mRNA_H-canaliculatus_F_contig13372.2745.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13372.2745.1
Unique NamemRNA_H-canaliculatus_F_contig13372.2745.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13372.2745.1 vs. uniprot
Match: A0A836C811_9STRA (ArgK protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C811_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.840e-14
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:  272 KVEVEHTVDMLVLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGELQ 412
            +VEVE TVD+L L+LPPA GDDLQGSKKGI+E AD +VVNK+DGEL+
Sbjct:  105 EVEVEQTVDVLTLLLPPASGDDLQGSKKGIIEAADLVVVNKADGELE 151
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BLAST of mRNA_H-canaliculatus_F_contig13372.2745.1 vs. uniprot
Match: A0A3R6YY14_9STRA (AAA domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6YY14_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.510e-12
Identity = 30/48 (62.50%), Postives = 44/48 (91.67%), Query Frame = 2 
Query:  272 KVEVEHTVDMLVLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGELQK 415
            ++ ++ TVD ++LM+PPAGGD+LQGSKKGI+E+AD +VVNK+DGEL++
Sbjct:  171 EIVIDDTVDFVMLMVPPAGGDELQGSKKGIMEIADIVVVNKADGELKR 218
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BLAST of mRNA_H-canaliculatus_F_contig13372.2745.1 vs. uniprot
Match: K3WLW7_GLOUD (AAA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLW7_GLOUD)

HSP 1 Score: 73.9 bits (180), Expect = 3.700e-12
Identity = 31/47 (65.96%), Postives = 44/47 (93.62%), Query Frame = 2 
Query:  272 KVEVEHTVDMLVLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGELQ 412
            ++ ++ TVDM++L++PPAGGD+LQGSKKGI+E+AD IVVNK+DGEL+
Sbjct:  210 EIVIDDTVDMVMLLVPPAGGDELQGSKKGIMEIADIIVVNKADGELE 256
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13372.2745.1 vs. uniprot
Match: A0A2D4BST0_PYTIN (LAO/AO transport system ATPase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BST0_PYTIN)

HSP 1 Score: 73.6 bits (179), Expect = 4.320e-12
Identity = 31/47 (65.96%), Postives = 44/47 (93.62%), Query Frame = 2 
Query:  272 KVEVEHTVDMLVLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGELQ 412
            ++ ++ TVDM++L++PPAGGD+LQGSKKGI+E+AD IVVNK+DGEL+
Sbjct:  174 EIIIDDTVDMVMLLVPPAGGDELQGSKKGIMEIADVIVVNKADGELK 220
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13372.2745.1 vs. uniprot
Match: A0A662XCX7_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCX7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.410e-12
Identity = 30/46 (65.22%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:  272 KVEVEHTVDMLVLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGEL 409
            ++ ++ TVDM++L++PPAGGD+LQG KKGIVE+AD +VVNK+DGEL
Sbjct:  178 EIVIDDTVDMVMLLVPPAGGDELQGQKKGIVEIADIVVVNKADGEL 223
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13372.2745.1 vs. uniprot
Match: A0A6G0W7J3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7J3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.080e-12
Identity = 30/47 (63.83%), Postives = 44/47 (93.62%), Query Frame = 2 
Query:  272 KVEVEHTVDMLVLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGELQ 412
            ++ ++ TVDM++L++PPAGGD+LQGSKKGI+E+AD +VVNK+DGEL+
Sbjct:  183 EIIIDDTVDMVMLLVPPAGGDELQGSKKGIMEIADVVVVNKADGELK 229
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13372.2745.1 vs. uniprot
Match: A0A485L5N5_9STRA (Aste57867_15959 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5N5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.430e-12
Identity = 30/47 (63.83%), Postives = 44/47 (93.62%), Query Frame = 2 
Query:  272 KVEVEHTVDMLVLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGELQ 412
            ++ ++ TVDM++L++PPAGGD+LQGSKKGI+E+AD +VVNK+DGEL+
Sbjct:  181 EIIIDDTVDMVMLLVPPAGGDELQGSKKGIMEIADVVVVNKADGELK 227
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13372.2745.1 vs. uniprot
Match: A0A024TKX0_9STRA (LAO/AO transport system ATPase n=11 Tax=Aphanomyces TaxID=100860 RepID=A0A024TKX0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.030e-11
Identity = 30/47 (63.83%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:  272 KVEVEHTVDMLVLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGELQ 412
            ++ ++ TVD ++LM+PPAGGD+LQGSKKGI+E+AD +VVNK+DGEL+
Sbjct:  171 EIVIDDTVDFVMLMVPPAGGDELQGSKKGIMEIADIVVVNKADGELK 217
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13372.2745.1 vs. uniprot
Match: A0A3L6VTF1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VTF1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.050e-11
Identity = 29/48 (60.42%), Postives = 44/48 (91.67%), Query Frame = 2 
Query:  272 KVEVEHTVDMLVLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGELQK 415
            ++ ++ TVD ++L++PPAGGD+LQGSKKGI+E+AD +VVNK+DGEL++
Sbjct:  187 EIVIDDTVDFVMLLVPPAGGDELQGSKKGIMEIADIVVVNKADGELKR 234
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13372.2745.1 vs. uniprot
Match: G4ZEZ6_PHYSP (AAA domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=G4ZEZ6_PHYSP)

HSP 1 Score: 72.4 bits (176), Expect = 1.080e-11
Identity = 30/46 (65.22%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:  272 KVEVEHTVDMLVLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGEL 409
            ++ ++ TVDM++L++PPAGGD+LQG KKGIVE+AD +VVNK+DGEL
Sbjct:  171 EIVIDDTVDMVMLLVPPAGGDELQGQKKGIVEIADIVVVNKADGEL 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13372.2745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C811_9STRA6.840e-1474.47ArgK protein (Fragment) n=1 Tax=Tribonema minus Ta... [more]
A0A3R6YY14_9STRA1.510e-1262.50AAA domain-containing protein n=4 Tax=Aphanomyces ... [more]
K3WLW7_GLOUD3.700e-1265.96AAA domain-containing protein n=1 Tax=Globisporang... [more]
A0A2D4BST0_PYTIN4.320e-1265.96LAO/AO transport system ATPase n=1 Tax=Pythium ins... [more]
A0A662XCX7_9STRA4.410e-1265.22Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A6G0W7J3_9STRA6.080e-1263.83Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L5N5_9STRA6.430e-1263.83Aste57867_15959 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TKX0_9STRA1.030e-1163.83LAO/AO transport system ATPase n=11 Tax=Aphanomyce... [more]
A0A3L6VTF1_9STRA1.050e-1160.42Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
G4ZEZ6_PHYSP1.080e-1165.22AAA domain-containing protein n=21 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13372contigH-canaliculatus_F_contig13372:2363..3063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size565
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13372.2745.1prot_H-canaliculatus_F_contig13372.2745.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13372 2472..2979 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929075.719372-UTR-H-canaliculatus_F_contig13372:2362..24711622929075.719372-UTR-H-canaliculatus_F_contig13372:2362..2471Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13372 2363..2471 -
1696845670.4900172-UTR-H-canaliculatus_F_contig13372:2362..24711696845670.4900172-UTR-H-canaliculatus_F_contig13372:2362..2471Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13372 2363..2471 -
1622929075.7790215-UTR-H-canaliculatus_F_contig13372:2979..30631622929075.7790215-UTR-H-canaliculatus_F_contig13372:2979..3063Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13372 2980..3063 -
1696845670.5180461-UTR-H-canaliculatus_F_contig13372:2979..30631696845670.5180461-UTR-H-canaliculatus_F_contig13372:2979..3063Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13372 2980..3063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929075.7471771-CDS-H-canaliculatus_F_contig13372:2471..25831622929075.7471771-CDS-H-canaliculatus_F_contig13372:2471..2583Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13372 2472..2583 -
1696845670.500107-CDS-H-canaliculatus_F_contig13372:2471..25831696845670.500107-CDS-H-canaliculatus_F_contig13372:2471..2583Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13372 2472..2583 -
1622929075.7640562-CDS-H-canaliculatus_F_contig13372:2719..29791622929075.7640562-CDS-H-canaliculatus_F_contig13372:2719..2979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13372 2720..2979 -
1696845670.5090778-CDS-H-canaliculatus_F_contig13372:2719..29791696845670.5090778-CDS-H-canaliculatus_F_contig13372:2719..2979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13372 2720..2979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13372.2745.1

