prot_H-canaliculatus_F_contig13365.2739.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig13365.2739.1
Unique Nameprot_H-canaliculatus_F_contig13365.2739.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length149
Homology
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 3.530e-83
Identity = 146/152 (96.05%), Postives = 147/152 (96.71%), Query Frame = 0
Query:    1 RQVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPV---PVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 149
            R+VVDEAKTDE LRIELADELEQLR DQKNLVVIFAARGPEEGATPV   PVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV
Sbjct:  966 REVVDEAKTDETLRIELADELEQLRMDQKNLVVIFAARGPEEGATPVAQVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 1117          
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 1.200e-81
Identity = 144/152 (94.74%), Postives = 146/152 (96.05%), Query Frame = 0
Query:    1 RQVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPV---PVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 149
            R+VVDEAKTDE LRIELADELEQLR DQKNLVVIFAARGPEEGATPV   PVNIKRLVWN+QKMFQIK YGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV
Sbjct:  965 REVVDEAKTDETLRIELADELEQLRMDQKNLVVIFAARGPEEGATPVAQVPVNIKRLVWNSQKMFQIKSYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 1116          
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.740e-36
Identity = 74/151 (49.01%), Postives = 105/151 (69.54%), Query Frame = 0
Query:    2 QVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATP---VPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 149
            ++ D  K++E +R  L +EL QLR D   L+ IF+ +G EE A+P   +PVNI RL+WNAQK F +    E+ + P  ++R VR LC  + VVTG D LS EAQ NAT++F ILVRS ++AKR L  +RL++ AFD+V+GEI +K+MS++V
Sbjct:  958 EMADYCKSNEDVREALEEELAQLRDDHAMLLKIFSTKGSEESASPQAQLPVNIHRLIWNAQKKFDVDTNAETQLDPLKIVRDVRALCGRMIVVTGNDRLSQEAQYNATLMFYILVRSTLAAKRVLQEFRLSEEAFDWVLGEIESKYMSARV 1108          
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: Q1ACV3_ACEPM (DNA-directed RNA polymerase (Fragment) n=1 Tax=Acer palmatum TaxID=66201 RepID=Q1ACV3_ACEPM)

HSP 1 Score: 124 bits (311), Expect = 1.670e-32
Identity = 65/149 (43.62%), Postives = 98/149 (65.77%), Query Frame = 0
Query:    1 RQVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 149
            ++ +D+ KT + LR     E+++L  D+  L    A  G  + + P+PVN+KRL+WNAQK F++ P   SDM P  V+  + +L E L VV G+D+LSVEAQ NAT+ F IL+RS  ++KR L  +RL + AF+++IGEI ++F+ S V
Sbjct:   83 QEFIDBLKTIKELRDVFDAEVQKLEADRYQLATEIATSG--DSSWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAIDKLQERLKVVPGDDALSVEAQKNATLFFNILLRSTFASKRVLQEHRLTREAFEWLIGEIESRFLQSLV 229          
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: A0A6G0X279_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X279_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.020e-32
Identity = 70/151 (46.36%), Postives = 104/151 (68.87%), Query Frame = 0
Query:    2 QVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGP---EEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 149
            Q++ + +T+   +  L +E  QL+ D+ NL VI A+RG     + A  VPVN+KRL+ NAQ++F I     + + P +VI  VRELC  + VV G+D LSVEAQ NAT+LF+IL+RS ++ KR L+ YRLN +AF++++GEI +KF++S V
Sbjct:  815 QIIQDIQTNPVTQQLLREEYLQLQKDRLNLRVILASRGQGQESDHAAQVPVNVKRLIQNAQQLFSISMLHPTTLHPEHVINGVRELCGDIIVVKGDDHLSVEAQENATLLFQILLRSTLAVKRMLLEYRLNNSAFEWLLGEIKSKFLASLV 965          
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: A0A1V9Z1K8_9STRA (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z1K8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.410e-31
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 0
Query:   17 LADELEQLRTDQKNLVVIFAARGP---EEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 149
            L +E +QL  D+  L  I A+RGP    +    VPVNIKRLV NAQ++F I     S + P ++I  VR+LC  + VV G+D+LS+EAQ NAT+LF+ILVRS +S KR L+ +RLN  AF++++GEI +KF++S V
Sbjct:  995 LREEYQQLNLDRVKLRSILASRGPGQESDSVVQVPVNIKRLVQNAQQLFSISTLHPSTLHPRHIIEGVRDLCREIIVVKGDDNLSIEAQENATLLFQILVRSTLSVKRVLLEFRLNDTAFEWLMGEIKSKFLASLV 1130          
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: A0A3R6ZSG6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZSG6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.790e-31
Identity = 66/151 (43.71%), Postives = 105/151 (69.54%), Query Frame = 0
Query:    2 QVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGP---EEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 149
            Q++ + +++   ++ L DE  QL+ D+ NL VI  +RG     + A  VPVN++RL+ NAQ++F I     + ++P  +I+ VR+LC  + VV G+D LS+EAQ NAT+LF+IL+RS ++ KR L+ YRLN +AF++++GEI +KF+SS V
Sbjct:  316 QIITDIQSNPTTQLFLRDEYIQLQKDRLNLRVILGSRGQGQESDQAAQVPVNLRRLIQNAQQLFSISLLHPTTLNPQNIIQGVRDLCREIVVVQGDDHLSIEAQENATLLFQILLRSTLAVKRVLLEYRLNDSAFEWLMGEIKSKFLSSLV 466          
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: V4SDF7_CITCL (DNA-directed RNA polymerase subunit n=7 Tax=Sapindales TaxID=41937 RepID=V4SDF7_CITCL)

