mRNA_H-canaliculatus_F_contig13365.2739.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE) HSP 1 Score: 276 bits (705), Expect = 3.530e-83 Identity = 146/152 (96.05%), Postives = 147/152 (96.71%), Query Frame = 1
Query: 1 RQVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPV---PVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 447
R+VVDEAKTDE LRIELADELEQLR DQKNLVVIFAARGPEEGATPV PVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV
Sbjct: 966 REVVDEAKTDETLRIELADELEQLRMDQKNLVVIFAARGPEEGATPVAQVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 1117
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI) HSP 1 Score: 271 bits (694), Expect = 1.200e-81 Identity = 144/152 (94.74%), Postives = 146/152 (96.05%), Query Frame = 1
Query: 1 RQVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPV---PVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 447
R+VVDEAKTDE LRIELADELEQLR DQKNLVVIFAARGPEEGATPV PVNIKRLVWN+QKMFQIK YGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV
Sbjct: 965 REVVDEAKTDETLRIELADELEQLRMDQKNLVVIFAARGPEEGATPVAQVPVNIKRLVWNSQKMFQIKSYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 1116
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.740e-36 Identity = 74/151 (49.01%), Postives = 105/151 (69.54%), Query Frame = 1
Query: 4 QVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATP---VPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 447
++ D K++E +R L +EL QLR D L+ IF+ +G EE A+P +PVNI RL+WNAQK F + E+ + P ++R VR LC + VVTG D LS EAQ NAT++F ILVRS ++AKR L +RL++ AFD+V+GEI +K+MS++V
Sbjct: 958 EMADYCKSNEDVREALEEELAQLRDDHAMLLKIFSTKGSEESASPQAQLPVNIHRLIWNAQKKFDVDTNAETQLDPLKIVRDVRALCGRMIVVTGNDRLSQEAQYNATLMFYILVRSTLAAKRVLQEFRLSEEAFDWVLGEIESKYMSARV 1108
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: Q1ACV3_ACEPM (DNA-directed RNA polymerase (Fragment) n=1 Tax=Acer palmatum TaxID=66201 RepID=Q1ACV3_ACEPM) HSP 1 Score: 124 bits (311), Expect = 1.670e-32 Identity = 65/149 (43.62%), Postives = 98/149 (65.77%), Query Frame = 1
Query: 1 RQVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 447
++ +D+ KT + LR E+++L D+ L A G + + P+PVN+KRL+WNAQK F++ P SDM P V+ + +L E L VV G+D+LSVEAQ NAT+ F IL+RS ++KR L +RL + AF+++IGEI ++F+ S V
Sbjct: 83 QEFIDBLKTIKELRDVFDAEVQKLEADRYQLATEIATSG--DSSWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAIDKLQERLKVVPGDDALSVEAQKNATLFFNILLRSTFASKRVLQEHRLTREAFEWLIGEIESRFLQSLV 229
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: A0A6G0X279_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X279_9STRA) HSP 1 Score: 130 bits (326), Expect = 4.020e-32 Identity = 70/151 (46.36%), Postives = 104/151 (68.87%), Query Frame = 1
Query: 4 QVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGP---EEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 447
Q++ + +T+ + L +E QL+ D+ NL VI A+RG + A VPVN+KRL+ NAQ++F I + + P +VI VRELC + VV G+D LSVEAQ NAT+LF+IL+RS ++ KR L+ YRLN +AF++++GEI +KF++S V
Sbjct: 815 QIIQDIQTNPVTQQLLREEYLQLQKDRLNLRVILASRGQGQESDHAAQVPVNVKRLIQNAQQLFSISMLHPTTLHPEHVINGVRELCGDIIVVKGDDHLSVEAQENATLLFQILLRSTLAVKRMLLEYRLNNSAFEWLLGEIKSKFLASLV 965
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: A0A1V9Z1K8_9STRA (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z1K8_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.410e-31 Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 1
Query: 49 LADELEQLRTDQKNLVVIFAARGP---EEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 447
L +E +QL D+ L I A+RGP + VPVNIKRLV NAQ++F I S + P ++I VR+LC + VV G+D+LS+EAQ NAT+LF+ILVRS +S KR L+ +RLN AF++++GEI +KF++S V
Sbjct: 995 LREEYQQLNLDRVKLRSILASRGPGQESDSVVQVPVNIKRLVQNAQQLFSISTLHPSTLHPRHIIEGVRDLCREIIVVKGDDNLSIEAQENATLLFQILVRSTLSVKRVLLEFRLNDTAFEWLMGEIKSKFLASLV 1130
