mRNA_H-canaliculatus_F_contig12800.2334.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12800.2334.1
Unique NamemRNA_H-canaliculatus_F_contig12800.2334.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12800.2334.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.420e-37
Identity = 85/121 (70.25%), Postives = 89/121 (73.55%), Query Frame = -1 
Query:  117 RCREDNVLVEALPDTLELLLRACMEGLNIAGERAKREACAARGGKDGGSGARGTRQAAA-----AAVSELELARAVVSDSVYLAQLAPECFHEVVARVARKAEPERYALLFPLHLVAGGGD 464
            RCRED+VLVEALPDTLELLLRACMEGL+IAG RAKR + A                        A VSELELARAV+SDSVYLAQLAPECFHEVVARVARKAEPERY LLFPLHLV G  D
Sbjct:  166 RCREDSVLVEALPDTLELLLRACMEGLSIAGARAKRSSSALSHNXXXXXXXXXXXXXXXXXXXXATVSELELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVCGAPD 286
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BLAST of mRNA_H-canaliculatus_F_contig12800.2334.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.860e-20
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = -1 
Query:  117 AAAVSELELARAVVSDSVYLAQLAPECFHEVVARVARKAEPERYALLFPLHLVAGGGD 290
            A AV +LELARAV+SDSVYLAQLAPECFHEVVARVARKAEPERY LLFPLHLV G  D
Sbjct: 2077 AVAVLKLELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVRGAPD 2134
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BLAST of mRNA_H-canaliculatus_F_contig12800.2334.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.840e-14
Identity = 53/113 (46.90%), Postives = 63/113 (55.75%), Query Frame = -1 
Query:  120 REDNVLVEALPDTLELLLRACMEGLNIAGERAKREACAARGGKDGGSGARGTRQAAAAAVSELELARAVVSDSVYLAQLAPECFHEVVARVARKAEPERYALLFPLHLVAGGG 458
            + D  L EA+PDTLELLLRAC+EG ++A E  K            G     TR  AAA          V+S ++ L  LA  CF EVVARV+RK EP+ YALLFPL L   GG
Sbjct:  790 KRDAALAEAVPDTLELLLRACLEGRHLANEAQK------------GPAGDATRAQAAA----------VLSGALRLCALARGCFLEVVARVSRKMEPDWYALLFPLLLGGEGG 880
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12800.2334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KDH8_9PHAE1.420e-3770.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB77_ECTSI1.860e-2086.21SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YSR2_9STRA6.840e-1446.90RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12800contigH-canaliculatus_F_contig12800:2544..3007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size466
Cds size456
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.0880327-UTR-H-canaliculatus_F_contig12800:2543..25511622929003.0880327-UTR-H-canaliculatus_F_contig12800:2543..2551Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12800 2544..2551 +
1696845645.979802-UTR-H-canaliculatus_F_contig12800:2543..25511696845645.979802-UTR-H-canaliculatus_F_contig12800:2543..2551Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12800 2544..2551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.1017008-CDS-H-canaliculatus_F_contig12800:2551..30071622929003.1017008-CDS-H-canaliculatus_F_contig12800:2551..3007Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12800 2552..3007 +
1696845645.9935045-CDS-H-canaliculatus_F_contig12800:2551..30071696845645.9935045-CDS-H-canaliculatus_F_contig12800:2551..3007Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12800 2552..3007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12800.2334.1prot_H-canaliculatus_F_contig12800.2334.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12800 2552..3007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12800.2334.1

>prot_H-canaliculatus_F_contig12800.2334.1 ID=prot_H-canaliculatus_F_contig12800.2334.1|Name=mRNA_H-canaliculatus_F_contig12800.2334.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
MLPDPLRPCPLAHNPSRRGVGAAADFRRPFLAPGGIVTAAGDEVEREQES
VSLGLGLPRHAGDDLVEALRRQLSEVHAVRHHGARELELGDGSGGGLPRT
PGAAPAILASPSGARLSLRSLPGYVEALHAGAQEQFERVRERLYKHVIFS
TS
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mRNA from alignment at H-canaliculatus_F_contig12800:2544..3007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12800.2334.1 ID=mRNA_H-canaliculatus_F_contig12800.2334.1|Name=mRNA_H-canaliculatus_F_contig12800.2334.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=464bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12800:2544..3007+ (Hapterophycus canaliculatus Oshoro5f female)
CCACCGTCATGCTCCCCGATCCTCTCCGCCCCTGCCCTCTCGCTCATAAC
CCGTCCCGCAGGGGCGTCGGCGCTGCCGCCGACTTCCGCCGCCCGTTTCT
GGCCCCCGGCGGGATCGTCACCGCCGCCGGCGACGAGGTGGAGCGGGAAC
AGGAGAGCGTATCGCTCGGGCTCGGCCTTCCTCGCCACGCGGGCGACGAC
CTCGTGGAAGCACTCCGGCGCCAGCTGAGCGAGGTACACGCTGTCCGACA
CCACGGCGCGCGCGAGCTCGAGCTCGGAGACGGCAGCGGCGGCGGCCTGC
CGCGTACCCCTGGCGCCGCTCCCGCCATCCTTGCCTCCCCGAGCGGCGCA
CGCCTCTCTCTTCGCTCGCTCCCCGGCTATGTTGAGGCCCTCCATGCAGG
CGCGCAGGAGCAGTTCGAGCGTGTCCGGGAGCGCCTCTACAAGCACGTTA
TCTTCTCGACATCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12800:2544..3007+

>mRNA_H-canaliculatus_F_contig12800.2334.1 ID=mRNA_H-canaliculatus_F_contig12800.2334.1|Name=mRNA_H-canaliculatus_F_contig12800.2334.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12800:2544..3007+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCCCCGATCCTCTCCGCCCCTGCCCTCTCGCTCATAACCCGTCCCG
CAGGGGCGTCGGCGCTGCCGCCGACTTCCGCCGCCCGTTTCTGGCCCCCG
GCGGGATCGTCACCGCCGCCGGCGACGAGGTGGAGCGGGAACAGGAGAGC
GTATCGCTCGGGCTCGGCCTTCCTCGCCACGCGGGCGACGACCTCGTGGA
AGCACTCCGGCGCCAGCTGAGCGAGGTACACGCTGTCCGACACCACGGCG
CGCGCGAGCTCGAGCTCGGAGACGGCAGCGGCGGCGGCCTGCCGCGTACC
CCTGGCGCCGCTCCCGCCATCCTTGCCTCCCCGAGCGGCGCACGCCTCTC
TCTTCGCTCGCTCCCCGGCTATGTTGAGGCCCTCCATGCAGGCGCGCAGG
AGCAGTTCGAGCGTGTCCGGGAGCGCCTCTACAAGCACGTTATCTTCTCG
ACATCGATGCTCCCCGATCCTCTCCGCCCCTGCCCTCTCGCTCATAACCC
GTCCCGCAGGGGCGTCGGCGCTGCCGCCGACTTCCGCCGCCCGTTTCTGG
CCCCCGGCGGGATCGTCACCGCCGCCGGCGACGAGGTGGAGCGGGAACAG
GAGAGCGTATCGCTCGGGCTCGGCCTTCCTCGCCACGCGGGCGACGACCT
CGTGGAAGCACTCCGGCGCCAGCTGAGCGAGGTACACGCTGTCCGACACC
ACGGCGCGCGCGAGCTCGAGCTCGGAGACGGCAGCGGCGGCGGCCTGCCG
CGTACCCCTGGCGCCGCTCCCGCCATCCTTGCCTCCCCGAGCGGCGCACG
CCTCTCTCTTCGCTCGCTCCCCGGCTATGTTGAGGCCCTCCATGCAGGCG
CGCAGGAGCAGTTCGAGCGTGTCCGGGAGCGCCTCTACAAGCACGTTATC
TTCTCGACATCG
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