mRNA_H-canaliculatus_F_contig13274.2675.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13274.2675.1
Unique NamemRNA_H-canaliculatus_F_contig13274.2675.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13274.2675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13274contigH-canaliculatus_F_contig13274:293..1941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size197
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.7680516-CDS-H-canaliculatus_F_contig13274:292..3801622929064.7680516-CDS-H-canaliculatus_F_contig13274:292..380Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13274 293..380 +
1696845666.3138185-CDS-H-canaliculatus_F_contig13274:292..3801696845666.3138185-CDS-H-canaliculatus_F_contig13274:292..380Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13274 293..380 +
1622929064.784834-CDS-H-canaliculatus_F_contig13274:1834..19411622929064.784834-CDS-H-canaliculatus_F_contig13274:1834..1941Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13274 1835..1941 +
1696845666.3281224-CDS-H-canaliculatus_F_contig13274:1834..19411696845666.3281224-CDS-H-canaliculatus_F_contig13274:1834..1941Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13274 1835..1941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13274.2675.1prot_H-canaliculatus_F_contig13274.2675.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13274 293..1941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13274.2675.1

>prot_H-canaliculatus_F_contig13274.2675.1 ID=prot_H-canaliculatus_F_contig13274.2675.1|Name=mRNA_H-canaliculatus_F_contig13274.2675.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
FLAKGRAACWSLGSARIAGSTWRAVFILIDGHRNSPSVELSGGVDLPGRA
VRFSRQELRMSRGR*
back to top

mRNA from alignment at H-canaliculatus_F_contig13274:293..1941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13274.2675.1 ID=mRNA_H-canaliculatus_F_contig13274.2675.1|Name=mRNA_H-canaliculatus_F_contig13274.2675.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1649bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13274:293..1941+ (Hapterophycus canaliculatus Oshoro5f female)
TTCCTTGCAAAGGGCCGGGCTGCTTGCTGGAGTCTGGGGTCCGCTCGCAT
CGCCGGCAGCACGTGGAGGGCGGTGTTCATCCTGATCGGTGGGTTTGTCA
AGGAGCAATCGTATCAATAGTGCATGCCGGTTGTTGGGGGGAGTGCTCGC
TCCTGGGTCGCTTCCTCAGTGCGGCTGTTACCCTTTTCTGTACGCGGTAC
GGACCTTCCAGTTGTGCACGCACCAACCACGTCAATCGTGGTTGGCGGCT
ACGGTTGGGGCGGCGCTCGGTCTTTGGCGTTCAGCGATATCTGTTTTCGC
AAGCACCGACCACATCAACAGCGCGTGGCAGCTGCTGCTGTTGAAAAAGC
GCGTGCTCCCGCGTCGCTTCCTCGGTGGTGGCTGTTACTCCTTCATGTTT
TTTTGGGAGCGATGCCTGCACTGATTTCTGCACGGACCAATCACATCACT
CTTGTGTTTGACCGTCGCTGTTACTGATACAGGTACCAACCACATAAATA
GTGCTTGGCGACTGCTGCGGCAGCTCTCGCCTGTTTCTCGGCGATGCCTG
TATCATTTCCTACATACACGTACCAACCACATCAATAGTGCTTGGCGGCT
GCTGTCGCGGCTGTCGCCCGTTCTTTCGGCGATGCCTGTATTAATTTCTA
CACGTACCGTCCACATCAATAGTGCTTGGCGGCTGCTGCGGCAGCTCTCG
CCTATTTTTTCGGCGATGCCTGTATTATTTCCCACACGTACCAACCACAT
CAATAGTGCTTGGCAGCTGCTGTTGCGGCTGTCGCCCGTTTTTCGGCGAT
GCCTGTATCATTTCCTACACGCACGAATTACATCAATAGTGCTTGGCGGC
TGCTGCTGCGGCTGTCGCCTGTTTTTCGGCGATGCCTGTATCATTTCCTA
CACATCAAGAGTGCTTTTGGCGGCCGCTGTTGCGGCTGTCGCCCTTTTCG
GCGATGCCTGTATCATTTCCTTCACGTACGAGTCACATCAATAGTGCTTG
GCGGCTGCTGTCGCGGCTGTCGCCCGTTGTTCGGCGATGCCTGTATTATT
TTCTACACGTACCAACTACATCAAGTGCTTGGCGGCTGCTGCGGTAGCTG
TCGCCTCTTTGTCGGCGATACCTGTATTGTTTTCTACACTTACCAACCAC
ATCAATAGTGCTTGGCGGCTGCTGTCGCGGCTCTCGCCCGTTGTTCGGCG
ATGCCTATATCATTTTGTACACGTACCAACCACATCCACACATAGTGCTT
GGCGGCTGCTGCGGCAGCTGTCGCCTGTTTGTCGGCGATGCCTGTTTCAT
TTCCTACACGCACCAACCACATCAATAGTGATTGGCGGCTGCTGTCGCGG
CTGTCGCCTGTTTTTCCGGCAATGCCTGTATTATTTTCAACACGCACCAA
CCACATCAATAGGTCGGGTTTTTTTTCGCGTTGCCTGTATACGTGCCGTG
CCGGGCTCTGTTGGCATGGCCACCATGGTACACGTTTATTGAAGCCATGT
GTCGATCCGGTGATGCCCTTGTCGCGTCGCGTGCCGCCTCAGATGGCCAT
CGAAACTCTCCCTCGGTCGAACTCTCGGGGGGGGTTGACCTGCCGGGGCG
GGCGGTCAGATTCTCGCGACAGGAACTCAGGATGTCACGGGGGCGGTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13274:293..1941+

>mRNA_H-canaliculatus_F_contig13274.2675.1 ID=mRNA_H-canaliculatus_F_contig13274.2675.1|Name=mRNA_H-canaliculatus_F_contig13274.2675.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13274:293..1941+ (Hapterophycus canaliculatus Oshoro5f female)
TTCCTTGCAAAGGGCCGGGCTGCTTGCTGGAGTCTGGGGTCCGCTCGCAT
CGCCGGCAGCACGTGGAGGGCGGTGTTCATCCTGATCGTTCCTTGCAAAG
GGCCGGGCTGCTTGCTGGAGTCTGGGGTCCGCTCGCATCGCCGGCAGCAC
GTGGAGGGCGGTGTTCATCCTGATCGATGGCCATCGAAACTCTCCCTCGG
TCGAACTCTCGGGGGGGGTTGACCTGCCGGGGCGGGCGGTCAGATTCTCG
CGACAGGAACTCAGGATGTCACGGGGGCGGTAAATGGCCATCGAAACTCT
CCCTCGGTCGAACTCTCGGGGGGGGTTGACCTGCCGGGGCGGGCGGTCAG
ATTCTCGCGACAGGAACTCAGGATGTCACGGGGGCGGTAA
back to top