mRNA_H-canaliculatus_F_contig13169.2607.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13169.2607.1
Unique NamemRNA_H-canaliculatus_F_contig13169.2607.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13169.2607.1 vs. uniprot
Match: A0A6H5K704_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K704_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 7.410e-44
Identity = 136/271 (50.18%), Postives = 162/271 (59.78%), Query Frame = 1 
Query:  214 TAFDCATHPASVESTWLYVECDECSEVADVAVVCTAAVSTDDLLSSGDGGDGVFTLPVIIGIVAGALVFCLCLGFCFCQHRRRVHKGSRTF-DDSQHSRVSHKPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFIAAADEAVGSPIPLAAAGAVGRAGGRDGSGD----------------IVLLARGRGAGSFKPNHA---TPAFEGIFASRNGGXXXXXXXXXXXXXXXPGPTSATALPHPAAVEMAKYSNPEMLRKDSMA 966
            + FDCATHPASVESTWLYV+CD+C+EVA ++VVCT+     ++L+S DGGDG  T+P II I  G L+  LC+GFC    ++R HKGS TF DDSQHS    K              XXXXXXXXXXXXX          A+  A  E V SP  +AA G +G +G R   GD                  LLA+G  A SFKPNH    TPA+EGIFA R G  XXXXXXXX         T++ ALPHPAAVEM+ Y+ P +LRKDSMA
Sbjct:  126 STFDCATHPASVESTWLYVDCDDCAEVATISVVCTSP----EVLTSDDGGDGDLTIPAIIAIAVGGLIVVLCVGFCVFHCKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVADXXXXXXXXXXXXXAVPLP-----AYTGAIGETVESP--MAAGGTMGDSGDRGVGGDGPRNVRGGIGVSGGSSAGLLAKGSNAKSFKPNHGGVNTPAYEGIFAPRGGAGXXXXXXXXTA-------TTSAALPHPAAVEMSNYAKP-VLRKDSMA 377
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BLAST of mRNA_H-canaliculatus_F_contig13169.2607.1 vs. uniprot
Match: D8LHN9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN9_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 3.880e-33
Identity = 114/262 (43.51%), Postives = 135/262 (51.53%), Query Frame = 1 
Query:  106 ANDAGDNL-VVSDHDRIESMGRCNHGTNGRMHWSRADTAFDCATHPASVESTWLYVECDECSEVADVAVVCTAAVSTDD-LLSSGDGGDGVFTLPVIIGIVAGALVFCLCLGFCFCQHRRRVHKGSRTF-DDSQHSRVSHKPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFIAAADEAVGSPIPLAAAGAVGRAGGR----DGSGDIV------------LLARGRGAGSFKPNHA---TPAFEGIFASRNGG 825
            AND    + +++D   +E  G   + T            FDCATHPASVESTWLYV+CD+C+                  LL+SGDGGD   TLPVII IVAG L+  LCLGFC    ++R HKGS TF DDSQHS    K             XXXXXXXXXXXX            A+  A  E V SP  +AA G +G +G R    DG G++             LLA+G  A SFKPNH    TP +EGIFA R GG
