mRNA_H-canaliculatus_F_contig13264.2673.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13264.2673.1
Unique NamemRNA_H-canaliculatus_F_contig13264.2673.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13264.2673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13264contigH-canaliculatus_F_contig13264:2160..3138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size141
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13264.2673.1prot_H-canaliculatus_F_contig13264.2673.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13264 2191..3138 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.4905062-UTR-H-canaliculatus_F_contig13264:2159..21901622929064.4905062-UTR-H-canaliculatus_F_contig13264:2159..2190Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13264 2160..2190 +
1696845666.165905-UTR-H-canaliculatus_F_contig13264:2159..21901696845666.165905-UTR-H-canaliculatus_F_contig13264:2159..2190Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13264 2160..2190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.5135503-CDS-H-canaliculatus_F_contig13264:2190..22471622929064.5135503-CDS-H-canaliculatus_F_contig13264:2190..2247Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13264 2191..2247 +
1696845666.1756012-CDS-H-canaliculatus_F_contig13264:2190..22471696845666.1756012-CDS-H-canaliculatus_F_contig13264:2190..2247Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13264 2191..2247 +
1622929064.5338116-CDS-H-canaliculatus_F_contig13264:3054..31381622929064.5338116-CDS-H-canaliculatus_F_contig13264:3054..3138Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13264 3055..3138 +
1696845666.1878748-CDS-H-canaliculatus_F_contig13264:3054..31381696845666.1878748-CDS-H-canaliculatus_F_contig13264:3054..3138Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13264 3055..3138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13264.2673.1

>prot_H-canaliculatus_F_contig13264.2673.1 ID=prot_H-canaliculatus_F_contig13264.2673.1|Name=mRNA_H-canaliculatus_F_contig13264.2673.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=47bp
MSQHEEGQDQLTAAREEIQTYIRMNPRLLRTELEDAVKLSYDLREGE
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mRNA from alignment at H-canaliculatus_F_contig13264:2160..3138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13264.2673.1 ID=mRNA_H-canaliculatus_F_contig13264.2673.1|Name=mRNA_H-canaliculatus_F_contig13264.2673.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=979bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13264:2160..3138+ (Hapterophycus canaliculatus Oshoro5f female)
ACAAGTGGTTGGGAGCGACAACACGGTCAACATGTCGCAACACGAAGAGG
GTCAGGATCAGCTCACAGCGGCACGCGAAGAAATCCAGGTGATGCATCGT
AAGATAGCAGAGCAAGAGAGAATTATCGAAGAAGGACGGGCCGGAGACGA
ACAGACAAGAGCAGCGCTCATCAGAGCCGCGGCCGCCGACCCGACGGTCG
CGGGCGCACACACAAGGACCGCTGACACGAACGAAGATCTAGGAACAGGA
CGTACCACAGAGGAGACACCACGTTCTCACAACGAACAAAACGACGGGTC
TACGCGTGACCTTGTACAAATGCTTAGTGATGCTTTGCTTGGGTCGAACG
CAGGTATGGTAAACTGGGGGACAAGGACGCAGACAAACATCGTGAAGTTT
TCGGGGACAATGGGGGACGAGGTCGCAGAGGCGATGGTTTTCATGGCAAG
AGCACAGTAGGTCTTCAAGGAGTTGGGGTATGAGAGCGTTGTTTACTCAA
ATGAATCCATCAAGGTGGGAGGGAAGGAGAGCTTGGCCGAGCTTGAGCAA
CGGCATCCGGCGCACAGAGTACGCCTTGCGCATGGAGCATACTCTTTCCT
GCTTAATAGCGTCACGAACTTGACCATGGTACACAGGATGCAGCTAGATG
GCACTCCCAACGGCGCCTGGAAGAATTTCGTAGATCATTACACGCCTCTT
GCGGACACCGAGCGAGAAAAATTGCGCATGGACTGGCATAATTTAATGCA
AGGGGTGAATGAGAACCCGAAGGATTTTTTTTCTCGTACGTCACTGCTTC
TGAGCAGGCTGGAAAGACACAATGTGATCATACTTGATGCTGAGTTCAAA
TCCCGAATGCTGCGTGCCCTTTCCTCCGACTGCGATCCGGAGAAGACATA
CATTCGTATGAATCCGCGCCTTTTACGTACAGAACTTGAGGACGCAGTAA
AGCTCTCGTACGATCTGCGGGAGGGGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13264:2160..3138+

>mRNA_H-canaliculatus_F_contig13264.2673.1 ID=mRNA_H-canaliculatus_F_contig13264.2673.1|Name=mRNA_H-canaliculatus_F_contig13264.2673.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=282bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13264:2160..3138+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGCAACACGAAGAGGGTCAGGATCAGCTCACAGCGGCACGCGAAGA
AATCCAGATGTCGCAACACGAAGAGGGTCAGGATCAGCTCACAGCGGCAC
GCGAAGAAATCCAGACATACATTCGTATGAATCCGCGCCTTTTACGTACA
GAACTTGAGGACGCAGTAAAGCTCTCGTACGATCTGCGGGAGGGGGAGAC
ATACATTCGTATGAATCCGCGCCTTTTACGTACAGAACTTGAGGACGCAG
TAAAGCTCTCGTACGATCTGCGGGAGGGGGAG
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