mRNA_H-canaliculatus_F_contig13041.2519.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13041.2519.1
Unique NamemRNA_H-canaliculatus_F_contig13041.2519.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13041.2519.1 vs. uniprot
Match: A0A6H5KMF3_9PHAE (Hist_deacetyl domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMF3_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 2.290e-64
Identity = 101/119 (84.87%), Postives = 110/119 (92.44%), Query Frame = 1
Query:    1 RTERICAKIPDTAGSLSHLDGDTAISHNSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGPRGLVTCGNDAQGSHGFCLLNNVAIGAAYARCMHRHTGVDRVAIVDFDVHHG 357
            + ER+C+ IP+  GSL+HLDGDTA+SHNSFEAA+RAAGSVCD VDRVMTGRNRNAFCAVRPPGHHAG RGLVTC ND  GSHGFCLLNNVAIGAAYARC+HRHTGV+RVAIVDFDVHHG
Sbjct:  628 KLERLCSSIPEGPGSLAHLDGDTAVSHNSFEAALRAAGSVCDGVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCANDGTGSHGFCLLNNVAIGAAYARCVHRHTGVERVAIVDFDVHHG 746          
BLAST of mRNA_H-canaliculatus_F_contig13041.2519.1 vs. uniprot
Match: A0A7S4IZS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IZS9_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.420e-52
Identity = 85/119 (71.43%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    1 RTERICAKIPDTAGSLSHLDGDTAISHNSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGPRGLVTCGNDAQGSHGFCLLNNVAIGAAYARCMHRHTGVDRVAIVDFDVHHG 357
            R  ++C+ +PD   +++ LD DTA+S  SFEAAMRAAG VC+AVDRVM+G  RNAFCAVRPPGHHAGPRG+VTC ND  GSHGFCLLNNVAIGA+YAR M+R+ GV RVAI+DFDVHHG
Sbjct:  148 RISQLCSSLPDHPKAIASLDADTAVSRWSFEAAMRAAGGVCEAVDRVMSGDYRNAFCAVRPPGHHAGPRGVVTCPNDPDGSHGFCLLNNVAIGASYARSMYRNEGVKRVAIIDFDVHHG 266          
BLAST of mRNA_H-canaliculatus_F_contig13041.2519.1 vs. uniprot
Match: B8C1J3_THAPS (Histone deacetylase 1 HDAC Hda1p n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1J3_THAPS)

HSP 1 Score: 182 bits (463), Expect = 3.540e-52
Identity = 84/119 (70.59%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    1 RTERICAKIPDTAGSLSHLDGDTAISHNSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGPRGLVTCGNDAQGSHGFCLLNNVAIGAAYARCMHRHTGVDRVAIVDFDVHHG 357
            +T ++CA IPD   ++  LD DT +S  SFEAA+RAAGSVC+AVD+VM+G  RNAFCAVRPPGHHAGPRG+VTC ND  GSHGFCLLNNVAIGAAYAR M+R+ G+ +VAI+DFDVHHG
Sbjct:  299 KTSQLCASIPDHPNAIQTLDADTTVSRWSFEAALRAAGSVCEAVDKVMSGDFRNAFCAVRPPGHHAGPRGIVTCPNDPDGSHGFCLLNNVAIGAAYARSMYRNDGIKKVAIIDFDVHHG 417          
BLAST of mRNA_H-canaliculatus_F_contig13041.2519.1 vs. uniprot
Match: A0A7S3Q0M5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0M5_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.210e-51
Identity = 83/116 (71.55%), Postives = 101/116 (87.07%), Query Frame = 1
Query:   10 RICAKIPDTAGSLSHLDGDTAISHNSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGPRGLVTCGNDAQGSHGFCLLNNVAIGAAYARCMHRHTGVDRVAIVDFDVHHG 357
            +IC++IPD   +++HLD DT +S  SFE+AMRA+GSVC+AVDR+M G  RNAFCAVRPPGHHAGPRG+V C ND +GSHGFCLLNNVAIGAAYARCM+R+ G+ +VAI+DFDVHHG
