mRNA_H-canaliculatus_F_contig10230.248.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10230.248.1
Unique NamemRNA_H-canaliculatus_F_contig10230.248.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10230.248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10230contigH-canaliculatus_F_contig10230:1476..1980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPectin lyase fold protein
Ec32 orthologEc-11_001655.1
Exons1
Model size506
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928651.965558-CDS-H-canaliculatus_F_contig10230:1475..19791622928651.965558-CDS-H-canaliculatus_F_contig10230:1475..1979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10230 1476..1979 +
1696845514.531487-CDS-H-canaliculatus_F_contig10230:1475..19791696845514.531487-CDS-H-canaliculatus_F_contig10230:1475..1979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10230 1476..1979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10230.248.1prot_H-canaliculatus_F_contig10230.248.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10230 1476..1979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10230.248.1

>prot_H-canaliculatus_F_contig10230.248.1 ID=prot_H-canaliculatus_F_contig10230.248.1|Name=mRNA_H-canaliculatus_F_contig10230.248.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=168bp
ATGSRPLAAAPTAGSQQRLQHHPFTQGQAAAVLGQPARQGVVAAAVTAAA
AAAALGNRAVSSAAQSARQQSWTPSPSVAPTSTRAVTPRSAAAPTSTSGW
ADIGGRSVAGGASSGGPPSRSNGAASAGPVSSGAASSAAGAHSAAGSGGT
GRLHARSGSIEGASGGIA
back to top

mRNA from alignment at H-canaliculatus_F_contig10230:1476..1980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10230.248.1 ID=mRNA_H-canaliculatus_F_contig10230.248.1|Name=mRNA_H-canaliculatus_F_contig10230.248.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=505bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10230:1476..1980+ (Hapterophycus canaliculatus Oshoro5f female)
GCTACGGGAAGCCGACCGTTAGCTGCCGCTCCGACAGCGGGGAGTCAGCA
ACGGCTGCAGCATCACCCGTTCACCCAAGGCCAGGCTGCCGCGGTTCTCG
GACAGCCGGCGAGGCAGGGGGTAGTGGCGGCGGCAGTGACGGCGGCAGCG
GCGGCGGCGGCGCTCGGGAATAGGGCTGTCTCCTCTGCCGCACAGAGTGC
CCGCCAGCAGTCGTGGACGCCCTCGCCTTCCGTCGCACCGACGTCGACGA
GGGCGGTCACACCACGAAGCGCTGCGGCGCCGACGTCGACGTCGGGCTGG
GCAGACATCGGCGGCAGGAGCGTCGCGGGTGGGGCTAGCAGCGGCGGCCC
GCCGTCGCGATCGAACGGGGCGGCGAGCGCGGGGCCCGTCTCTTCGGGCG
CGGCTTCTTCCGCCGCCGGCGCTCATAGCGCTGCCGGTAGCGGCGGCACG
GGACGCCTGCACGCACGCAGCGGCAGCATCGAAGGGGCATCGGGGGGCAT
CGCCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10230:1476..1980+

>mRNA_H-canaliculatus_F_contig10230.248.1 ID=mRNA_H-canaliculatus_F_contig10230.248.1|Name=mRNA_H-canaliculatus_F_contig10230.248.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1008bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10230:1476..1980+ (Hapterophycus canaliculatus Oshoro5f female)
GCTACGGGAAGCCGACCGTTAGCTGCCGCTCCGACAGCGGGGAGTCAGCA
ACGGCTGCAGCATCACCCGTTCACCCAAGGCCAGGCTGCCGCGGTTCTCG
GACAGCCGGCGAGGCAGGGGGTAGTGGCGGCGGCAGTGACGGCGGCAGCG
GCGGCGGCGGCGCTCGGGAATAGGGCTGTCTCCTCTGCCGCACAGAGTGC
CCGCCAGCAGTCGTGGACGCCCTCGCCTTCCGTCGCACCGACGTCGACGA
GGGCGGTCACACCACGAAGCGCTGCGGCGCCGACGTCGACGTCGGGCTGG
GCAGACATCGGCGGCAGGAGCGTCGCGGGTGGGGCTAGCAGCGGCGGCCC
GCCGTCGCGATCGAACGGGGCGGCGAGCGCGGGGCCCGTCTCTTCGGGCG
CGGCTTCTTCCGCCGCCGGCGCTCATAGCGCTGCCGGTAGCGGCGGCACG
GGACGCCTGCACGCACGCAGCGGCAGCATCGAAGGGGCATCGGGGGGCAT
CGCCGCTACGGGAAGCCGACCGTTAGCTGCCGCTCCGACAGCGGGGAGTC
AGCAACGGCTGCAGCATCACCCGTTCACCCAAGGCCAGGCTGCCGCGGTT
CTCGGACAGCCGGCGAGGCAGGGGGTAGTGGCGGCGGCAGTGACGGCGGC
AGCGGCGGCGGCGGCGCTCGGGAATAGGGCTGTCTCCTCTGCCGCACAGA
GTGCCCGCCAGCAGTCGTGGACGCCCTCGCCTTCCGTCGCACCGACGTCG
ACGAGGGCGGTCACACCACGAAGCGCTGCGGCGCCGACGTCGACGTCGGG
CTGGGCAGACATCGGCGGCAGGAGCGTCGCGGGTGGGGCTAGCAGCGGCG
GCCCGCCGTCGCGATCGAACGGGGCGGCGAGCGCGGGGCCCGTCTCTTCG
GGCGCGGCTTCTTCCGCCGCCGGCGCTCATAGCGCTGCCGGTAGCGGCGG
CACGGGACGCCTGCACGCACGCAGCGGCAGCATCGAAGGGGCATCGGGGG
GCATCGCC
back to top