mRNA_H-canaliculatus_F_contig13388.2752.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13388.2752.1
Unique NamemRNA_H-canaliculatus_F_contig13388.2752.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13388.2752.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.760e-20
Identity = 96/157 (61.15%), Postives = 106/157 (67.52%), Query Frame = 1 
Query:    1 DRSSLIVEAISGLLGCERGKVTRTGMLSHGLEIFSQEXXXXXXXXXXAAAGPAAAPAAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGKRVVGDAVVVLAGGGVEHGAAGSGDVDGDGTANASRACNPLRLREELMRLR 471
            DR+SL+VEA+S LL C R  V    MLSHGL+++  +          A AG  AA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXX          L G+R+VGDAVVVL GGG+ HGAAGSGDVDGDG AN  R CNPLRLREELMR R
Sbjct:  585 DRASLVVEAVSALLECGRESVASACMLSHGLDLYYNKDVE-------AEAGDGAA---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGTNERASGLAGRRIVGDAVVVLVGGGMGHGAAGSGDVDGDGEANGDRTCNPLRLREELMRER 725
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BLAST of mRNA_H-canaliculatus_F_contig13388.2752.1 vs. uniprot
Match: A0A6H5L4V6_9PHAE (Clu domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.610e-20
Identity = 84/157 (53.50%), Postives = 95/157 (60.51%), Query Frame = 1 
Query:    1 DRSSLIVEAISGLLGCERGKVTRTGMLSHGLEIFSQEXXXXXXXXXXAAAGPAAAPAAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGKRVVGDAVVVLAGGGVEHGAAGSGDVDGDGTANASRACNPLRLREELMRLR 471
            DR+SL+VEA+S LL C R  V    MLSHGL+++  +          A A                      XXXXXXXXXXXXXXXXXXXXX          L G+R++GDAVVVL GGG+ HGAAGSGDVDGDG AN  R CNPLRLREELMR R
Sbjct:  932 DRASLVVEAVSALLECSRESVASACMLSHGLDLYYNKDVEAGAEDGLAVAS-----------------SLDGXXXXXXXXXXXXXXXXXXXXXAPVTNERASGLAGRRIMGDAVVVLVGGGMGHGAAGSGDVDGDGAANGDRTCNPLRLREELMRER 1071
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13388.2752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS90_ECTSI2.760e-2061.15eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4V6_9PHAE3.610e-2053.50Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13388contigH-canaliculatus_F_contig13388:746..1786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue4.7e-18
Seed eggNOG ortholog2880.D8LS90
EggNOG free text desc.Regulator of chromosome condensation (RCC1) repeat
EggNOG OGs2S0QB@2759,COG5184@1
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.6478271-CDS-H-canaliculatus_F_contig13388:745..11511622929076.6478271-CDS-H-canaliculatus_F_contig13388:745..1151Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13388 746..1151 +
1696845670.8331134-CDS-H-canaliculatus_F_contig13388:745..11511696845670.8331134-CDS-H-canaliculatus_F_contig13388:745..1151Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13388 746..1151 +
1622929076.6628757-CDS-H-canaliculatus_F_contig13388:1721..17861622929076.6628757-CDS-H-canaliculatus_F_contig13388:1721..1786Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13388 1722..1786 +
1696845670.8455849-CDS-H-canaliculatus_F_contig13388:1721..17861696845670.8455849-CDS-H-canaliculatus_F_contig13388:1721..1786Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13388 1722..1786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13388.2752.1prot_H-canaliculatus_F_contig13388.2752.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13388 746..1786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13388.2752.1

