mRNA_H-canaliculatus_F_contig134.2768.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig134.2768.1
Unique NamemRNA_H-canaliculatus_F_contig134.2768.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig134.2768.1 vs. uniprot
Match: D8LGN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.490e-28
Identity = 70/127 (55.12%), Postives = 81/127 (63.78%), Query Frame = 1 
Query:    1 GVAGRTGET-TGETVMLAVQLNPEELAARKERVCNEALRQHAVLQALRAKHAGKRGRYNSADQRMKDDAERALADLRVNILPHERHAISKP---GGATXXXXXXXXXXXXXXXXXXXXXNGKAARAG 369
            G  G  G    G+ V++ V L P+ELAARKE +  E  +Q  VLQ LRAKHAGKRGRYNSADQR+KDDAERA+ADLRVNI+PHER A+SKP   GGA                      NGKA+RAG
Sbjct:  193 GAGGEPGAAGVGDPVVIPVSLTPQELAARKEMISAETRKQLGVLQDLRAKHAGKRGRYNSADQRVKDDAERAMADLRVNIMPHERQAMSKPVADGGAKSGKKRKKSS------------NGKASRAG 307
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BLAST of mRNA_H-canaliculatus_F_contig134.2768.1 vs. uniprot
Match: A0A6H5L1P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P7_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.460e-27
Identity = 70/127 (55.12%), Postives = 80/127 (62.99%), Query Frame = 1 
Query:    1 GVAGRTGET-TGETVMLAVQLNPEELAARKERVCNEALRQHAVLQALRAKHAGKRGRYNSADQRMKDDAERALADLRVNILPHERHAISKP---GGATXXXXXXXXXXXXXXXXXXXXXNGKAARAG 369
            G  G  G    G+ V + V L P+ELAARKE +  E  +Q  VLQ LRAKHAGKRGRYNSADQR+KDDAERA+ADLRVNI+PHER A+SKP   GGA                      NGKA+RAG
Sbjct:  194 GAGGEPGAAGAGDPVAIPVSLTPQELAARKEMISAETRKQLGVLQDLRAKHAGKRGRYNSADQRVKDDAERAMADLRVNIMPHERQAMSKPVADGGAKSGKKRKKSS------------NGKASRAG 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig134.2768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGN0_ECTSI7.490e-2855.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1P7_9PHAE1.460e-2755.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig134contigH-canaliculatus_F_contig134:30839..31674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size373
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.828854-CDS-H-canaliculatus_F_contig134:30838..310111622929078.828854-CDS-H-canaliculatus_F_contig134:30838..31011Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 30839..31011 +
1696845671.6617558-CDS-H-canaliculatus_F_contig134:30838..310111696845671.6617558-CDS-H-canaliculatus_F_contig134:30838..31011Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 30839..31011 +
1622929078.844479-CDS-H-canaliculatus_F_contig134:31474..316731622929078.844479-CDS-H-canaliculatus_F_contig134:31474..31673Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 31475..31673 +
1696845671.6775482-CDS-H-canaliculatus_F_contig134:31474..316731696845671.6775482-CDS-H-canaliculatus_F_contig134:31474..31673Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 31475..31673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig134.2768.1prot_H-canaliculatus_F_contig134.2768.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig134 30839..31673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig134.2768.1

