mRNA_H-canaliculatus_F_contig12754.2296.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12754.2296.1
Unique NamemRNA_H-canaliculatus_F_contig12754.2296.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12754.2296.1 vs. uniprot
Match: A0A6H5L328_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L328_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 8.470e-61
Identity = 104/118 (88.14%), Postives = 114/118 (96.61%), Query Frame = 1 
Query:    1 GSGKSSLVSAILGEMTKVDGRICIDGSVAYVAQTAWIINASLKDNVLMGRPFDEGRYREVLQVCDMEQDLLQLPAGDKTEIGEKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 354
            GSGKSSLVSA+LGEMTKV+GR+ IDGSVAYVAQTAWIINA+LK+NVLMGRPFDE RY++VL VCDM+QDL QLPAGD+TEIG+KGINLSGGQKQRVSIARAAYANADVYILDDPLSAV
Sbjct:  526 GSGKSSLVSALLGEMTKVEGRVSIDGSVAYVAQTAWIINATLKENVLMGRPFDEARYQKVLDVCDMKQDLSQLPAGDETEIGDKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 643
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BLAST of mRNA_H-canaliculatus_F_contig12754.2296.1 vs. uniprot
Match: D8LMY6_ECTSI (ABC transporter ABCC.12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMY6_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 3.430e-60
Identity = 102/118 (86.44%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:    1 GSGKSSLVSAILGEMTKVDGRICIDGSVAYVAQTAWIINASLKDNVLMGRPFDEGRYREVLQVCDMEQDLLQLPAGDKTEIGEKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 354
            GSGKSSLVSA+LGEMTKV+GR+ IDGSVAYVAQTAWIINA+LK+N+LMGRPFDE  Y++VL VCDM+QDL QLPAGD+TEIG+KGINLSGGQKQRVSIARAAYANADVYILDDPLSAV
Sbjct:  437 GSGKSSLVSALLGEMTKVEGRVSIDGSVAYVAQTAWIINATLKENILMGRPFDEALYQKVLDVCDMKQDLSQLPAGDETEIGDKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 554
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BLAST of mRNA_H-canaliculatus_F_contig12754.2296.1 vs. uniprot
Match: A0A835YM87_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM87_9STRA)

HSP 1 Score: 188 bits (477), Expect = 5.460e-53
Identity = 89/118 (75.42%), