mRNA_H-canaliculatus_F_contig1326.2668.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1326.2668.1
Unique NamemRNA_H-canaliculatus_F_contig1326.2668.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1326.2668.1 vs. uniprot
Match: A0A6H5L5F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F6_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.200e-50
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 1 
Query:   76 RSPARVAEASG---SVQSAVRQRSLVEEDPDSERIPARTVCAAFSLLVLGLILLCMSAAFFARGHPGSLAFLILGIVVIIPGAHSSFQLFAAFRRWPGYDFDDMRGNGDFV 399
            RSPARVA+A     ++QS  RQRSLVE+ PDSERIPARTVCAAFSLLVLGLILLC+SA FFA  HPGS+AFL+LGIVVIIPGAHSSFQLFAAFRRWPGYDFDDMRG+GDFV
Sbjct:   12 RSPARVADAGAGERNLQSIGRQRSLVEDHPDSERIPARTVCAAFSLLVLGLILLCVSANFFAMKHPGSVAFLVLGIVVIIPGAHSSFQLFAAFRRWPGYDFDDMRGSGDFV 122
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BLAST of mRNA_H-canaliculatus_F_contig1326.2668.1 vs. uniprot
Match: D7G3N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N7_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.850e-9
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   73 SRSPARVAEASG---SVQSAVRQRSLVEEDPDSERIPARTVCAAFSLLVLGLI 222
            SRSPARVA A     ++QS  RQRSLVE+ PD+ERIPARTVCAAFSLLVLGL+
Sbjct:   11 SRSPARVAGAGAGGRNLQSIGRQRSLVEDHPDNERIPARTVCAAFSLLVLGLL 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1326.2668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5F6_9PHAE1.200e-5082.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3N7_ECTSI1.850e-973.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1326contigH-canaliculatus_F_contig1326:3123..6593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue3.9e-09
Seed eggNOG ortholog115417.EPrPW00000020885
EggNOG free text desc.Transmembrane protein. Source PGD
EggNOG OGs1MHQV@121069,2CXP8@1,2S4M2@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionProtein of unknown function DUF872, transmembrane
Ec32 orthologEc-00_006650.1
Exons3
Model size1332
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1326.2668.1prot_H-canaliculatus_F_contig1326.2668.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1326 4053..6545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.1965878-UTR-H-canaliculatus_F_contig1326:3122..40521622929064.1965878-UTR-H-canaliculatus_F_contig1326:3122..4052Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 3123..4052 -
1696845665.9946804-UTR-H-canaliculatus_F_contig1326:3122..40521696845665.9946804-UTR-H-canaliculatus_F_contig1326:3122..4052Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 3123..4052 -
1622929064.2596796-UTR-H-canaliculatus_F_contig1326:6545..65931622929064.2596796-UTR-H-canaliculatus_F_contig1326:6545..6593Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 6546..6593 -
1696845666.0425694-UTR-H-canaliculatus_F_contig1326:6545..65931696845666.0425694-UTR-H-canaliculatus_F_contig1326:6545..6593Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 6546..6593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.2099211-CDS-H-canaliculatus_F_contig1326:4052..41561622929064.2099211-CDS-H-canaliculatus_F_contig1326:4052..4156Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 4053..4156 -
