mRNA_H-canaliculatus_F_contig13.2484.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13.2484.1 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI) HSP 1 Score: 538 bits (1387), Expect = 1.480e-175 Identity = 327/590 (55.42%), Postives = 382/590 (64.75%), Query Frame = 3
Query: 570 RKWMAAAVSVVQLIFIPALSTSSDVFGRKALICFALGLHAMCVFTLATKVRSMAWSTACRLVTSLGSVVSPVSQAIMIDLSPEGGKAATYGLGIAFGVFALGNSAGDIVGGLLSEHHRGVACLVSGALATAGLLPVVIFGWKETAPSFAEGGRRQRSWCCWLPWWRMKKPGDEEGGGLERGDAGVVVTDLGGGNMAGHGLNVVTENVASAGGTAGDNSGGITATVDEDGVILEDGRP-TGRRGTATRGDMYKFNSFSVLNVFLESRILLRIAFSYFAFILSLNVFATGYNYVDYRFHWTPPEISYFFATYNILMAIAGGWVIRFIVPARLSEENGGLFGIFVQACATTVSGLCFRGWMLYPALAFGALQNITEPCLQAVMAPFVGADKQGSLQGAVMSLRVVGEGVAAAVFTQVFSAGTSAGFEQAPFFLATLISLIGLAVAWSPLRKLDKQKKKAFEDHMAAP---------PVAAPAAGDRLECAAEKGCSAIGDATAVSRTTPAPARG----QGNEGQTCCENDPDRDVLPRGGTAQVLTESGDVAVMPEVGLSERGGDKPDKWKEGVNGEDAGEEELRRPLLQHSP 2297
R W+AA VSV+QLIF+PA+S SDV GRKA++CFA LHA V LA S+AW+T CRL TS+ V+ PVSQAIMIDLSP+ GK AT+GLGIAFG ALG SAGDI+GG L+EHHRG ACLVS A + A LL + +FGW+ETAP G W WL WWR+++ ER D VV + + G + +VA+ G ++ TA+VD V +DG+ G RG A R + N SVL VFLESR LLRIA SYF F+LSLNVFATGYNYVDYRF WTP EISYFFATYNILMA+AGGWVIRFIVP RL+EE G LFGI VQ + VSGLCFRGWMLYPAL FGALQNITEPCLQA+MA FVG + QGSLQGAVMSLRVVGEGVAA VFTQVFSAG S GFE+APFFLAT ISL+ LAVAW PLRKLDK K DH A+P P APAAGD ++ AAE G A G A + + A A G + Q C + D +L R + S D V G E + ++G++G AG +E LL P
Sbjct: 113 RGWLAAGVSVIQLIFVPAISGWSDVVGRKAVVCFAQVLHAGSVLALAAMADSLAWATVCRLATSVCIVILPVSQAIMIDLSPDRGKGATHGLGIAFGASALGFSAGDIIGGSLTEHHRGAACLVSAAFSAASLLSLALFGWRETAPPLVGEG-----WQRWL-WWRVEEQ--------ERIDDAVV--GMNDDDDVGANRGICGRDVAAV--VQGGDAVEATASVDSF-VWDDDGKQGAGGRGRARRSGRKQLNPLSVLKVFLESRALLRIACSYFLFVLSLNVFATGYNYVDYRFGWTPSEISYFFATYNILMALAGGWVIRFIVPKRLTEEKGALFGISVQVFSVMVSGLCFRGWMLYPALVFGALQNITEPCLQAIMATFVGPELQGSLQGAVMSLRVVGEGVAAPVFTQVFSAGASVGFEEAPFFLATAISLVSLAVAWWPLRKLDKTKNIVLPDHDASPRGWEPPTPAPTRAPAAGDEVQHAAEGGVLATGGAADDNNVSTANAGGLVKAAEDNPQNCADVVSDLSLLARSRAPLLAINSDDRVVDVSPGDDELPEREEQDEEQGIDG--AGVDEGMGQLLLAVP 681
BLAST of mRNA_H-canaliculatus_F_contig13.2484.1 vs. uniprot
Match: A0A6H5L7V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V6_9PHAE) HSP 1 Score: 221 bits (563), Expect = 6.440e-61 Identity = 138/273 (50.55%), Postives = 168/273 (61.54%), Query Frame = 3
Query: 570 RKWMAAAVSVVQLIFIPALSTSSDVFGRKALICFALGLHAMCVFTLATKVRSMAWSTACRLVTSLGSVVSPVSQAIMIDLSPEGGKAATYGLGIAFGVFALGNSAGDIVGGLLSEHHRGVACLVSGALATAGLLPVVIFGWKETAPSFAEGGRRQRSWCCWLPWWRMKKPGDEEGGGLERGDAGVVVTDLG--GGNMAGHGLNVVTENVASAGGTAGDNSGGITATVDEDGVILEDGRPTGR--RGTATRGDMYKFNSFSVLNVFLESRILLR 1376