Sbjct:  105 ANDCASQMWILADTGAVEEAGFPYYST------------FDCATHPASVESTWLYVDCDDCAXXXXXXXXXXXXXXXXXXLLTSGDGGDSGLTLPVIIAIVAGGLILLLCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVAXXXXXXXXXXXXNGAVPLP-----AYTGAVGETVESP--MAAGGTMGESGDRGVGGDGRGNVRGXXXXXXXSGAGLLAKGSNAKSFKPNHGGANTPGYEGIFAPRGGG 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13169.2607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K704_9PHAE7.410e-4450.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHN9_ECTSI3.880e-3343.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13169contigH-canaliculatus_F_contig13169:48..1792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003820.1
Exons2
Model size1112
Cds size1110
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.411738-CDS-H-canaliculatus_F_contig13169:47..3011622929054.411738-CDS-H-canaliculatus_F_contig13169:47..301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13169 48..301 +
1696845662.209305-CDS-H-canaliculatus_F_contig13169:47..3011696845662.209305-CDS-H-canaliculatus_F_contig13169:47..301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13169 48..301 +
1622929054.4317174-CDS-H-canaliculatus_F_contig13169:934..17901622929054.4317174-CDS-H-canaliculatus_F_contig13169:934..1790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13169 935..1790 +
1696845662.2211607-CDS-H-canaliculatus_F_contig13169:934..17901696845662.2211607-CDS-H-canaliculatus_F_contig13169:934..1790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13169 935..1790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13169.2607.1prot_H-canaliculatus_F_contig13169.2607.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13169 48..1790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13169.2607.1

>prot_H-canaliculatus_F_contig13169.2607.1 ID=prot_H-canaliculatus_F_contig13169.2607.1|Name=mRNA_H-canaliculatus_F_contig13169.2607.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=370bp
PPFPEPRPRARYAVFLPLSALDAPPCRRHFNAHRFANDAGDNLVVSDHDR
IESMGRCNHGTNGRMHWSRADTAFDCATHPASVESTWLYVECDECSEVAD
VAVVCTAAVSTDDLLSSGDGGDGVFTLPVIIGIVAGALVFCLCLGFCFCQ
HRRRVHKGSRTFDDSQHSRVSHKPGGGGDGGGGGFANVAAVSVAASSVGG
GQAAGGPPPPAFIAAADEAVGSPIPLAAAGAVGRAGGRDGSGDIVLLARG
RGAGSFKPNHATPAFEGIFASRNGGGGGGGGGGDSNQGGGPGPTSATALP
HPAAVEMAKYSNPEMLRKDSMAAAAAAASAASRSQGGAGSTTVGDADMHS
RDDGFSGVLSSGVVEAGKFG
