mRNA_H-canaliculatus_F_contig10252.263.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10252.263.1
Unique NamemRNA_H-canaliculatus_F_contig10252.263.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10252.263.1 vs. uniprot
Match: A0A6H5KRZ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRZ7_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.500e-28
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:   25 QVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSREADPDTYLHRIGRTGRFGRRGVAINLI 204
            +VLLTTNVLSRGVDVPAVSLVVNYDMPTMGYS++ DPDTYLHRIGRTGRFGRRGVAINLI
Sbjct:  446 KVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSQDPDPDTYLHRIGRTGRFGRRGVAINLI 505
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BLAST of mRNA_H-canaliculatus_F_contig10252.263.1 vs. uniprot
Match: A0A1X6NJK1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJK1_PORUM)

HSP 1 Score: 97.8 bits (242), Expect = 2.860e-22
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 DDVDSTALQVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSREADPDTYLHRIGRTGRFGRRGVAINLI 204
            D+  S   +VL+TTNVLSRGVDV  V++V+NYDMP  G +R ADP+TY+HR+GRTGRFGR+G+AINL+
Sbjct:  407 DEFRSGTTRVLVTTNVLSRGVDVAGVTVVINYDMPLEGVTRRADPETYIHRVGRTGRFGRKGIAINLV 474
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BLAST of mRNA_H-canaliculatus_F_contig10252.263.1 vs. uniprot
Match: A0A835ZGD2_9STRA (ATP-dependent RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGD2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.880e-22
Identity = 44/60 (73.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:   25 QVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSREADPDTYLHRIGRTGRFGRRGVAINLI 204
            +VL+TTNVL+RGVDVPAV+LVVNYDMP +G S++ D ++YLHRIGRTGRFGR+GVAIN +
Sbjct:  281 KVLITTNVLARGVDVPAVTLVVNYDMPYLGRSKDPDYESYLHRIGRTGRFGRKGVAINFV 340
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BLAST of mRNA_H-canaliculatus_F_contig10252.263.1 vs. uniprot
Match: A0A2V3IHZ3_9FLOR (ATP-dependent RNA helicase DBP5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHZ3_9FLOR)

HSP 1 Score: 95.1 bits (235), Expect = 2.520e-21
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 DDVDSTALQVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSREADPDTYLHRIGRTGRFGRRGVAINLI 204
            D+  +   +VL+TTNVLSRGVDV AV+ V+NYD+PT  + R ADP+TYLHRIGRTGRFGR+G+AIN +
Sbjct:  391 DEFRAGITRVLITTNVLSRGVDVLAVNAVINYDLPTDKFGRNADPETYLHRIGRTGRFGRKGIAINFV 458
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BLAST of mRNA_H-canaliculatus_F_contig10252.263.1 vs. uniprot
Match: G8BAY2_CANPC (Uncharacterized protein n=1 Tax=Candida parapsilosis (strain CDC 317 / ATCC MYA-4646) TaxID=578454 RepID=G8BAY2_CANPC)

HSP 1 Score: 94.4 bits (233), Expect = 4.750e-21
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 DDVDSTALQVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSREADPDTYLHRIGRTGRFGRRGVAINLI 204
            DD      +VL+TTNVL+RG+D+ +VS+VVNYD+P MG  READP TYLHRIGRTGRFGR GV+++ +
Sbjct:  384 DDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPVMGPKREADPSTYLHRIGRTGRFGRVGVSVSFV 451
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BLAST of mRNA_H-canaliculatus_F_contig10252.263.1 vs. uniprot
Match: A0A178AF32_9PLEO (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Stagonospora sp. SRC1lsM3a TaxID=765868 RepID=A0A178AF32_9PLEO)

HSP 1 Score: 93.6 bits (231), Expect = 8.420e-21
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 DDVDSTALQVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSREADPDTYLHRIGRTGRFGRRGVAINLI 204
            D+  + A +VL+TTNVL+RG+DV +V++V+NYD+PTM   R+ADP+TYLHRIGRTGRFGR GVA+  +
Sbjct:  350 DEFRTGAAKVLITTNVLARGIDVESVTMVINYDVPTMADGRQADPETYLHRIGRTGRFGRVGVALTFV 417
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BLAST of mRNA_H-canaliculatus_F_contig10252.263.1 vs. uniprot
Match: UPI001E1E038B (LOW QUALITY PROTEIN: ATP-dependent RNA helicase DBP5-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E038B)