>prot_H-canaliculatus_F_contig134.2768.1 ID=prot_H-canaliculatus_F_contig134.2768.1|Name=mRNA_H-canaliculatus_F_contig134.2768.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
GVAGRTGETTGETVMLAVQLNPEELAARKERVCNEALRQHAVLQALRAKH
AGKRGRYNSADQRMKDDAERALADLRVNILPHERHAISKPGGATAAAASG
ESGGTKSSKKRKKSSNGKAARAGG
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mRNA from alignment at H-canaliculatus_F_contig134:30839..31674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig134.2768.1 ID=mRNA_H-canaliculatus_F_contig134.2768.1|Name=mRNA_H-canaliculatus_F_contig134.2768.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=836bp|location=Sequence derived from alignment at H-canaliculatus_F_contig134:30839..31674+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGTAGCGGGAAGGACGGGGGAGACGACCGGGGAGACGGTAATGTTGGC
CGTGCAGCTGAACCCGGAGGAACTCGCCGCGAGGAAGGAGAGGGTTTGCA
ACGAAGCGCTGAGGCAACACGCGGTGCTCCAGGCGCTGAGAGCGAAGCAC
GCGGGGAAGAGAGGCCGATACAAGTGAGTGATCTCGCGTGTTTCTCGGGT
GCTCCGCTGTCGGGGTTGCTGTCGGCGTTGGTTCCGGCTGTGTGTCGGCC
CGTTTGGGTGCTTTGTGCCCAAGGGGCGTGAGAGCAGCGAATGTTTTTAC
TGTGGTTTCTTCTGCATACGTGTTTCAGCAACGTGGTCGGGTCGGCTGCG
AAGGAGGAGGAGGAGGAGGAGTGGAGAACGTGATAGATGTCAGCACCACG
CGTACGTGGCGAGCTTCTTCCGCACGACACGTGTATTTTTACTCTCTGAT
TTAGTCGCTCGTTCTGTCTTTTTTGTCATTTCCCCCTGCTTGACTCGCGC
TGCGAACCCGCGTTCGATGGAACCGCTGTACGCAACGTTTCTTTCGTGGG
AATCGACATCGCCACCACCACCATCACCGCAATAATCATCACGGCTGCCT
CCGCCGCCGTATAACTATATGGACATTTCTCACCAGCTCGGCTGACCAGA
GGATGAAAGATGACGCCGAGAGAGCTTTGGCGGATCTAAGGGTGAACATA
CTGCCACACGAACGCCACGCTATTTCGAAACCCGGCGGTGCAACAGCCGC
CGCTGCTTCCGGTGAGAGCGGCGGCACGAAGAGTTCCAAGAAAAGGAAGA
AGTCCTCCAATGGAAAGGCGGCGAGGGCGGGAGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig134:30839..31674+

>mRNA_H-canaliculatus_F_contig134.2768.1 ID=mRNA_H-canaliculatus_F_contig134.2768.1|Name=mRNA_H-canaliculatus_F_contig134.2768.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig134:30839..31674+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGTAGCGGGAAGGACGGGGGAGACGACCGGGGAGACGGTAATGTTGGC
CGTGCAGCTGAACCCGGAGGAACTCGCCGCGAGGAAGGAGAGGGTTTGCA
ACGAAGCGCTGAGGCAACACGCGGTGCTCCAGGCGCTGAGAGCGAAGCAC
GCGGGGAAGAGAGGCCGATACAAGGCGTAGCGGGAAGGACGGGGGAGACG
ACCGGGGAGACGGTAATGTTGGCCGTGCAGCTGAACCCGGAGGAACTCGC
CGCGAGGAAGGAGAGGGTTTGCAACGAAGCGCTGAGGCAACACGCGGTGC
TCCAGGCGCTGAGAGCGAAGCACGCGGGGAAGAGAGGCCGATACAACTCG
GCTGACCAGAGGATGAAAGATGACGCCGAGAGAGCTTTGGCGGATCTAAG
GGTGAACATACTGCCACACGAACGCCACGCTATTTCGAAACCCGGCGGTG
CAACAGCCGCCGCTGCTTCCGGTGAGAGCGGCGGCACGAAGAGTTCCAAG
AAAAGGAAGAAGTCCTCCAATGGAAAGGCGGCGAGGGCGGGAGGGCTCGG
CTGACCAGAGGATGAAAGATGACGCCGAGAGAGCTTTGGCGGATCTAAGG
GTGAACATACTGCCACACGAACGCCACGCTATTTCGAAACCCGGCGGTGC
AACAGCCGCCGCTGCTTCCGGTGAGAGCGGCGGCACGAAGAGTTCCAAGA
AAAGGAAGAAGTCCTCCAATGGAAAGGCGGCGAGGGCGGGAGGG
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