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mRNA from alignment at H-canaliculatus_F_contig13169:48..1792+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13169.2607.1 ID=mRNA_H-canaliculatus_F_contig13169.2607.1|Name=mRNA_H-canaliculatus_F_contig13169.2607.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1745bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13169:48..1792+ (Hapterophycus canaliculatus Oshoro5f female)
CCTCCTTTCCCCGAACCGCGCCCCCGCGCCCGGTACGCCGTATTTCTTCC
TCTTTCCGCGCTGGACGCACCGCCGTGTCGACGGCATTTCAACGCGCATC
GGTTCGCAAACGACGCGGGCGACAATCTCGTTGTTTCCGACCACGACCGA
ATCGAATCGATGGGACGTTGCAACCATGGAACGAATGGACGAATGCATTG
GTCGAGAGCAGACACGGCTTTCGACTGCGCGACGCATCCCGCTAGCGTGG
AAAGGTGAGGTTCGTTTTTCGTTTTTCCATGTTTTTTTTTCTCAAGTTTT
GCATATATAAACAAGATTTTTTTGTTTTCTTGCTTCGCGTGAATCGCGGA
GGCTCTCCCCGTGCCTGCTGGGCGCTGGCTCACACCTTCCCCTGATGCGA
CCGGATGCCATCCGAAGTCCTCAGCGCCGGGCCAACGGCCCTCCCTGTCC
AATGGAATCAGTTGTTGCCGGCGATTTGTTCCTCCAGGTACCGAGCAGAC
TTCTGGGGCGTGTGCCCCCCGGCTTGGCACCGCTTCACTCGTTCCGCCAG
ACTTTCAGCGTTGATCGTCATCGGCGAGGATGCCGCACCGCCGCGCACCC
CTTCTCTCGCCCGACCGGGCGTCGGGTTGATACGTTCGATCCAGATAGGC
TTCCCGGTTCCTGCCTGCGCCTTTTCACGCCCCATCTCTCCTGTGTCTCT
CGTCTCTCGTCTTTTCTAGTGGGACAGCTCGGCTACCCTCCGGGCCAGTC
TGCCGTAGGTCGGCCAGCCACTCCCGCCGAAAAAAAAACAACGACCAACG
TCCGTATCCCCCCCCCCGTCGACGTGAGCTCTCGTACAAACCCTTCCTCT
CATTATTTTCCCTCCTCCGCCTTCTGGCCTTCCTCAGCACTTGGCTGTAC
GTGGAATGCGACGAGTGCTCGGAGGTGGCCGACGTCGCTGTCGTCTGCAC
GGCGGCGGTGAGCACGGACGACTTGCTAAGCAGCGGCGACGGCGGCGACG
GCGTCTTCACCCTCCCGGTCATCATTGGCATCGTGGCGGGGGCCCTGGTC
TTCTGCCTCTGCCTCGGCTTCTGCTTCTGCCAGCACAGGAGGCGCGTCCA
CAAGGGTAGCCGCACCTTCGACGACTCGCAGCACAGCCGGGTCTCGCACA
AGCCCGGCGGCGGCGGCGACGGCGGCGGCGGGGGGTTCGCGAACGTCGCC
GCCGTCTCCGTCGCCGCCTCCAGCGTCGGCGGCGGGCAGGCCGCGGGCGG
CCCGCCGCCGCCCGCGTTCATCGCCGCCGCCGACGAAGCGGTCGGGAGCC
CGATCCCCCTGGCCGCCGCTGGCGCCGTCGGTAGGGCTGGCGGCAGGGAC
GGCTCCGGCGACATTGTCCTGCTCGCGAGAGGCCGTGGCGCAGGCAGCTT
CAAGCCGAATCACGCCACGCCAGCGTTCGAGGGCATCTTCGCGTCTCGCA
ACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACAGTAACCAGGGCGGC
GGCCCCGGCCCTACGTCGGCGACGGCGCTGCCCCACCCGGCCGCGGTCGA
GATGGCCAAGTACTCGAACCCGGAGATGCTGCGCAAGGACTCGATGGCTG
CGGCCGCGGCCGCGGCCTCTGCCGCCTCGCGCTCTCAGGGCGGCGCGGGC
AGCACCACGGTGGGAGACGCGGACATGCACTCGCGGGACGACGGCTTCTC
GGGCGTGCTCAGTAGCGGGGTGGTGGAGGCAGGAAAATTCGGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13169:48..1792+

>mRNA_H-canaliculatus_F_contig13169.2607.1 ID=mRNA_H-canaliculatus_F_contig13169.2607.1|Name=mRNA_H-canaliculatus_F_contig13169.2607.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2220bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13169:48..1792+ (Hapterophycus canaliculatus Oshoro5f female)
