mRNA_H-canaliculatus_F_contig13317.2710.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13317.2710.1
Unique NamemRNA_H-canaliculatus_F_contig13317.2710.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13317.2710.1 vs. uniprot
Match: D7FXV4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV4_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 3.910e-35
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 QDNEALFRSDFFPGLGWMLPRRVWEELSAEWPEAYWDDWLRSPPRRRERQFIRPEVCRAYHFGQRVRMTR 210
            +DN ALFRSDFFPGLGWMLPRRVW+EL+A+WPEAYWDDWLR P RR+ RQFIRPEVCR YHFGQ+   +R
Sbjct:  342 KDNRALFRSDFFPGLGWMLPRRVWDELAADWPEAYWDDWLRDPRRRKGRQFIRPEVCRTYHFGQKAGASR 411
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BLAST of mRNA_H-canaliculatus_F_contig13317.2710.1 vs. uniprot
Match: A0A6H5L776_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L776_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 6.360e-35
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    4 DNEALFRSDFFPGLGWMLPRRVWEELSAEWPEAYWDDWLRSPPRRRERQFIRPEVCRAYHFGQRV 198
            DN+ALFRSDFFPGLGWMLPRRVW+EL+A+WPEAYWDDWLR P RR+ RQFIRPEVCR +HFGQ+V
Sbjct:  245 DNKALFRSDFFPGLGWMLPRRVWDELAADWPEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQKV 309
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BLAST of mRNA_H-canaliculatus_F_contig13317.2710.1 vs. uniprot
Match: A0A7S2XX81_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX81_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.700e-29
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 QDNEALFRSDFFPGLGWMLPRRVWEELSAEWPEAYWDDWLRSPPRRRERQFIRPEVCRAYHFGQ 192
            +D E L+RSDFFPGLGWM+PRR+WEE   +WP  YWDDW+R PP+R+ R+ IRPE+CR +HFG+
Sbjct:   62 KDPEMLYRSDFFPGLGWMMPRRLWEEFGPKWPRGYWDDWIREPPQRKGRETIRPEICRTFHFGE 125
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BLAST of mRNA_H-canaliculatus_F_contig13317.2710.1 vs. uniprot
Match: A0A482SQF6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQF6_9ARCH)

HSP 1 Score: 115 bits (289), Expect = 3.590e-29
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 QDNEALFRSDFFPGLGWMLPRRVWEELSAEWPEAYWDDWLRSPPRRRERQFIRPEVCRAYHFGQR 195
            QD + L+RSDFFPGLGWML RR+WEEL  +WP+AYWDDWLR P +R+ RQFIRPEVCR  H+G R
Sbjct:  220 QDTKQLYRSDFFPGLGWMLSRRIWEELGPKWPKAYWDDWLREPAQRQSRQFIRPEVCRTLHYGAR 284
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BLAST of mRNA_H-canaliculatus_F_contig13317.2710.1 vs. uniprot
Match: A0A1U7WJI4_NICSY (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=2 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7WJI4_NICSY)

HSP 1 Score: 107 bits (267), Expect = 2.510e-27
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 QDNEALFRSDFFPGLGWMLPRRVWEELSAEWPEAYWDDWLRSPPRRRERQFIRPEVCRAYHFGQ 192
            QD  AL+RSDFFPGLGWML +  W+ELS +WP+AYWDDWLR     R RQFIRPEVCR Y+FG+
Sbjct:   36 QDPYALYRSDFFPGLGWMLSKSTWDELSPKWPKAYWDDWLRLKENHRGRQFIRPEVCRTYNFGE 99
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BLAST of mRNA_H-canaliculatus_F_contig13317.2710.1 vs. uniprot
Match: A0A2I0AEL0_9ASPA (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AEL0_9ASPA)

HSP 1 Score: 107 bits (266), Expect = 4.340e-27
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 QDNEALFRSDFFPGLGWMLPRRVWEELSAEWPEAYWDDWLRSPPRRRERQFIRPEVCRAYHFGQ 192
            +D +ALFRSDFFPGLGWML +  W ELS +WP+AYWDDWLR    R+ RQFIRPE+CR Y+FG+
Sbjct:   40 RDPKALFRSDFFPGLGWMLKKSTWVELSPKWPKAYWDDWLRRKDIRKNRQFIRPEICRTYNFGE 103
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BLAST of mRNA_H-canaliculatus_F_contig13317.2710.1 vs. uniprot
Match: A0A388LUK1_CHABU (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LUK1_CHABU)

HSP 1 Score: 110 bits (276), Expect = 5.730e-27
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    4 DNEALFRSDFFPGLGWMLPRRVWEELSAEWPEAYWDDWLRSPPRRRERQFIRPEVCRAYHFGQ 192
            D EAL+RSDFFPGLGWM+ R++WEEL  +WP AYWDDWLRSP  R+ RQ IRPEVCR Y+FG+
Sbjct:  292 DAEALYRSDFFPGLGWMMNRQLWEELRPKWPAAYWDDWLRSPQNRKGRQSIRPEVCRTYNFGE 354
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BLAST of mRNA_H-canaliculatus_F_contig13317.2710.1 vs. uniprot
Match: UPI00090170FD (alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090170FD)