R W+AA VSV+QL+F+PA+S SSDV GRK ++CFA LHA V LA S+ W+T CRL TS+ V+ PVSQAIMIDLSP+ GK AT+GLGIAFG ALG SAGDI+GG L+EHHRG ACLVS A ATA LL +++FGW+ETAP G W WL WWRM EE ++ G+ D+G GGN G + V + GD G TA+VD + +D R G RG A R + N SVL VFLE+R LR
Sbjct: 73 RGWLAAGVSVIQLLFVPAISGSSDVVGRKVVVCFAQVLHASSVLALAAMADSLVWATVCRLATSVCIVILPVSQAIMIDLSPDRGKGATHGLGIAFGACALGFSAGDIIGGSLAEHHRGAACLVSAAFATASLLSLMLFGWRETAPPLVGEG-----WQRWL-WWRM-----EEQERVDDAVVGINEDDVGANGGN-GGRDIVAVVQ--------GGDAVGASTASVDS--FVWDDDRRKGAGCRGRARRSGREQLNPLSVLKVFLETRRTLR 323
BLAST of mRNA_H-canaliculatus_F_contig13.2484.1 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI) HSP 1 Score: 189 bits (481), Expect = 2.130e-47 Identity = 101/203 (49.75%), Postives = 131/203 (64.53%), Query Frame = 3
Query: 1326 NSFSVLNVFLESRILLRIAFSYFAFILSLNVFATGYNYVDYRFHWTPPEISYFFATYNILMAIAGGWVIRFIVPARLSEENGGLFGIFVQACATTVSGLCFRGWMLYPALAFGALQNITEPCLQAVMAPFVGADKQGSLQGAVMSLRVVGEGVAAAVFTQVFSAGTSAGFEQA--------PFFLATLISLIGLAVAWSPLRK 1910
N FSVL VFLES +L+++A F LSLNVF+ YNY D+R+HW+P +IS FF+T+ IL+A+ G +IRF+VP RLS G L G+ +Q+ +TT+ GL +GWM Y L LQ ITEPC+Q VMA VGAD+QGSLQGAV LR V +G+A ++ Q+FS G S E A P F A+ L +AW LRK
Sbjct: 272 NPFSVLKVFLESSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISLFFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSTRVENALGFVLPGLPLFCASGCGATALTIAWYALRK 474
BLAST of mRNA_H-canaliculatus_F_contig13.2484.1 vs. uniprot
Match: UPI001939D292 (TCR/Tet family MFS transporter n=1 Tax=Maricaulis parjimensis TaxID=144023 RepID=UPI001939D292) HSP 1 Score: 89.0 bits (219), Expect = 9.190e-15 Identity = 65/217 (29.95%), Postives = 105/217 (48.39%), Query Frame = 3
Query: 1257 VILEDGRPTGRRGTATRGDMYKFNSFSVLNVFLESRILLRIAFSYFAFILSLNVFATGYNYV-DYRFHWTPPEISYFFATYNILMAIAGGWVIRFIVPARLSEENGGLFGIFVQACATTVSGLCFRGWMLYPALAFGALQNITEPCLQAVMAPFVGADKQGSLQGAVMSLR----VVGEGVAAAVFTQVFSAGTSAGFEQAPFFLATLISLIGLAVA 1892
V+ E +P RR + D+ + N F L + +L + S F +L V+ + Y +++F W E I A+ G + R +VP +L E + + + GL GWM+Y +AFGAL I +P LQ VM+ V + QG LQGA+ +L+ ++G + VF G++ F APF +A++++LI LA+A
Sbjct: 187 VLPESLKPENRR----KFDIRRANPFGSLWHMRKHPAVLIMMGSVFLMLLGHAVYPAIWTYYSEFKFGWDAAERGLSLMAVGISSAVVQGGLTRILVP-KLGEWRAITLSLILGSIGYLGFGLATEGWMVYAVIAFGALGGIGQPALQGVMSRIVPPNAQGELQGAMTALQSLSMIIGPLTMSRVFAHFSEEGSAVTFAGAPFAMASILTLIALAIA 398
BLAST of mRNA_H-canaliculatus_F_contig13.2484.1 vs. uniprot
Match: A0A399EQQ3_9DEIN (Tetracycline resistance protein, class C n=2 Tax=Deinococcus-Thermus TaxID=1297 RepID=A0A399EQQ3_9DEIN) HSP 1 Score: 84.7 bits (208), Expect = 1.790e-13 Identity = 59/201 (29.35%), Postives = 98/201 (48.76%), Query Frame = 3
Query: 1326 NSFSVLNVFLESRILLRIAFSYFAFILSLNVF-ATGYNYVDYRFHWTPPEISYFFATYNILMAIAGGWVIRFIVPARLSEENGGLFGIFVQACATTVSGLCFRGWMLYPALAFGALQNITEPCLQAVMAPFVGADKQGSLQGAVMSLR----VVGEGVAAAVFTQVFSAGTSAGFEQAPFFLATLISLIGLAVAWSPLRKL 1913