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: A0A3R6ZSG6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZSG6_9STRA) HSP 1 Score: 127 bits (318), Expect = 4.790e-31 Identity = 66/151 (43.71%), Postives = 105/151 (69.54%), Query Frame = 1
Query: 4 QVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGP---EEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 447
Q++ + +++ ++ L DE QL+ D+ NL VI +RG + A VPVN++RL+ NAQ++F I + ++P +I+ VR+LC + VV G+D LS+EAQ NAT+LF+IL+RS ++ KR L+ YRLN +AF++++GEI +KF+SS V
Sbjct: 316 QIITDIQSNPTTQLFLRDEYIQLQKDRLNLRVILGSRGQGQESDQAAQVPVNLRRLIQNAQQLFSISLLHPTTLNPQNIIQGVRDLCREIVVVQGDDHLSIEAQENATLLFQILLRSTLAVKRVLLEYRLNDSAFEWLMGEIKSKFLSSLV 466
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: V4SDF7_CITCL (DNA-directed RNA polymerase subunit n=7 Tax=Sapindales TaxID=41937 RepID=V4SDF7_CITCL) HSP 1 Score: 126 bits (316), Expect = 9.080e-31 Identity = 68/149 (45.64%), Postives = 97/149 (65.10%), Query Frame = 1
Query: 1 RQVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 447
++ +D+ KT + LR E+++L D+ L A G + + P+PVN+KRL+WNAQK F++ P SDM P V+ V +L E L VV GED LSVEAQ NAT+ F IL+RS ++KR L +RL + AF++VIGEI ++F+ S V
Sbjct: 931 QEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG--DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1077
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: Q1ACT9_IREHE (DNA-directed RNA polymerase (Fragment) n=1 Tax=Iresine herbstii TaxID=169210 RepID=Q1ACT9_IREHE) HSP 1 Score: 119 bits (298), Expect = 1.480e-30 Identity = 64/146 (43.84%), Postives = 94/146 (64.38%), Query Frame = 1
Query: 10 VDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 447
VD+ KT R E+++L D+ L A G + + P+PVN+KRL+WNAQK F++ +SDM P ++ V +L E L VV GED LS EAQ NAT+ F IL+RS +++KR L ++LN+ AF++V+GEI ++F+ S V
Sbjct: 86 VDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTG--DNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVVGEIESRFLQSLV 229
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Match: Q1ACT6_MACIN (DNA-directed RNA polymerase (Fragment) n=5 Tax=Mesangiospermae TaxID=1437183 RepID=Q1ACT6_MACIN) HSP 1 Score: 117 bits (293), Expect = 8.250e-30 Identity = 66/146 (45.21%), Postives = 91/146 (62.33%), Query Frame = 1
Query: 10 VDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKV 447
V++ KT R E+++L D+ L A G E + P+PVN+KRL+WNAQK F++ SDM P ++ V +L E L VV G+D LS EAQ NAT+LF IL+RS ++KR L Y L + AFD+VIGEI ++F+ S V
Sbjct: 86 VEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTG--ENSWPMPVNLKRLIWNAQKTFKLDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLLFNILLRSTFASKRVLKEYGLTREAFDWVIGEIESRFLQSLV 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13365.2739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13365.2739.1 >prot_H-canaliculatus_F_contig13365.2739.1 ID=prot_H-canaliculatus_F_contig13365.2739.1|Name=mRNA_H-canaliculatus_F_contig13365.2739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=149bp RQVVDEAKTDEALRIELADELEQLRTDQKNLVVIFAARGPEEGATPVPVNback to top mRNA from alignment at H-canaliculatus_F_contig13365:1432..2828+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13365.2739.1 ID=mRNA_H-canaliculatus_F_contig13365.2739.1|Name=mRNA_H-canaliculatus_F_contig13365.2739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1397bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13365:1432..2828+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13365:1432..2828+ >mRNA_H-canaliculatus_F_contig13365.2739.1 ID=mRNA_H-canaliculatus_F_contig13365.2739.1|Name=mRNA_H-canaliculatus_F_contig13365.2739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=894bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13365:1432..2828+ (Hapterophycus canaliculatus Oshoro5f female)back to top |