1696845666.008661-CDS-H-canaliculatus_F_contig1326:4052..41561696845666.008661-CDS-H-canaliculatus_F_contig1326:4052..4156Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 4053..4156 -
1622929064.224931-CDS-H-canaliculatus_F_contig1326:5330..54091622929064.224931-CDS-H-canaliculatus_F_contig1326:5330..5409Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 5331..5409 -
1696845666.0222585-CDS-H-canaliculatus_F_contig1326:5330..54091696845666.0222585-CDS-H-canaliculatus_F_contig1326:5330..5409Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 5331..5409 -
1622929064.2462828-CDS-H-canaliculatus_F_contig1326:6374..65451622929064.2462828-CDS-H-canaliculatus_F_contig1326:6374..6545Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 6375..6545 -
1696845666.0328238-CDS-H-canaliculatus_F_contig1326:6374..65451696845666.0328238-CDS-H-canaliculatus_F_contig1326:6374..6545Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 6375..6545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1326.2668.1

>prot_H-canaliculatus_F_contig1326.2668.1 ID=prot_H-canaliculatus_F_contig1326.2668.1|Name=mRNA_H-canaliculatus_F_contig1326.2668.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
MSGRSGAASRSPARVAEASGSVQSAVRQRSLVEEDPDSERIPARTVCAAF
SLLVLGLILLCMSAAFFARGHPGSLAFLILGIVVIIPGAHSSFQLFAAFR
RWPGYDFDDMRGNGDFV*
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mRNA from alignment at H-canaliculatus_F_contig1326:3123..6593-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1326.2668.1 ID=mRNA_H-canaliculatus_F_contig1326.2668.1|Name=mRNA_H-canaliculatus_F_contig1326.2668.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3471bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1326:3123..6593- (Hapterophycus canaliculatus Oshoro5f female)
TGAGCCCGCGAACATCGCGTGAAACCTGTGGGGGAGGGGAGGAGGACCAT
GTCTGGGAGGTCGGGGGCGGCATCCCGCTCGCCGGCGCGGGTCGCGGAGG
CATCTGGGAGCGTCCAGTCGGCCGTGAGACAACGGTCCCTGGTGGAAGAG
GACCCAGACAGCGAGAGAATCCCGGCGAGAACCGTGTGCGCCGCCTTCTC
GCTGCTCGTTCTCGGTCTGGTGAGACAAATTTAGGGGGAGAGGGAGGGAG
AGAGACAGGTTCGCATGGGACTTAACGACCTAACCCCGATGAAGTGTAAG
GGGCTCCAGGGTATCTGAGGGTTTTCGGTCTGCTGGAATGTGATGACGTG
ATGCCAGTCCTGTCTCAATGAAAGAAGGCTGCACGAAGATGCTCTCTCTT
CTTGTAAACAAAAATTGTACATTGTACCTCTTTTTGTTTCTCCAGAGGGA
GAGAGCCCGTGGGGTGGAAATCTCCGGCCTCGCAAAAAAGTGGTTGTTGT
ACATAGCTCCAACCAGAGGAGCGGCCGTTGTTGTTTGAAACACGTCGCAG
TTCAACGGGTGCAGCCACCAACCATCCCCCGGCTGAATTGGGACAACGTC
CAGAGATGCAGTTCAGAGTATGTACAAGCACGCCGCAGAGTGATGTCGGC
GGTCGTTTTTTGTCCTCATGCACAGCTAGCTGGCAAGACGGATTCTTCCC
GTCGGCTTCGGCGTCGGAATTACCGCACAGGGGTCCACTGATGAGGATCC
GGTTTGGTATCGCAACTATTGGCCACGAGCATGATGCGCGCGAGCAAACG
CTGATTTCTGCATTTATTCCTGGAAGCTGAGCGCGGCGCCGCGTGTCCCA
CGAAAAGCTCTGTAGTTTCAGACCTCAACGAACACTAGTATCCACATGCT
TACCAATCCACCACAGTCTACCAACCCAACCGGGTCTGGAGCGAAGTTCT
GGCACAAACTCTTTCAAGAAAGCGTTCAACGGCGGTCAATTTTGAGACGG
GGAGGGGGGCTGATCCCGTCGCTCGTCGAAATACATATGAAGACACCCAC
GAAATAAAGCCATGTTACGTTACCGCAGCTACGGGTACTGCTGCACGTCG
GAAATGGTGACTAAATTTAACTCCGCCAAACACTACCCACCCAACCGCGA
ACACCCGCTACGACCACTCAAACGTTCGCGACAGATCCTCCTGTGCATGA
GCGCAGCTTTCTTCGCAAGAGGGCACCCGGGCTCGCTCGCCTTTTTGATC
CTCGGGATTGTCGGTGAGCTAGATGAACACTTCACGTGGCTTGGTTCTCG
TTGGGGAAGGGGGGGGCTCAGGGCGGGTGTACCCTACGCTATTGGCGCGT
AGTTGATCGGCGTTGATCGGAGGTTCTGAACGCTCATGAGTATCTCGCGA