HSP 1 Score: 126 bits (316), Expect = 9.080e-31
Identity = 68/149 (45.64%), Postives = 97/149 (65.10%), Query Frame = 0
Query:    1 RQVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 149
            ++ +D+ KT + LR     E+++L  D+  L    A  G  + + P+PVN+KRL+WNAQK F++ P   SDM P  V+  V +L E L VV GED LSVEAQ NAT+ F IL+RS  ++KR L  +RL + AF++VIGEI ++F+ S V
Sbjct:  931 QEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG--DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1077          
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: Q1ACT9_IREHE (DNA-directed RNA polymerase (Fragment) n=1 Tax=Iresine herbstii TaxID=169210 RepID=Q1ACT9_IREHE)

HSP 1 Score: 119 bits (298), Expect = 1.480e-30
Identity = 64/146 (43.84%), Postives = 94/146 (64.38%), Query Frame = 0
Query:    4 VDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 149
            VD+ KT    R     E+++L  D+  L    A  G  + + P+PVN+KRL+WNAQK F++    +SDM P  ++  V +L E L VV GED LS EAQ NAT+ F IL+RS +++KR L  ++LN+ AF++V+GEI ++F+ S V
Sbjct:   86 VDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTG--DNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVVGEIESRFLQSLV 229          
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: Q1ACT6_MACIN (DNA-directed RNA polymerase (Fragment) n=5 Tax=Mesangiospermae TaxID=1437183 RepID=Q1ACT6_MACIN)

HSP 1 Score: 117 bits (293), Expect = 8.250e-30
Identity = 66/146 (45.21%), Postives = 91/146 (62.33%), Query Frame = 0
Query:    4 VDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 149
            V++ KT    R     E+++L  D+  L    A  G  E + P+PVN+KRL+WNAQK F++     SDM P  ++  V +L E L VV G+D LS EAQ NAT+LF IL+RS  ++KR L  Y L + AFD+VIGEI ++F+ S V
Sbjct:   86 VEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTG--ENSWPMPVNLKRLIWNAQKTFKLDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLLFNILLRSTFASKRVLKEYGLTREAFDWVIGEIESRFLQSLV 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE3.530e-8396.05DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI1.200e-8194.74DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CHC4_9STRA2.740e-3649.01DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
Q1ACV3_ACEPM1.670e-3243.62DNA-directed RNA polymerase (Fragment) n=1 Tax=Ace... [more]
A0A6G0X279_9STRA4.020e-3246.36DNA-directed RNA polymerase subunit n=3 Tax=Aphano... [more]
A0A1V9Z1K8_9STRA1.410e-3149.26DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A3R6ZSG6_9STRA4.790e-3143.71DNA-directed RNA polymerase (Fragment) n=2 Tax=Aph... [more]
V4SDF7_CITCL9.080e-3145.64DNA-directed RNA polymerase subunit n=7 Tax=Sapind... [more]
Q1ACT9_IREHE1.480e-3043.84DNA-directed RNA polymerase (Fragment) n=1 Tax=Ire... [more]
Q1ACT6_MACIN8.250e-3045.21DNA-directed RNA polymerase (Fragment) n=5 Tax=Mes... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007075RNA polymerase Rpb1, domain 6PFAMPF04992RNA_pol_Rpb1_6coord: 2..147
e-value: 3.6E-47
score: 160.7
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 5..149
NoneNo IPR availablePANTHERPTHR19376:SF52DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1coord: 5..149
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 20..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13365contigH-canaliculatus_F_contig13365:1432..2828 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13365.2739.1mRNA_H-canaliculatus_F_contig13365.2739.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig13365 1432..2828 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig13365.2739.1 ID=prot_H-canaliculatus_F_contig13365.2739.1|Name=mRNA_H-canaliculatus_F_contig13365.2739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=149bp
RQVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPVPVN
IKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVE
AQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007075RNA_pol_Rpb1_6