>prot_H-canaliculatus_F_contig13388.2752.1 ID=prot_H-canaliculatus_F_contig13388.2752.1|Name=mRNA_H-canaliculatus_F_contig13388.2752.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=157bp
DRSSLIVEAISGLLGCERGKVTRTGMLSHGLEIFSQEEEEEEEPPSGAAA
GPAAAPAAALASAPAAALASAAGSDVDGGVGQGGSRHVQKGGAAAVTNER
ASRLTGKRVVGDAVVVLAGGGVEHGAAGSGDVDGDGTANASRACNPLRLR
EELMRLR
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mRNA from alignment at H-canaliculatus_F_contig13388:746..1786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13388.2752.1 ID=mRNA_H-canaliculatus_F_contig13388.2752.1|Name=mRNA_H-canaliculatus_F_contig13388.2752.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1041bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13388:746..1786+ (Hapterophycus canaliculatus Oshoro5f female)
GACCGGTCGAGCTTGATCGTCGAGGCGATCTCGGGGCTTCTTGGGTGTGA
GCGAGGGAAGGTGACCAGGACCGGGATGCTGTCGCACGGGCTGGAGATTT
TCTCCCAGGAGGAGGAGGAGGAGGAGGAGCCGCCGTCGGGGGCAGCGGCG
GGGCCAGCGGCGGCACCAGCAGCAGCATTAGCATCGGCACCGGCAGCAGC
ATTAGCGTCAGCGGCAGGTTCCGACGTCGACGGCGGCGTTGGGCAGGGGG
GGTCGCGGCACGTTCAGAAGGGCGGCGCTGCTGCCGTCACGAACGAGCGT
GCGAGTAGGCTGACCGGGAAGAGGGTTGTGGGCGACGCGGTGGTGGTGCT
GGCGGGCGGCGGCGTGGAGCACGGGGCGGCCGGTTCCGGGGACGTGGATG
GGGACGGTGCGCGAGACGGAGCGTGCTTTTTTCTACCACCTTTGCTTGCT
GTTGCTGTTGGTGTTGCTGATGCGGTTGCTGATGCGGTTGCTGATGCGGT
TGCTGATGCGGTTGCTGTTGCTGTTGCTATTTTGCCGTTGCTGTTGCTGT
TGTTGCTGTCGCTGTTGCTGTTGCTAGTTACTAGTTGCTGTGTTGGCGCT
GGGATTCTAGTCGTGCTTGTCTGCTGCTTCTGCTGCCGTTGCCGCGGTGG
TGCGGCCGTTTAGTGGCCCCCCGTATCACCTTCCGGAGAATCGTTAAAAC
ATTGGAAAAGCCTGACGACTTCGAGTCCACCCTCGTGTGTCCGTCGAAAG
CAAGGGATGGGCACTAGGAAGCACCCAAAACCAAACTGACTTGACCTGCT
GAGTCACCGGCGGTTGCTGACTCTCTCTGTCTCTTACCTATGCACGCGTG
TTGTTGTCGTTGTTGTTGTTGACTTTTCGTTGCCGCCGGTGGCTTCCTGG
GTGTTCCTCTTCAATCGTCCCGGCTTGAACGGCTACGGCTACGGCTACGG
TGACGGCAACGACGGGCGGATAACAGGCACGGCGAACGCCAGCAGAGCCT
GCAACCCCCTTCGCCTCCGAGAGGAGCTCATGAGGCTGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13388:746..1786+

>mRNA_H-canaliculatus_F_contig13388.2752.1 ID=mRNA_H-canaliculatus_F_contig13388.2752.1|Name=mRNA_H-canaliculatus_F_contig13388.2752.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=942bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13388:746..1786+ (Hapterophycus canaliculatus Oshoro5f female)
GACCGGTCGAGCTTGATCGTCGAGGCGATCTCGGGGCTTCTTGGGTGTGA
GCGAGGGAAGGTGACCAGGACCGGGATGCTGTCGCACGGGCTGGAGATTT
TCTCCCAGGAGGAGGAGGAGGAGGAGGAGCCGCCGTCGGGGGCAGCGGCG
GGGCCAGCGGCGGCACCAGCAGCAGCATTAGCATCGGCACCGGCAGCAGC
ATTAGCGTCAGCGGCAGGTTCCGACGTCGACGGCGGCGTTGGGCAGGGGG
GGTCGCGGCACGTTCAGAAGGGCGGCGCTGCTGCCGTCACGAACGAGCGT
GCGAGTAGGCTGACCGGGAAGAGGGTTGTGGGCGACGCGGTGGTGGTGCT
GGCGGGCGGCGGCGTGGAGCACGGGGCGGCCGGTTCCGGGGACGTGGATG
GGGACGGACCGGTCGAGCTTGATCGTCGAGGCGATCTCGGGGCTTCTTGG
GTGTGAGCGAGGGAAGGTGACCAGGACCGGGATGCTGTCGCACGGGCTGG
AGATTTTCTCCCAGGAGGAGGAGGAGGAGGAGGAGCCGCCGTCGGGGGCA
GCGGCGGGGCCAGCGGCGGCACCAGCAGCAGCATTAGCATCGGCACCGGC
AGCAGCATTAGCGTCAGCGGCAGGTTCCGACGTCGACGGCGGCGTTGGGC
AGGGGGGGTCGCGGCACGTTCAGAAGGGCGGCGCTGCTGCCGTCACGAAC
GAGCGTGCGAGTAGGCTGACCGGGAAGAGGGTTGTGGGCGACGCGGTGGT
GGTGCTGGCGGGCGGCGGCGTGGAGCACGGGGCGGCCGGTTCCGGGGACG
TGGATGGGGACGGCACGGCGAACGCCAGCAGAGCCTGCAACCCCCTTCGC
CTCCGAGAGGAGCTCATGAGGCTGAGGGCACGGCGAACGCCAGCAGAGCC
TGCAACCCCCTTCGCCTCCGAGAGGAGCTCATGAGGCTGAGG
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