mRNA_H-canaliculatus_F_contig134.2770.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig134.2770.1
Unique NamemRNA_H-canaliculatus_F_contig134.2770.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig134.2770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig134contigH-canaliculatus_F_contig134:36502..37885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size535
Cds size534
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig134.2770.1prot_H-canaliculatus_F_contig134.2770.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig134 36502..37885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.871088-CDS-H-canaliculatus_F_contig134:36501..365911622929077.871088-CDS-H-canaliculatus_F_contig134:36501..36591Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 36502..36591 -
1696845671.3067-CDS-H-canaliculatus_F_contig134:36501..365911696845671.3067-CDS-H-canaliculatus_F_contig134:36501..36591Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 36502..36591 -
1622929077.887576-CDS-H-canaliculatus_F_contig134:37428..377911622929077.887576-CDS-H-canaliculatus_F_contig134:37428..37791Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 37429..37791 -
1696845671.320771-CDS-H-canaliculatus_F_contig134:37428..377911696845671.320771-CDS-H-canaliculatus_F_contig134:37428..37791Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 37429..37791 -
1622929077.9269838-CDS-H-canaliculatus_F_contig134:37804..378851622929077.9269838-CDS-H-canaliculatus_F_contig134:37804..37885Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 37805..37885 -
1696845671.330929-CDS-H-canaliculatus_F_contig134:37804..378851696845671.330929-CDS-H-canaliculatus_F_contig134:37804..37885Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 37805..37885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig134.2770.1

>prot_H-canaliculatus_F_contig134.2770.1 ID=prot_H-canaliculatus_F_contig134.2770.1|Name=mRNA_H-canaliculatus_F_contig134.2770.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=178bp
PTPPHYSSTAYPNPVTPHPATAATPAARRRRRRRLSRVRRHARRVVHTTA
AATATASTVAGIAATATIRLAIAPRSPRSCGCCLPLRLALLPLPDLAHVD
QGAACRCLRRGRSWHCWQRRLWVPVAQPFEHAEVPLLAEHVPGRHLVCYL
RSMLARGWRIRAAPAVEASPAGNENPHS
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mRNA from alignment at H-canaliculatus_F_contig134:36502..37885-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig134.2770.1 ID=mRNA_H-canaliculatus_F_contig134.2770.1|Name=mRNA_H-canaliculatus_F_contig134.2770.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1384bp|location=Sequence derived from alignment at H-canaliculatus_F_contig134:36502..37885- (Hapterophycus canaliculatus Oshoro5f female)
CCGACGCCGCCCCACTACTCCAGCACCGCTTATCCTAACCCTGTCACCCC
CCATCCGGCTACGGCTGCGACCCCGGCGGCAGCGGCGGCGGCAGCGGCGA
AGACGACGGCGGCGACTGTCCCGAGTTCGCCGCCACGCCCGAAGGGTCGT