HSP 1 Score: 105 bits (262), Expect = 1.540e-26
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    4 DNEALFRSDFFPGLGWMLPRRVWEELSAEWPEAYWDDWLRSPPRRRERQFIRPEVCRAYHFGQ 192
            D  AL+RSDFFPGLGWML R  W+ELS +WP+AYWDDWLR     + RQFIRPEVCR Y+FG+
Sbjct:   41 DPYALYRSDFFPGLGWMLKRSTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGE 103
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BLAST of mRNA_H-canaliculatus_F_contig13317.2710.1 vs. uniprot
Match: A0A1Q3ALD2_CEPFO (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3ALD2_CEPFO)

HSP 1 Score: 108 bits (270), Expect = 2.690e-26
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    4 DNEALFRSDFFPGLGWMLPRRVWEELSAEWPEAYWDDWLRSPPRRRERQFIRPEVCRAYHFGQ 192
            D+ AL+RSDFFPGLGWML R  W+ELS +WP+AYWDDWLR    R+ RQFIRPEVCR Y+FG+
Sbjct:  252 DSYALYRSDFFPGLGWMLSRSTWDELSPKWPKAYWDDWLRLKENRKGRQFIRPEVCRTYNFGE 314
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13317.2710.1 vs. uniprot
Match: A0A2P2KHJ2_RHIMU (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KHJ2_RHIMU)

HSP 1 Score: 106 bits (264), Expect = 2.900e-26
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    4 DNEALFRSDFFPGLGWMLPRRVWEELSAEWPEAYWDDWLRSPPRRRERQFIRPEVCRAYHFGQRV 198
            D  AL+RSDFFPGLGWML + +W+ELS +WP+AYWDDWLR     + RQFIRPEVCR Y+FG+ V
Sbjct:  227 DPYALYRSDFFPGLGWMLTKSIWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGELV 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13317.2710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXV4_ECTSI3.910e-3578.57Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A6H5L776_9PHAE6.360e-3583.08GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7S2XX81_9STRA2.700e-2964.06Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A482SQF6_9ARCH3.590e-2970.77Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1U7WJI4_NICSY2.510e-2768.75Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A2I0AEL0_9ASPA4.340e-2767.19Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A388LUK1_CHABU5.730e-2771.43Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
UPI00090170FD1.540e-2668.25alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A1Q3ALD2_CEPFO2.690e-2669.84Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A2P2KHJ2_RHIMU2.900e-2666.15Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13317contigH-canaliculatus_F_contig13317:244..456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.5e-29
Seed eggNOG ortholog2880.D7FXV4
Preferred nameMGAT1
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1413@1,KOG1413@2759
EC2.4.1.101
COG Functional cat.S
CAZyGT13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.0175507-CDS-H-canaliculatus_F_contig13317:243..4561622929071.0175507-CDS-H-canaliculatus_F_contig13317:243..456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13317 244..456 +
1696845668.538618-CDS-H-canaliculatus_F_contig13317:243..4561696845668.538618-CDS-H-canaliculatus_F_contig13317:243..456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13317 244..456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13317.2710.1prot_H-canaliculatus_F_contig13317.2710.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13317 244..456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13317.2710.1

>prot_H-canaliculatus_F_contig13317.2710.1 ID=prot_H-canaliculatus_F_contig13317.2710.1|Name=mRNA_H-canaliculatus_F_contig13317.2710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=71bp
QDNEALFRSDFFPGLGWMLPRRVWEELSAEWPEAYWDDWLRSPPRRRERQ
FIRPEVCRAYHFGQRVRMTR*
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mRNA from alignment at H-canaliculatus_F_contig13317:244..456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13317.2710.1 ID=mRNA_H-canaliculatus_F_contig13317.2710.1|Name=mRNA_H-canaliculatus_F_contig13317.2710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=213bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13317:244..456+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGACAACGAGGCGTTGTTCCGGAGCGATTTCTTCCCGGGGTTGGGGTG
GATGCTCCCTCGCAGGGTGTGGGAAGAGCTGTCGGCAGAGTGGCCGGAGG
CGTATTGGGACGACTGGCTGCGGTCCCCGCCTCGACGACGAGAGCGGCAG
TTTATTCGACCCGAAGTCTGCCGGGCGTACCACTTCGGCCAACGGGTGAG
GATGACCCGGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13317:244..456+

>mRNA_H-canaliculatus_F_contig13317.2710.1 ID=mRNA_H-canaliculatus_F_contig13317.2710.1|Name=mRNA_H-canaliculatus_F_contig13317.2710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=426bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13317:244..456+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGACAACGAGGCGTTGTTCCGGAGCGATTTCTTCCCGGGGTTGGGGTG
GATGCTCCCTCGCAGGGTGTGGGAAGAGCTGTCGGCAGAGTGGCCGGAGG
CGTATTGGGACGACTGGCTGCGGTCCCCGCCTCGACGACGAGAGCGGCAG
TTTATTCGACCCGAAGTCTGCCGGGCGTACCACTTCGGCCAACGGGTGAG
GATGACCCGGTAACAGGACAACGAGGCGTTGTTCCGGAGCGATTTCTTCC
CGGGGTTGGGGTGGATGCTCCCTCGCAGGGTGTGGGAAGAGCTGTCGGCA
GAGTGGCCGGAGGCGTATTGGGACGACTGGCTGCGGTCCCCGCCTCGACG
ACGAGAGCGGCAGTTTATTCGACCCGAAGTCTGCCGGGCGTACCACTTCG
GCCAACGGGTGAGGATGACCCGGTAA
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