>prot_H-canaliculatus_F_contig13372.2745.1 ID=prot_H-canaliculatus_F_contig13372.2745.1|Name=mRNA_H-canaliculatus_F_contig13372.2745.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
MLSSGKRFMYSLARPCHVISPACNQAHAGSFLPRSSRPSLSYIRANRFFL
TRRSNGSDRSINQGGGGAYRGYAGADASPCGRRRFARVQKGYRGGCRCYR
RQQVGRRAPKVSDWRSCACPFPL*
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mRNA from alignment at H-canaliculatus_F_contig13372:2363..3063-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13372.2745.1 ID=mRNA_H-canaliculatus_F_contig13372.2745.1|Name=mRNA_H-canaliculatus_F_contig13372.2745.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=701bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13372:2363..3063- (Hapterophycus canaliculatus Oshoro5f female)
GGGGAACAGAGATATAGGAAGAAAGAGACAGAGAGACGGCGAGGAAGAGA
GACCGAGAGAAACGGAAGTCGGGCAGGAGCGGCGATGCTGTCGAGTGGGA
AGCGTTTTATGTATAGCCTCGCCCGTCCCTGCCACGTTATTTCCCCGGCA
TGCAATCAAGCACATGCAGGAAGTTTCCTTCCCAGGTCGTCTCGTCCGTC
CCTTTCGTACATCCGTGCCAATCGGTTCTTTTTAACCCGTCGTTCTAATG
GGTCGGATCGATCAATCAATCAAGGTGGAGGTGGAGCATACCGTGGATAT
GCTGGTGCTGATGCTTCCCCCTGCGGGCGGCGACGATTTGCAAGGTGCGG
AATGTTCTTCACGGTTCGGGTTGATGGTGATCTTTCATTTCTATCCCCGT
AGTAGTGGTCAGTCTTTGTGCGAAGGTGCTCTACTGACGACTACCAAACA
TTGTTTGTGGATGCATGCGTCGTAAACCAGGGTCCAAAAAGGGTATCGTG
GAGGTTGCCGATGCTATCGTCGTCAACAAGTCGGACGGCGAGCTCCAAAA
GTGAGTGACTGGCGCTCCTGTGCCTGCCCCTTCCCTCTATAAACCGACAT
GAGAAATTTTCAGGGGTGATGGATGGGCCAGTCGTTCAAGCAGGCATCGA
CATAGCAATACGACAAACATCACAACCCTGATCGATCAATCCGCGGCCCT
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13372:2363..3063-

>mRNA_H-canaliculatus_F_contig13372.2745.1 ID=mRNA_H-canaliculatus_F_contig13372.2745.1|Name=mRNA_H-canaliculatus_F_contig13372.2745.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13372:2363..3063- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGTCGAGTGGGAAGCGTTTTATGTATAGCCTCGCCCGTCCCTGCCA
CGTTATTTCCCCGGCATGCAATCAAGCACATGCAGGAAGTTTCCTTCCCA
GGTCGTCTCGTCCGTCCCTTTCGTACATCCGTGCCAATCGGTTCTTTTTA
ACCCGTCGTTCTAATGGGTCGGATCGATCAATCAATCAAGGTGGAGGTGG
AGCATACCGTGGATATGCTGGTGCTGATGCTTCCCCCTGCGGGCGGCGAC
GATTTGCAAGATGCTGTCGAGTGGGAAGCGTTTTATGTATAGCCTCGCCC
GTCCCTGCCACGTTATTTCCCCGGCATGCAATCAAGCACATGCAGGAAGT
TTCCTTCCCAGGTCGTCTCGTCCGTCCCTTTCGTACATCCGTGCCAATCG
GTTCTTTTTAACCCGTCGTTCTAATGGGTCGGATCGATCAATCAATCAAG
GTGGAGGTGGAGCATACCGTGGATATGCTGGTGCTGATGCTTCCCCCTGC
GGGCGGCGACGATTTGCAAGGGTCCAAAAAGGGTATCGTGGAGGTTGCCG
ATGCTATCGTCGTCAACAAGTCGGACGGCGAGCTCCAAAAGTGAGTGACT
GGCGCTCCTGTGCCTGCCCCTTCCCTCTATAAGGTCCAAAAAGGGTATCG
TGGAGGTTGCCGATGCTATCGTCGTCAACAAGTCGGACGGCGAGCTCCAA
AAGTGAGTGACTGGCGCTCCTGTGCCTGCCCCTTCCCTCTATAA
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