HSP 1 Score: 93.2 bits (230), Expect = 1.140e-20
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 DDVDSTALQVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSREADPDTYLHRIGRTGRFGRRGVAINLI 204
            D+      +VL+TTNVLSRGVDVPAV+ V+NYD+P   +  +ADP+ YLHRIGRTGRFGR+G+AINL+
Sbjct:  367 DEFRQGTTRVLVTTNVLSRGVDVPAVTAVINYDLPYDQHRHKADPEVYLHRIGRTGRFGRKGIAINLV 434
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10252.263.1 vs. uniprot
Match: DBP5_PHANO (ATP-dependent RNA helicase DBP5 n=3 Tax=Phaeosphaeriaceae TaxID=5020 RepID=DBP5_PHANO)

HSP 1 Score: 93.2 bits (230), Expect = 1.150e-20
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 DDVDSTALQVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSREADPDTYLHRIGRTGRFGRRGVAINLI 204
            D   S   +VL+TTNVL+RG+DV +V++V+NYD+PTM   READP+TYLHRIGRTGRFGR GVA+  +
Sbjct:  347 DQFRSGEAKVLITTNVLARGIDVESVTMVINYDVPTMADGREADPETYLHRIGRTGRFGRVGVALTFV 414
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10252.263.1 vs. uniprot
Match: A0A7C8M2B5_9PLEO (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Massariosphaeria phaeospora TaxID=100035 RepID=A0A7C8M2B5_9PLEO)

HSP 1 Score: 93.2 bits (230), Expect = 1.260e-20
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 DDVDSTALQVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSREADPDTYLHRIGRTGRFGRRGVAINLI 204
            D   S A +VL+TTNVLSRG+DV +V++V+NYD+PT   +R+ADP+TYLHRIGRTGRFGR GVA+  +
Sbjct:  379 DQFRSGAAKVLITTNVLSRGIDVQSVTMVINYDVPTTADNRDADPETYLHRIGRTGRFGRVGVALTFV 446
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10252.263.1 vs. uniprot
Match: A0A813D828_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813D828_POLGL)