Sbjct:  636 QICSEIPDHPNAIAHLDTDTGMSRWSFESAMRASGSVCEAVDRIMAGDFRNAFCAVRPPGHHAGPRGIVKCENDPEGSHGFCLLNNVAIGAAYARCMYRNDGIKKVAIIDFDVHHG 751          
BLAST of mRNA_H-canaliculatus_F_contig13041.2519.1 vs. uniprot
Match: A0A7S2UJ04_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ04_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.110e-51
Identity = 84/119 (70.59%), Postives = 101/119 (84.87%), Query Frame = 1
Query:    1 RTERICAKIPDTAGSLSHLDGDTAISHNSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGPRGLVTCGNDAQGSHGFCLLNNVAIGAAYARCMHRHTGVDRVAIVDFDVHHG 357
            R    CA+IPD   +++ LDGDTA+S  SFEAA+RAAGSVC+AVD+VM+G  RN+FCAVRPPGHHAGPRG+V C ND +GSHGFCLLNNVAIGAAYAR M+R+ G+ +VAI+DFDVHHG
Sbjct:  654 RISHACAQIPDHPSAIAQLDGDTAVSRWSFEAALRAAGSVCEAVDKVMSGDFRNSFCAVRPPGHHAGPRGIVKCANDPEGSHGFCLLNNVAIGAAYARTMYRNDGIRKVAIIDFDVHHG 772          
BLAST of mRNA_H-canaliculatus_F_contig13041.2519.1 vs. uniprot
Match: A0A8J9SU04_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SU04_PHATR)

HSP 1 Score: 169 bits (427), Expect = 3.800e-51
Identity = 81/102 (79.41%), Postives = 89/102 (87.25%), Query Frame = 1
Query:   55 LDGDTAISHNSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGPRGLVTCGNDAQG-SHGFCLLNNVAIGAAYARCMHRHTGVDRVAIVDFDVHHG 357
            LD DTAISH +FEAAMRAAGSVC AVD+V+ G NRNAFCAVRPPGHHAGP G+V C ND +G SHGFCLLNNVAIGAAYAR M+RH G+ +VAIVDFDVHHG
Sbjct:    1 LDPDTAISHWTFEAAMRAAGSVCQAVDQVIAGENRNAFCAVRPPGHHAGPTGIVKCANDPEGGSHGFCLLNNVAIGAAYARSMYRHEGIQKVAIVDFDVHHG 102          
BLAST of mRNA_H-canaliculatus_F_contig13041.2519.1 vs. uniprot
Match: A0A7S2QZ77_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZ77_9STRA)

HSP 1 Score: 181 bits (458), Expect = 7.420e-51
Identity = 83/119 (69.75%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    1 RTERICAKIPDTAGSLSHLDGDTAISHNSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGPRGLVTCGNDAQGSHGFCLLNNVAIGAAYARCMHRHTGVDRVAIVDFDVHHG 357
            +  +IC+++PD   +++ LD DTAIS  SFE A+RA+GSVCDAVDRVM G  RNAFCAVRPPGHHAGPRG+V C ND +GSHGFCLLNNVAIGAAYAR M+R+ G+ +VAI+DFDVHHG
Sbjct:  282 KISQICSELPDHPNAIATLDADTAISRWSFEGALRASGSVCDAVDRVMAGDFRNAFCAVRPPGHHAGPRGIVKCANDPEGSHGFCLLNNVAIGAAYARSMYRNDGIKKVAIIDFDVHHG 400          
BLAST of mRNA_H-canaliculatus_F_contig13041.2519.1 vs. uniprot
Match: A0A1Z5J6P1_FISSO (Hist_deacetyl domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6P1_FISSO)

HSP 1 Score: 181 bits (459), Expect = 1.300e-50
Identity = 87/117 (74.36%), Postives = 100/117 (85.47%), Query Frame = 1
Query:   10 RICAKIPDTAGSLSHLDGDTAISHNSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGPRGLVTCGNDAQG-SHGFCLLNNVAIGAAYARCMHRHTGVDRVAIVDFDVHHG 357
            R+ + IPD   +++HLDGDTAIS  SFEAAMRAAGSVC+AVD+V+ G  RNAFCAVRPPGHHAGPRG+V C ND +G SHGFCLLNNVAIGAAYAR M+R+ G+ RVAIVDFDVHHG
Sbjct:  540 RLASSIPDHPNAIAHLDGDTAISRWSFEAAMRAAGSVCEAVDKVIAGDLRNAFCAVRPPGHHAGPRGIVKCANDPEGGSHGFCLLNNVAIGAAYARSMYRNEGIQRVAIVDFDVHHG 656          
BLAST of mRNA_H-canaliculatus_F_contig13041.2519.1 vs. uniprot
Match: A0A7S2LK53_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LK53_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.310e-50