AGCGTCCGCTCGTCGCTGTTTTGCATGCCTCCTTTTCGCCAACACGTGTC
TGCTCGATGGCGTCCGATGTGCGTGCACGGGCCGACCTTGTACCATCGTT
TCTTCGTTGTATCAACGGAGAGAGCGACACAGCTCGAAATAAACGTGCAG
AGCGAGTCTGCCTCCGGCCTCGTTGATTGCACCGCAGCTTGGCTAGAGTT
GATGACGTGCGGTTGGCGGTTTAGTTTCGGGTATCGACGACAAGAGGGAG
CCACTAATAAAGGCGCCTTTTCTGCAATTGCAGTCCTGTTGGCCGACGCC
GATTCCTGTCCTCTGTAAGTTATTTCGTGACGGCATTTGATCGGGAAGGG
ATGCATGTATGGTAAATTAGCGTGTGAAGCCCTTCTCAGTCAGTGTTCTC
CGGAGACGTACGCACGTGGTCGGGTGTGTCGTGAACAGGAACCCTCCCCG
AAGCCCCGAAGTAGCACGACGATGATGAGTCTGCAGGGCCCGCTGCAAAA
AAAAGGAAGGATCCCCACGACGCAGCTGCCTTTTATCGCGTTTGCGGCTG
CCTAAGCCAAAACATGTGATTGATAACAGAGTGTTAGGGTAGGGGTTTAC
GGTCCGGGTCAGGTGTAGGGCCAAGGTTGTGTCTATTCGGAGTTGGTCTG
ACACGAAGCGTGGCTTGGACAGCCACCAGTCGCGAGGAACCACGAACAAG
GCGATACAGACCGTCAGTCCCGCGCACGTGCGAAGCGCGAAGAGAGATTT
CCGCTGGAGGTGGCGAAGGCGGCCAGGAGGAAGGTTATCGTTATCCTCGC
GAGAGAAACGAGGAGTCCTCCCACCTTGAGGCTTCGCTCGTCTCGGAAGA
AACCAGGAGTCCTCCTCTTGAGTTTTCGGCGAGGGAGCACCCTCCGCACG
AATCTTGTCATGGCTTTCGTGCTTGAAAATTACGAAAAAGGGACGCAAGA
CGAAAAAAATAACCTTGACAGCCCGCCGCTCTCAGTCGGGATCCACCCCC
GTTTTCTGATGCCGATGCTACTCTCTCCGCGCTGCAGTTATCATTCCTGG
CGCGCACAGCAGCTTCCAGCTTTTCGCGGCGTTCCGGAGATGGCCGGGTT
ACGACTTCGATGACATGCGCGGGAACGGGGACTTCGTTTGAGAGATCCAT
ATCATGTGTAGATTCGATCGCTTTTTTCCATTCCAATTTTTTATTTTTTA
TTTGCTGCTCGTTGTAATTCGTCAGCAGTGTATGTAAGCGTGGAAAAAGG
GTCGGCCCTTGTCTATGTTCGTGCCGAGAGGAGTTCAGCGGACGCGAAGC
GGGCAGTTTTCGTATTGTGCATCCATGCTCGTCTTTCGTGAGGCCGGATC
GGATGTAGATTCTGCCGCTCTTGTTGTCTGCCAGCTTGTCGTACACTGCC
GCCTCAGTTAGGTCATGACGTCATGACCTTCAGCGCCTCCGCCTGTTGAT
ACGTCGCTCGTTGCATCTAGGACGCCTGGTTTGTTGTTTCTGTTTGGCAC
GCACGCCTCTACCTGCCGCTTCTCCGACATCCGAAAGAGAGCGGTCGGAC
ATAGGCGGCGACCGCCGCGGTCTTGTTTATTATGACGTTTGTTTGAATGG
TTGTGAGCGTGAATCGAGGCAGGAATCGAGACACACGCTTTCTTGTGATT
TTGCGTACGAAAGGGACGGCTTCCGGAGCGCGCGCGCGCGCACGTGTTGG
AGCTCCCTGCCTTCAGAGTGTAGTGGGACCGGTTCGGAGACATGCCTCAG
TACCGTTGAAGTATTGTGTTGAAACAAATAAAAATGTTGAAATCTTTCTG
GAGAACTTCGCTGAAGTTCAACAGCAAAATCCAGGGATTTTGGTCCTCGG
CACGGCTTGAAAGTCAAAAGAACGAAGAGGGTGGATATTCTGTGGGGAGC
CGTGGATGGTTGTTTTGGGGAGCTTGAGCTGATCCTCCCTCGTGTCCGTG
TGCGCGTGCAGGATCGACGCGCCTGTTGAACACATGGAATACAAAAAAAA
AAAAAATGATATCGCGTACATACGCTTCTCCTAGCGTTTCAACACGAAAC
AACCGATTTTTTTTATCGTTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1326:3123..6593-

>mRNA_H-canaliculatus_F_contig1326.2668.1 ID=mRNA_H-canaliculatus_F_contig1326.2668.1|Name=mRNA_H-canaliculatus_F_contig1326.2668.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1326:3123..6593- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTGGGAGGTCGGGGGCGGCATCCCGCTCGCCGGCGCGGGTCGCGGA
GGCATCTGGGAGCGTCCAGTCGGCCGTGAGACAACGGTCCCTGGTGGAAG
AGGACCCAGACAGCGAGAGAATCCCGGCGAGAACCGTGTGCGCCGCCTTC
TCGCTGCTCGTTCTCGGTCTGATGTCTGGGAGGTCGGGGGCGGCATCCCG
CTCGCCGGCGCGGGTCGCGGAGGCATCTGGGAGCGTCCAGTCGGCCGTGA
GACAACGGTCCCTGGTGGAAGAGGACCCAGACAGCGAGAGAATCCCGGCG
AGAACCGTGTGCGCCGCCTTCTCGCTGCTCGTTCTCGGTCTGATCCTCCT
GTGCATGAGCGCAGCTTTCTTCGCAAGAGGGCACCCGGGCTCGCTCGCCT
TTTTGATCCTCGGGATTGTCGATCCTCCTGTGCATGAGCGCAGCTTTCTT
CGCAAGAGGGCACCCGGGCTCGCTCGCCTTTTTGATCCTCGGGATTGTCG
TTATCATTCCTGGCGCGCACAGCAGCTTCCAGCTTTTCGCGGCGTTCCGG
AGATGGCCGGGTTACGACTTCGATGACATGCGCGGGAACGGGGACTTCGT
TTGATTATCATTCCTGGCGCGCACAGCAGCTTCCAGCTTTTCGCGGCGTT
CCGGAGATGGCCGGGTTACGACTTCGATGACATGCGCGGGAACGGGGACT
TCGTTTGA
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