGGGGGCGCAGCGGAAGCCTCGTCTAG
CCAGGGCTCCTCATCCAGCCGCGGGGCGAGTGGTGAAGATGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13412:89..1181+

>mRNA_H-canaliculatus_F_contig13412.2782.1 ID=mRNA_H-canaliculatus_F_contig13412.2782.1|Name=mRNA_H-canaliculatus_F_contig13412.2782.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=846bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13412:89..1181+ (Hapterophycus canaliculatus Oshoro5f female)
TGGCTCTCCCCCCCCCCCCGTCGTGGCTCTTCGCCCCCCGTTGACGACCA
GAGAGCCCGCGTTCAGGAGGGCACCGGGCCGGCGGGAACTCGCACCGGCG
AGAGAAGGGAGGTGGCTCTCCCCCCCCCCCCGTCGTGGCTCTTCGCCCCC
CGTTGACGACCAGAGAGCCCGCGTTCAGGAGGGCACCGGGCCGGCGGGAA
CTCGCACCGGCGAGAGAAGGGAGGGCGACGACTCGGCCCCACCCGAGTCC
GCCCCCGGGAACACGGATGACGACGACTACATCTACCCTGACACGGACGG
CGGGGGCGACGGCGACGACGACGACGACGACATGAACGTGGCCGTTGGGC
AGGCAGCCGGTTCGATCCAGGACCGAGCCGCCGTGGAGGCGACGACTCGG
CCCCACCCGAGTCCGCCCCCGGGAACACGGATGACGACGACTACATCTAC
CCTGACACGGACGGCGGGGGCGACGGCGACGACGACGACGACGACATGAA
CGTGGCCGTTGGGCAGGCAGCCGGTTCGATCCAGGACCGAGCCGCCGTGG
AGGATGCGCGTCAGCAAGAGCTCGCTCGGGTCTTGGCGGAGAGCAGGAGG
GATGCGCGGAGCGACGAGAATGCATCCTCCGGGGGCGCAGCGGAAGCCTC
GTCTAGCCAGGGCTCCTCATCCAGCCGCGGGGCGAGTGGTGAAGATGTGG
ATGCGCGTCAGCAAGAGCTCGCTCGGGTCTTGGCGGAGAGCAGGAGGGAT
GCGCGGAGCGACGAGAATGCATCCTCCGGGGGCGCAGCGGAAGCCTCGTC
TAGCCAGGGCTCCTCATCCAGCCGCGGGGCGAGTGGTGAAGATGTG
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