Identity = 81/119 (68.07%), Postives = 99/119 (83.19%), Query Frame = 1
Query:    1 RTERICAKIPDTAGSLSHLDGDTAISHNSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGPRGLVTCGNDAQGSHGFCLLNNVAIGAAYARCMHRHTGVDRVAIVDFDVHHG 357
            +T ++C+  PD   ++  LD DT +SH SFEAA+RAAGSVC+AVD+VM G  RNAFCA+RPPGHHAGPRG+VTC ND  GSHGFCLLNN+AIGAAYAR M+R+ G+ +VAI+DFDVHHG
Sbjct:  518 KTSKLCSATPDHPKAIQTLDADTTVSHWSFEAALRAAGSVCEAVDKVMAGDYRNAFCAIRPPGHHAGPRGIVTCPNDPDGSHGFCLLNNIAIGAAYARSMYRNDGIKKVAIIDFDVHHG 636          
BLAST of mRNA_H-canaliculatus_F_contig13041.2519.1 vs. uniprot
Match: A0A1E7FPA2_9STRA (Arginase/deacetylase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FPA2_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.510e-48
Identity = 77/116 (66.38%), Postives = 95/116 (81.90%), Query Frame = 1
Query:   13 ICAKIPDTAGSLSHLDGDTAISHNSFEAAMRAAGSVCDAVDRVMTGRNRNAFCAVRPPGHHAGPRGLVTCGNDAQG-SHGFCLLNNVAIGAAYARCMHRHTGVDRVAIVDFDVHHG 357
            +C+ IPD   ++++LD DT +S  SFE+A+RA GSVC+AVD+V+ G NRNAFC VRPPGHHAGPRG+V C ND  G SHGFC LNNVAIGAAYAR M+R+ G+ ++AIVDFDVHHG
Sbjct:    1 MCSSIPDHPSAVANLDADTTMSRWSFESALRACGSVCEAVDKVIAGDNRNAFCVVRPPGHHAGPRGIVRCDNDPDGGSHGFCFLNNVAIGAAYARSMYRNEGIQKIAIVDFDVHHG 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13041.2519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMF3_9PHAE2.290e-6484.87Hist_deacetyl domain-containing protein n=2 Tax=Ec... [more]
A0A7S4IZS9_9STRA2.420e-5271.43Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
B8C1J3_THAPS3.540e-5270.59Histone deacetylase 1 HDAC Hda1p n=1 Tax=Thalassio... [more]
A0A7S3Q0M5_9STRA1.210e-5171.55Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S2UJ04_9STRA3.110e-5170.59Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A8J9SU04_PHATR3.800e-5179.41Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A7S2QZ77_9STRA7.420e-5169.75Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Z5J6P1_FISSO1.300e-5074.36Hist_deacetyl domain-containing protein n=2 Tax=Fi... [more]
A0A7S2LK53_9STRA1.310e-5068.07Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1E7FPA2_9STRA2.510e-4866.38Arginase/deacetylase n=1 Tax=Fragilariopsis cylind... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13041contigH-canaliculatus_F_contig13041:365..990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue1.1e-46
Seed eggNOG ortholog2880.D8LR52
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.3910162-CDS-H-canaliculatus_F_contig13041:364..6341622929039.3910162-CDS-H-canaliculatus_F_contig13041:364..634Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13041 365..634 +
1696845657.2081487-CDS-H-canaliculatus_F_contig13041:364..6341696845657.2081487-CDS-H-canaliculatus_F_contig13041:364..634Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13041 365..634 +
1622929039.4647963-CDS-H-canaliculatus_F_contig13041:903..9901622929039.4647963-CDS-H-canaliculatus_F_contig13041:903..990Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13041 904..990 +