TCACACCACCGCTGCCGCTACCGCTACCGCTAGCACCGTTGCCGGCATCG
CCGCCACGGCAACCATTCGCCTCGCGATTGCTCCCCGGAGCCCCCGAAGT
TGCGGGTGCTGCCTGCCCCTGCGCCTGGCCTTGCTGCCACTTCCCGACCT
CGCCCACGTCGATCAAGGTGCCGCTTGCCGGTGCCTCCGGCGTGGGCGGT
CCTGGCATTGCTGGCAACGCCGCCTGTGGGTTCCCGTTGCGCAGCCGTTC
GAGCACGCCGAAGTCCCCCTGCTTGCGGAGCACGTCCCAGGTCGCCACCT
CGTTTGCGCCTGCGAGGAACGGGGCGGAGAAGGGACAAGACGGGGCAGGG
CGTCTTTCAGCATGGGGCAACGGCGCCGCCCTGTGGTCGCGAGGCGTACC
GGGGCTTCGAGTGCGCATCGGCGCACAAGCAGACGCAAGAGCAACGACGA
AAAACACCGGCAAAAGAGAGGCCAGGCTCAACCGCGCCGAGTAGACGGCT
CAACGCTTTCTAGCGCCACCCACTGGTACAGCTGTGCGGTGCGCAAGAGT
AACAGCCGCGCGCGCTTCATGGGCTCGCAGGCGCCCGGGCACAACATCAA
ACTTGGAGCGCGATTCCACGACGACCACCACGTCCAAATTCTGCGAGCGA
TGCACCGCTTCGACCTGTTTTGCTTTTCGGAAGCGTTTGATACCGGGCCG
CAACACGCGGGGTGTAGAACAACAAAAATGCGATACTTTCCCAGTGGCGC
AGGCATGGAAAGCTGTCTGCGTGTGGCCGTAGGGACGCACACGCGGAGCC
GCAAGTCTGAACATGACGCTCTGGGGTAGCGGCGGCAGCATTGCCTCAAA
TCACTACGCCGGCCGGAAGGCGCAAGCCGATCACGAGCCCAGGAGACCAG
GCGTGACCAGCAATCACAATTTTCGCTTCGAACTCTTGCGACCGCTTCGC
TCGTCCATGCCAAAGCTGCCCGTCTTCTGGAGGTCCTGAAACACAACGTC
GCATCGTCGTTTTTCGCTGGTACAACATCCTTCACCACGTACGCGCGCGT
CTCGTGGAACGGCTCGCAGCCTCAGAAGGTGCGCGTTGTAGCCCGCCCAC
TTACTAATTCACCCCCAATAGGCCTGATAGGGCGACGGACGGAGTACCTG
CGTTCGATGCTGGCTCGAGGTTGGCGAATTCGGGCGGCACCGGCGGTAGA
GGCATCTCCAGCTGGAAATGAGAATCCGCACTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig134:36502..37885-

>mRNA_H-canaliculatus_F_contig134.2770.1 ID=mRNA_H-canaliculatus_F_contig134.2770.1|Name=mRNA_H-canaliculatus_F_contig134.2770.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1068bp|location=Sequence derived from alignment at H-canaliculatus_F_contig134:36502..37885- (Hapterophycus canaliculatus Oshoro5f female)
CCGACGCCGCCCCACTACTCCAGCACCGCTTATCCTAACCCTGTCACCCC
CCATCCGGCTACGGCTGCGACCCCGGCGGCACCGACGCCGCCCCACTACT
CCAGCACCGCTTATCCTAACCCTGTCACCCCCCATCCGGCTACGGCTGCG
ACCCCGGCGGCACGGCGAAGACGACGGCGGCGACTGTCCCGAGTTCGCCG
CCACGCCCGAAGGGTCGTTCACACCACCGCTGCCGCTACCGCTACCGCTA
GCACCGTTGCCGGCATCGCCGCCACGGCAACCATTCGCCTCGCGATTGCT
CCCCGGAGCCCCCGAAGTTGCGGGTGCTGCCTGCCCCTGCGCCTGGCCTT
GCTGCCACTTCCCGACCTCGCCCACGTCGATCAAGGTGCCGCTTGCCGGT
GCCTCCGGCGTGGGCGGTCCTGGCATTGCTGGCAACGCCGCCTGTGGGTT
CCCGTTGCGCAGCCGTTCGAGCACGCCGAAGTCCCCCTGCTTGCGGAGCA
CGTCCCAGGTCGCCACCTCGTTTGCCGGCGAAGACGACGGCGGCGACTGT
CCCGAGTTCGCCGCCACGCCCGAAGGGTCGTTCACACCACCGCTGCCGCT
ACCGCTACCGCTAGCACCGTTGCCGGCATCGCCGCCACGGCAACCATTCG
CCTCGCGATTGCTCCCCGGAGCCCCCGAAGTTGCGGGTGCTGCCTGCCCC
TGCGCCTGGCCTTGCTGCCACTTCCCGACCTCGCCCACGTCGATCAAGGT
GCCGCTTGCCGGTGCCTCCGGCGTGGGCGGTCCTGGCATTGCTGGCAACG
CCGCCTGTGGGTTCCCGTTGCGCAGCCGTTCGAGCACGCCGAAGTCCCCC
TGCTTGCGGAGCACGTCCCAGGTCGCCACCTCGTTTGCTACCTGCGTTCG
ATGCTGGCTCGAGGTTGGCGAATTCGGGCGGCACCGGCGGTAGAGGCATC
TCCAGCTGGAAATGAGAATCCGCACTCTTACCTGCGTTCGATGCTGGCTC
GAGGTTGGCGAATTCGGGCGGCACCGGCGGTAGAGGCATCTCCAGCTGGA
AATGAGAATCCGCACTCT
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