mRNA_H-canaliculatus_F_contig12771.2305.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12771.2305.1
Unique NamemRNA_H-canaliculatus_F_contig12771.2305.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12771.2305.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 8.280e-28
Identity = 55/83 (66.27%), Postives = 64/83 (77.11%), Query Frame = -1 
Query:    5 ITLGREFHDDLAVWGFVVEMATGPDGVTRLQQPLFNSVLQPPSRILWSDASGTAWMGGYCLETGWWWRIDFTDDVRRRLRKRV 253
            + LGREFH+DLA W  V+ MATGPDG+ +L+ PL  S LQ PSR L SDASG   MGG+CLE+G WWRIDFTDD+R RLR RV
Sbjct:  792 VRLGREFHEDLAFWRKVMAMATGPDGIVKLEAPLLCSFLQAPSRTLVSDASGDG-MGGFCLESGQWWRIDFTDDIRARLRNRV 873
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BLAST of mRNA_H-canaliculatus_F_contig12771.2305.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.200e-8
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = -1 
Query:    5 MGGYCLETGWWWRIDFTDDVRRRLRKRV 88
            MGGYCLETGWWWRIDF+ DVR RLR RV
Sbjct:    1 MGGYCLETGWWWRIDFSADVRARLRNRV 28
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12771.2305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPK1_9PHAE8.280e-2866.27Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCI7_9PHAE5.200e-885.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12771contigH-canaliculatus_F_contig12771:728..1079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size352
Cds size351
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.220993-UTR-H-canaliculatus_F_contig12771:727..7281622928998.220993-UTR-H-canaliculatus_F_contig12771:727..728Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12771 728..728 +
1696845644.0615132-UTR-H-canaliculatus_F_contig12771:727..7281696845644.0615132-UTR-H-canaliculatus_F_contig12771:727..728Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12771 728..728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.2394462-CDS-H-canaliculatus_F_contig12771:728..10791622928998.2394462-CDS-H-canaliculatus_F_contig12771:728..1079Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12771 729..1079 +
1696845644.0707464-CDS-H-canaliculatus_F_contig12771:728..10791696845644.0707464-CDS-H-canaliculatus_F_contig12771:728..1079Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12771 729..1079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12771.2305.1prot_H-canaliculatus_F_contig12771.2305.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12771 729..1079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12771.2305.1

>prot_H-canaliculatus_F_contig12771.2305.1 ID=prot_H-canaliculatus_F_contig12771.2305.1|Name=mRNA_H-canaliculatus_F_contig12771.2305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
MHSFAEAPPHVVREIYSPPPPRLQAVSSHPCRPTRITPQYAGRRLQDAVK
KRLLQPCDAVGACGHLYHEPPHCEIIVELSPQSDESVLLAITGEEIRSIM
LCDPDIVPTKMSNEVA*
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mRNA from alignment at H-canaliculatus_F_contig12771:728..1079+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12771.2305.1 ID=mRNA_H-canaliculatus_F_contig12771.2305.1|Name=mRNA_H-canaliculatus_F_contig12771.2305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=352bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12771:728..1079+ (Hapterophycus canaliculatus Oshoro5f female)
CATGCACTCGTTTGCGGAGGCGCCTCCTCACGTCGTCCGTGAAATCTATT
CGCCACCACCACCCCGTCTCCAAGCAGTATCCTCCCATCCATGCCGTCCC
ACTCGCATCACTCCACAGTATGCGGGACGGCGGCTGCAGGACGCTGTTAA
AAAGAGGTTGCTGCAGCCTTGTGACGCCGTCGGGGCCTGTGGCCATCTCT
ACCACGAACCCCCACACTGCGAGATCATCGTGGAACTCTCTCCCCAGAGT
GATGAGTCTGTTCTGCTTGCTATCACGGGGGAAGAAATACGATCTATCAT
GTTGTGCGATCCTGACATTGTGCCGACAAAAATGAGTAACGAAGTAGCGT
AG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12771:728..1079+

>mRNA_H-canaliculatus_F_contig12771.2305.1 ID=mRNA_H-canaliculatus_F_contig12771.2305.1|Name=mRNA_H-canaliculatus_F_contig12771.2305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12771:728..1079+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCACTCGTTTGCGGAGGCGCCTCCTCACGTCGTCCGTGAAATCTATTC
GCCACCACCACCCCGTCTCCAAGCAGTATCCTCCCATCCATGCCGTCCCA
CTCGCATCACTCCACAGTATGCGGGACGGCGGCTGCAGGACGCTGTTAAA
AAGAGGTTGCTGCAGCCTTGTGACGCCGTCGGGGCCTGTGGCCATCTCTA
CCACGAACCCCCACACTGCGAGATCATCGTGGAACTCTCTCCCCAGAGTG
ATGAGTCTGTTCTGCTTGCTATCACGGGGGAAGAAATACGATCTATCATG
TTGTGCGATCCTGACATTGTGCCGACAAAAATGAGTAACGAAGTAGCGTA
GATGCACTCGTTTGCGGAGGCGCCTCCTCACGTCGTCCGTGAAATCTATT
CGCCACCACCACCCCGTCTCCAAGCAGTATCCTCCCATCCATGCCGTCCC
ACTCGCATCACTCCACAGTATGCGGGACGGCGGCTGCAGGACGCTGTTAA
AAAGAGGTTGCTGCAGCCTTGTGACGCCGTCGGGGCCTGTGGCCATCTCT
ACCACGAACCCCCACACTGCGAGATCATCGTGGAACTCTCTCCCCAGAGT
GATGAGTCTGTTCTGCTTGCTATCACGGGGGAAGAAATACGATCTATCAT
GTTGTGCGATCCTGACATTGTGCCGACAAAAATGAGTAACGAAGTAGCGT
AG
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