N F L +L + ++ L++N+ A Y YR+ + P E + A + ++ A+ G V+ ++V +RL E G+ V A + + GL W+L+ ALA GAL + EP LQA+++ + ++QGS+QGA+ ++ VVG + + A APFF L +GL +A LR+L
Sbjct: 201 NPFGALTALARYPLLRPLGWTILLSSLAMNMLVAVWIPYGTYRYGFGPTENGFILAAFGLMSALGQGLVVPWLV-SRLGEHRAIPLGLGVSALSLLLYGLASTPWLLFAALAIGALGAVDEPALQALISRHIRPNEQGSVQGALATIGNLMGVVGPVAGTHLLSSFSGPQAVAELPGAPFFAGALCVALGLGIAHRTLRRL 400
BLAST of mRNA_H-canaliculatus_F_contig13.2484.1 vs. uniprot
Match: A0A522Z5B0_9BACT (MFS transporter n=1 Tax=bacterium TaxID=1869227 RepID=A0A522Z5B0_9BACT) HSP 1 Score: 84.3 bits (207), Expect = 2.400e-13 Identity = 47/156 (30.13%), Postives = 82/156 (52.56%), Query Frame = 3
Query: 1437 YVDYRFHWTPPEISYFFATYNILMAIAGGWVIRFIVPARLSEENGGLFGIFVQACATTVSGLCFRGWMLYPALAFGALQNITEPCLQAVMAPFVGADKQGSLQGAVMSLRVVGEGVAAAVFTQVFSAGTSAGFEQAPFFLATLISLIGLAVAWSPL 1904
Y + +F WTP ++ + + +A+A G + R IVP +L FG+ A + + + +RGWM+YP +A +L +T P LQ+++A V ++QG LQG+++S+ + +A +FT++F T G AP + L + W L
Sbjct: 241 YTETKFGWTPWQVGLSLSFVGVSIAVAQGGLTRLIVP-KLGAARSLTFGLAAYAVSFALFAVVWRGWMMYPVVALFSLSGVTMPSLQSLLARHVPPERQGELQGSLVSMGALASILAPLLFTRLFVHFTRPG---APVYFPGAAYLGASVICWGTL 392
BLAST of mRNA_H-canaliculatus_F_contig13.2484.1 vs. uniprot
Match: UPI000E6B09B3 (TCR/Tet family MFS transporter n=1 Tax=Lysobacter tabacisoli TaxID=2315424 RepID=UPI000E6B09B3) HSP 1 Score: 82.4 bits (202), Expect = 1.180e-12 Identity = 50/157 (31.85%), Postives = 71/157 (45.22%), Query Frame = 3
Query: 1437 YVDYRFHWTPPEISYFFATYNILMAIAGGWVIRFIVPARLSEENGGLFGIFVQACATTVSGLCFRGWMLYPALAFGALQNITEPCLQAVMAPFVGADKQGSLQGAVMSL----RVVGEGVAAAVFTQVFSAGTSAGFEQAPFFLATLISLIGLAVAW 1895
+ DYR+ W P E+SY A + I ++ +V A L E LFG+ + L RGWM Y L AL + P QA++ VGAD QG +QGA+MSL + G + A F APFF+A+ + + + W
Sbjct: 256 FADYRYGWGPGEVSYVLALVGVFSVIVNALLVGRVVKA-LGERRTLLFGLGCGVVGFFIYALADRGWMFYVGLPISALWALAAPATQALITRQVGADVQGRIQGALMSLVSLAGIAGPALFAGSFGWFIRDAAPLKLPGAPFFIASAVLASAVLIGW 411
BLAST of mRNA_H-canaliculatus_F_contig13.2484.1 vs. uniprot
Match: A0A1G4AG44_9GAMM (Uncharacterized protein n=1 Tax=Xanthomonadales bacterium RIFOXYA1_FULL_68_6 TaxID=1802655 RepID=A0A1G4AG44_9GAMM) HSP 1 Score: 76.6 bits (187), Expect = 4.470e-12 Identity = 46/157 (29.30%), Postives = 71/157 (45.22%), Query Frame = 3
Query: 1437 YVDYRFHWTPPEISYFFATYNILMAIAGGWVIRFIVPARLSEENGGLFGIFVQACATTVSGLCFRGWMLYPALAFGALQNITEPCLQAVMAPFVGADKQGSLQGAVMSL----RVVGEGVAAAVFTQVFSAGTSAGFEQAPFFLATLISLIGLAVAW 1895
+ +Y++ W ++++ A + I ++ +VP + E LFG+ + G+ GWM L AL + P QA++ VGAD QG +QGA+MSL +VG + A F A AP+ LA L+ IG V W
Sbjct: 34 FAEYQYRWNEQQVAWVLAAVGVCSVIVQAGLVGRVVP-KFGERRTLLFGLACGVVGFCIYGMADLGWMFLIGLPISALWGLAGPATQALITQQVGADVQGRVQGALMSLVSLAGIVGPMMFAGTFALFIGTTAPAHLPGAPWLLAALLLAIGWLVGW 189
