mRNA_H-canaliculatus_F_contig13163.2604.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13163.2604.1
Unique NamemRNA_H-canaliculatus_F_contig13163.2604.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13163.2604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13163contigH-canaliculatus_F_contig13163:2107..2942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size211
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.054925-CDS-H-canaliculatus_F_contig13163:2106..22421622929054.054925-CDS-H-canaliculatus_F_contig13163:2106..2242Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13163 2107..2242 -
1696845662.0572042-CDS-H-canaliculatus_F_contig13163:2106..22421696845662.0572042-CDS-H-canaliculatus_F_contig13163:2106..2242Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13163 2107..2242 -
1622929054.081287-CDS-H-canaliculatus_F_contig13163:2868..29421622929054.081287-CDS-H-canaliculatus_F_contig13163:2868..2942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13163 2869..2942 -
1696845662.0649934-CDS-H-canaliculatus_F_contig13163:2868..29421696845662.0649934-CDS-H-canaliculatus_F_contig13163:2868..2942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13163 2869..2942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13163.2604.1prot_H-canaliculatus_F_contig13163.2604.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13163 2107..2942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13163.2604.1

>prot_H-canaliculatus_F_contig13163.2604.1 ID=prot_H-canaliculatus_F_contig13163.2604.1|Name=mRNA_H-canaliculatus_F_contig13163.2604.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=70bp
GKLVVIQPKQARVWERPHLVRYCSSSTAAKQQLGGCTASRVSVQPQRVGK
NNVWHIPQPAVTFSPLSDQP
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mRNA from alignment at H-canaliculatus_F_contig13163:2107..2942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13163.2604.1 ID=mRNA_H-canaliculatus_F_contig13163.2604.1|Name=mRNA_H-canaliculatus_F_contig13163.2604.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=836bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13163:2107..2942- (Hapterophycus canaliculatus Oshoro5f female)
GGCAAGCTGGTTGTGATCCAGCCTAAGCAGGCACGTGTTTGGGAGCGCCC
CCATCTCGTTAGGTACTGCTCAAGGCAGGAGCACTGCGGCCAAACAACAA
CTCGGAGGATGTACAGCTTCCAGAGTATCGGTCCAGCCACAACGTGTCGG
CAAGAAGAATGTGTGGCACATTTCACAACCAGTTGTGACGTGTTCGTCGA
TGTCGGACTTGCCGCTCGCAGGTTCCATCCCGGGGGACCTAGGGGCTCTC
AGCGACCTGCAGGAGCTGGATGTCAGCAACAACCAGCTGACAGGTACACC
TAATGTAGGGAGGACGTCGGCACAAACCTCTTGCCGGCTCCTGCATGAGT
CCTGCCGTGTCGTAGGCGAGACACATACATATTCGCAAGCATGTGTGGCC
GGTCGCATGCCCTTTGACCGGCCAGATTGATGTCATACAGCCGAAGCCTC
TTGATCTTGGTCAAAGCTGCTGGTGTCTCGGGAATGGTTCCTGCGCAGGC
GGCAAAAAACAGTACGAGGCATACGGTCTGGGACTTCGGCAAAAGCTCCC
ACAACTCAACCGCGTGACCCACGTCTGTTGGAGACGTTCTTGGTGTGTAA
TCGTGCTCTTTCGACCGGCAAGCTGGTTGTGATCTAGCCGAAGCAGGCAC
GTGTTTGGGAGCGCCCTTATCTCGTTGGGTATGGATCCCGCTCAAGGCAG
CAGCACTGCGGCAAAACAACAACTCGGAGGATGTACAGCTTCCAGAGTAT
CGGTCCAGCCACAACGTGTTGGCAAGAATAATGTGTGGCACATTCCACAA
CCAGCTGTAACCTTTTCGCCTTTGTCGGACCAACCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13163:2107..2942-

>mRNA_H-canaliculatus_F_contig13163.2604.1 ID=mRNA_H-canaliculatus_F_contig13163.2604.1|Name=mRNA_H-canaliculatus_F_contig13163.2604.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13163:2107..2942- (Hapterophycus canaliculatus Oshoro5f female)
GGCAAGCTGGTTGTGATCCAGCCTAAGCAGGCACGTGTTTGGGAGCGCCC
CCATCTCGTTAGGTACTGCTCAAGGGCAAGCTGGTTGTGATCCAGCCTAA
GCAGGCACGTGTTTGGGAGCGCCCCCATCTCGTTAGGTACTGCTCAAGCA
GCACTGCGGCAAAACAACAACTCGGAGGATGTACAGCTTCCAGAGTATCG
GTCCAGCCACAACGTGTTGGCAAGAATAATGTGTGGCACATTCCACAACC
AGCTGTAACCTTTTCGCCTTTGTCGGACCAACCGCAGCACTGCGGCAAAA
CAACAACTCGGAGGATGTACAGCTTCCAGAGTATCGGTCCAGCCACAACG
TGTTGGCAAGAATAATGTGTGGCACATTCCACAACCAGCTGTAACCTTTT
CGCCTTTGTCGGACCAACCG
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