1696845657.2199233-CDS-H-canaliculatus_F_contig13041:903..9901696845657.2199233-CDS-H-canaliculatus_F_contig13041:903..990Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13041 904..990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13041.2519.1prot_H-canaliculatus_F_contig13041.2519.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13041 365..990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13041.2519.1

>prot_H-canaliculatus_F_contig13041.2519.1 ID=prot_H-canaliculatus_F_contig13041.2519.1|Name=mRNA_H-canaliculatus_F_contig13041.2519.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=119bp
RTERICAKIPDTAGSLSHLDGDTAISHNSFEAAMRAAGSVCDAVDRVMTG
RNRNAFCAVRPPGHHAGPRGLVTCGNDAQGSHGFCLLNNVAIGAAYARCM
HRHTGVDRVAIVDFDVHHG
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mRNA from alignment at H-canaliculatus_F_contig13041:365..990+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13041.2519.1 ID=mRNA_H-canaliculatus_F_contig13041.2519.1|Name=mRNA_H-canaliculatus_F_contig13041.2519.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=626bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13041:365..990+ (Hapterophycus canaliculatus Oshoro5f female)
CGAACAGAACGGATCTGTGCCAAGATCCCGGACACGGCCGGCTCTCTGTC CCACCTAGACGGGGACACCGCCATCTCGCACAACTCCTTCGAGGCGGCCA TGCGCGCGGCCGGGTCGGTGTGCGACGCGGTGGACAGGGTGATGACGGGC AGGAACCGGAACGCTTTCTGCGCCGTGAGACCCCCCGGGCACCACGCCGG CCCCCGCGGGCTCGTGACGTGCGGTAACGACGCCCAGGGCTCCCATGGGT TCTGCCTCCTCAACAACGTGGTGAGTGAGCAGTAAGGGTGTACTGACAGC GGAGCGGGCTGGCAGGCGGGCGGGCGGGAAGCCTGGGTGGGGGGGAGTGG GGGTGGCGCGGGTGGTCCTGGGTCGTCGGATAAGACGTACGGCGTGATGC GCGTAGCTGTGTTTTGGTTTGCGCAACACGCGCGCGCGCGTGTGTGTGTG TGCCAAACCACCTGGACCCCCCCCACTTCCCCCCCCGAATTGTCCTTTTG CTCTGTGTGTGTGATTTTTATTTATTTTTCACCTTGTAGGCGATCGGAGC GGCGTACGCAAGGTGCATGCACCGGCACACCGGCGTCGACCGAGTCGCCA TCGTTGACTTCGACGTCCACCACGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13041:365..990+

>mRNA_H-canaliculatus_F_contig13041.2519.1 ID=mRNA_H-canaliculatus_F_contig13041.2519.1|Name=mRNA_H-canaliculatus_F_contig13041.2519.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13041:365..990+ (Hapterophycus canaliculatus Oshoro5f female)
CGAACAGAACGGATCTGTGCCAAGATCCCGGACACGGCCGGCTCTCTGTC
CCACCTAGACGGGGACACCGCCATCTCGCACAACTCCTTCGAGGCGGCCA
TGCGCGCGGCCGGGTCGGTGTGCGACGCGGTGGACAGGGTGATGACGGGC
AGGAACCGGAACGCTTTCTGCGCCGTGAGACCCCCCGGGCACCACGCCGG
CCCCCGCGGGCTCGTGACGTGCGGTAACGACGCCCAGGGCTCCCATGGGT
TCTGCCTCCTCAACAACGTGCGAACAGAACGGATCTGTGCCAAGATCCCG
GACACGGCCGGCTCTCTGTCCCACCTAGACGGGGACACCGCCATCTCGCA
CAACTCCTTCGAGGCGGCCATGCGCGCGGCCGGGTCGGTGTGCGACGCGG
TGGACAGGGTGATGACGGGCAGGAACCGGAACGCTTTCTGCGCCGTGAGA
CCCCCCGGGCACCACGCCGGCCCCCGCGGGCTCGTGACGTGCGGTAACGA
CGCCCAGGGCTCCCATGGGTTCTGCCTCCTCAACAACGTGGCGATCGGAG
CGGCGTACGCAAGGTGCATGCACCGGCACACCGGCGTCGACCGAGTCGCC
ATCGTTGACTTCGACGTCCACCACGGTGCGATCGGAGCGGCGTACGCAAG
GTGCATGCACCGGCACACCGGCGTCGACCGAGTCGCCATCGTTGACTTCG
ACGTCCACCACGGT
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