BLAST of mRNA_H-canaliculatus_F_contig13.2484.1 vs. uniprot
Match: UPI00034AFC44 (TCR/Tet family MFS transporter n=2 Tax=Lysobacter TaxID=68 RepID=UPI00034AFC44) HSP 1 Score: 79.3 bits (194), Expect = 1.110e-11 Identity = 48/157 (30.57%), Postives = 73/157 (46.50%), Query Frame = 3
Query: 1437 YVDYRFHWTPPEISYFFATYNILMAIAGGWVIRFIVPARLSEENGGLFGIFVQACATTVSGLCFRGWMLYPALAFGALQNITEPCLQAVMAPFVGADKQGSLQGAVMSL----RVVGEGVAAAVFTQVFSAGTSAGFEQAPFFLATLISLIGLAVAW 1895
+ DY++HW E+ + + I ++ +V ARL E L G+ + GL GW+ L AL + P QA++ VGAD QG +QGA+MSL V+G + A F T AP+F+A + +G+A+AW
Sbjct: 249 FADYQYHWGLREVGWVLLVVGVFNIIVNVGLVGRVV-ARLGERRALLLGLSCGVTGFVIYGLAGTGWLFLLGLPISALWAMAAPATQALITRQVGADAQGRIQGALMSLVSLAGVLGPALFAGSFGYFIGKHTPLHLPGAPWFIAAALLAVGVAIAW 404
BLAST of mRNA_H-canaliculatus_F_contig13.2484.1 vs. uniprot
Match: UPI00190BC1FB (TCR/Tet family MFS transporter n=6 Tax=Lysobacter TaxID=68 RepID=UPI00190BC1FB) HSP 1 Score: 78.6 bits (192), Expect = 2.430e-11 Identity = 46/157 (29.30%), Postives = 73/157 (46.50%), Query Frame = 3
Query: 1437 YVDYRFHWTPPEISYFFATYNILMAIAGGWVIRFIVPARLSEENGGLFGIFVQACATTVSGLCFRGWMLYPALAFGALQNITEPCLQAVMAPFVGADKQGSLQGAVMSL----RVVGEGVAAAVFTQVFSAGTSAGFEQAPFFLATLISLIGLAVAW 1895
+ DY++ W P E+SY A +L I ++ IV A + E + G+ A + G GW+ L A+ + P QA++ VGAD QG +QGA+MSL ++G V A F APF +A+++ + + +AW
Sbjct: 287 FADYQYQWGPREVSYVLAIVGVLNVIVQAGLVGRIVHA-IGERRALIIGLCFGAVGFAIYGFADVGWVFLIGLPISAIWGLAAPSTQALITRQVGADVQGRIQGALMSLVSLAGIIGPAVFAGSFGYFIDDRAPVHLPGAPFLIASVLLCVAVGIAW 442 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13.2484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13.2484.1 >prot_H-canaliculatus_F_contig13.2484.1 ID=prot_H-canaliculatus_F_contig13.2484.1|Name=mRNA_H-canaliculatus_F_contig13.2484.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=579bp MAAAVSVVQLIFIPALSTSSDVFGRKALICFALGLHAMCVFTLATKVRSMback to top mRNA from alignment at H-canaliculatus_F_contig13:53921..60614- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13.2484.1 ID=mRNA_H-canaliculatus_F_contig13.2484.1|Name=mRNA_H-canaliculatus_F_contig13.2484.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6694bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13:53921..60614- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13:53921..60614- >mRNA_H-canaliculatus_F_contig13.2484.1 ID=mRNA_H-canaliculatus_F_contig13.2484.1|Name=mRNA_H-canaliculatus_F_contig13.2484.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3474bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13:53921..60614- (Hapterophycus canaliculatus Oshoro5f female)back to top |