HSP 1 Score: 87.0 bits (214), Expect = 2.190e-20
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 DDVDSTALQVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSREADPDTYLHRIGRTGRFGRRGVAINLI 204
            D+  +   +VL+ T+VL+RG+DVP V+LVVNY+MP    SR AD +TYLHR+GRTGRFG RG+A+NL+
Sbjct:   32 DEFRNGVTRVLIATDVLARGIDVPQVTLVVNYEMPVSYQSRGADYETYLHRVGRTGRFGLRGIAVNLV 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10252.263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRZ7_9PHAE1.500e-2893.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1X6NJK1_PORUM2.860e-2264.71Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A835ZGD2_9STRA9.880e-2273.33ATP-dependent RNA helicase n=1 Tax=Tribonema minus... [more]
A0A2V3IHZ3_9FLOR2.520e-2164.71ATP-dependent RNA helicase DBP5 n=1 Tax=Gracilario... [more]
G8BAY2_CANPC4.750e-2163.24Uncharacterized protein n=1 Tax=Candida parapsilos... [more]
A0A178AF32_9PLEO8.420e-2161.76p-loop containing nucleoside triphosphate hydrolas... [more]
UPI001E1E038B1.140e-2063.24LOW QUALITY PROTEIN: ATP-dependent RNA helicase DB... [more]
DBP5_PHANO1.150e-2063.24ATP-dependent RNA helicase DBP5 n=3 Tax=Phaeosphae... [more]
A0A7C8M2B5_9PLEO1.260e-2063.24P-loop containing nucleoside triphosphate hydrolas... [more]
A0A813D828_POLGL2.190e-2058.82Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10252contigH-canaliculatus_F_contig10252:194..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue7.2e-24
Seed eggNOG ortholog2880.D7G332
Preferred nameDDX25
KEGG koko:K09097,ko:K13126,ko:K18655,ko:K18656
KEGG Pathwayko03013,ko03015,ko03018,ko04066,ko04934,ko05200,ko05204,ko05211,map03013,map03015,map03018,map04066,map04934,map05200,map05204,map05211
GOsGO:0000003,GO:0000166,GO:0002181,GO:0002184,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005681,GO:0005730,GO:0005737,GO:0005844,GO:0005933,GO:0005934,GO:0006139,GO:0006396,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008026,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010501,GO:0010556,GO:0010604,GO:0010608,GO:0010628,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016973,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0030154,GO:0030427,GO:0030554,GO:0030587,GO:0030684,GO:0030687,GO:0031090,GO:0031323,GO:0031326,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032991,GO:0033036,GO:0033391,GO:0034248,GO:0034613,GO:0034641,GO:0034645,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042623,GO:0042886,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0044703,GO:0045184,GO:0045495,GO:0046483,GO:0046907,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048522,GO:0048609,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0060255,GO:0060293,GO:0065007,GO:0070013,GO:0070035,GO:0070727,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0090702,GO:0097159,GO:0097367,GO:0099120,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990904,GO:2000112
EggNOG free text desc.RNA helicase activity
EggNOG OGsKOG0332@1,KOG0332@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928654.357961-CDS-H-canaliculatus_F_contig10252:193..3971622928654.357961-CDS-H-canaliculatus_F_contig10252:193..397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10252 194..397 +
1696845515.4927027-CDS-H-canaliculatus_F_contig10252:193..3971696845515.4927027-CDS-H-canaliculatus_F_contig10252:193..397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10252 194..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10252.263.1prot_H-canaliculatus_F_contig10252.263.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10252 194..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10252.263.1

>prot_H-canaliculatus_F_contig10252.263.1 ID=prot_H-canaliculatus_F_contig10252.263.1|Name=mRNA_H-canaliculatus_F_contig10252.263.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=68bp
DDVDSTALQVLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSREADPDTYLH
RIGRTGRFGRRGVAINLI
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mRNA from alignment at H-canaliculatus_F_contig10252:194..397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10252.263.1 ID=mRNA_H-canaliculatus_F_contig10252.263.1|Name=mRNA_H-canaliculatus_F_contig10252.263.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=204bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10252:194..397+ (Hapterophycus canaliculatus Oshoro5f female)
GACGACGTCGATTCCACGGCGCTACAGGTTCTGCTGACCACGAACGTTCT
CTCGAGAGGCGTGGACGTCCCCGCGGTGTCTCTCGTGGTGAACTACGACA
TGCCCACCATGGGCTACTCGAGGGAGGCCGACCCCGACACCTACCTGCAC
AGGATCGGCCGCACGGGGCGCTTCGGCCGCAGGGGGGTGGCCATCAATCT
CATC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10252:194..397+

>mRNA_H-canaliculatus_F_contig10252.263.1 ID=mRNA_H-canaliculatus_F_contig10252.263.1|Name=mRNA_H-canaliculatus_F_contig10252.263.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=408bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10252:194..397+ (Hapterophycus canaliculatus Oshoro5f female)
GACGACGTCGATTCCACGGCGCTACAGGTTCTGCTGACCACGAACGTTCT
CTCGAGAGGCGTGGACGTCCCCGCGGTGTCTCTCGTGGTGAACTACGACA
TGCCCACCATGGGCTACTCGAGGGAGGCCGACCCCGACACCTACCTGCAC
AGGATCGGCCGCACGGGGCGCTTCGGCCGCAGGGGGGTGGCCATCAATCT
CATCGACGACGTCGATTCCACGGCGCTACAGGTTCTGCTGACCACGAACG
TTCTCTCGAGAGGCGTGGACGTCCCCGCGGTGTCTCTCGTGGTGAACTAC
GACATGCCCACCATGGGCTACTCGAGGGAGGCCGACCCCGACACCTACCT
GCACAGGATCGGCCGCACGGGGCGCTTCGGCCGCAGGGGGGTGGCCATCA
ATCTCATC
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