CCTCCTTTCCCCGAACCGCGCCCCCGCGCCCGGTACGCCGTATTTCTTCC
TCTTTCCGCGCTGGACGCACCGCCGTGTCGACGGCATTTCAACGCGCATC
GGTTCGCAAACGACGCGGGCGACAATCTCGTTGTTTCCGACCACGACCGA
ATCGAATCGATGGGACGTTGCAACCATGGAACGAATGGACGAATGCATTG
GTCGAGAGCAGACACGGCTTTCGACTGCGCGACGCATCCCGCTAGCGTGG
AAAGCCTCCTTTCCCCGAACCGCGCCCCCGCGCCCGGTACGCCGTATTTC
TTCCTCTTTCCGCGCTGGACGCACCGCCGTGTCGACGGCATTTCAACGCG
CATCGGTTCGCAAACGACGCGGGCGACAATCTCGTTGTTTCCGACCACGA
CCGAATCGAATCGATGGGACGTTGCAACCATGGAACGAATGGACGAATGC
ATTGGTCGAGAGCAGACACGGCTTTCGACTGCGCGACGCATCCCGCTAGC
GTGGAAAGCACTTGGCTGTACGTGGAATGCGACGAGTGCTCGGAGGTGGC
CGACGTCGCTGTCGTCTGCACGGCGGCGGTGAGCACGGACGACTTGCTAA
GCAGCGGCGACGGCGGCGACGGCGTCTTCACCCTCCCGGTCATCATTGGC
ATCGTGGCGGGGGCCCTGGTCTTCTGCCTCTGCCTCGGCTTCTGCTTCTG
CCAGCACAGGAGGCGCGTCCACAAGGGTAGCCGCACCTTCGACGACTCGC
AGCACAGCCGGGTCTCGCACAAGCCCGGCGGCGGCGGCGACGGCGGCGGC
GGGGGGTTCGCGAACGTCGCCGCCGTCTCCGTCGCCGCCTCCAGCGTCGG
CGGCGGGCAGGCCGCGGGCGGCCCGCCGCCGCCCGCGTTCATCGCCGCCG
CCGACGAAGCGGTCGGGAGCCCGATCCCCCTGGCCGCCGCTGGCGCCGTC
GGTAGGGCTGGCGGCAGGGACGGCTCCGGCGACATTGTCCTGCTCGCGAG
AGGCCGTGGCGCAGGCAGCTTCAAGCCGAATCACGCCACGCCAGCGTTCG
AGGGCATCTTCGCGTCTCGCAACGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGACAGTAACCAGGGCGGCGGCCCCGGCCCTACGTCGGCGACGGCGCT
GCCCCACCCGGCCGCGGTCGAGATGGCCAAGTACTCGAACCCGGAGATGC
TGCGCAAGGACTCGATGGCTGCGGCCGCGGCCGCGGCCTCTGCCGCCTCG
CGCTCTCAGGGCGGCGCGGGCAGCACCACGGTGGGAGACGCGGACATGCA
CTCGCGGGACGACGGCTTCTCGGGCGTGCTCAGTAGCGGGGTGGTGGAGG
CAGGAAAATTCGGGCACTTGGCTGTACGTGGAATGCGACGAGTGCTCGGA
GGTGGCCGACGTCGCTGTCGTCTGCACGGCGGCGGTGAGCACGGACGACT
TGCTAAGCAGCGGCGACGGCGGCGACGGCGTCTTCACCCTCCCGGTCATC
ATTGGCATCGTGGCGGGGGCCCTGGTCTTCTGCCTCTGCCTCGGCTTCTG
CTTCTGCCAGCACAGGAGGCGCGTCCACAAGGGTAGCCGCACCTTCGACG
ACTCGCAGCACAGCCGGGTCTCGCACAAGCCCGGCGGCGGCGGCGACGGC
GGCGGCGGGGGGTTCGCGAACGTCGCCGCCGTCTCCGTCGCCGCCTCCAG
CGTCGGCGGCGGGCAGGCCGCGGGCGGCCCGCCGCCGCCCGCGTTCATCG
CCGCCGCCGACGAAGCGGTCGGGAGCCCGATCCCCCTGGCCGCCGCTGGC
GCCGTCGGTAGGGCTGGCGGCAGGGACGGCTCCGGCGACATTGTCCTGCT
CGCGAGAGGCCGTGGCGCAGGCAGCTTCAAGCCGAATCACGCCACGCCAG
CGTTCGAGGGCATCTTCGCGTCTCGCAACGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGACAGTAACCAGGGCGGCGGCCCCGGCCCTACGTCGGCGAC
GGCGCTGCCCCACCCGGCCGCGGTCGAGATGGCCAAGTACTCGAACCCGG
AGATGCTGCGCAAGGACTCGATGGCTGCGGCCGCGGCCGCGGCCTCTGCC
GCCTCGCGCTCTCAGGGCGGCGCGGGCAGCACCACGGTGGGAGACGCGGA
CATGCACTCGCGGGACGACGGCTTCTCGGGCGTGCTCAGTAGCGGGGTGG
TGGAGGCAGGAAAATTCGGG
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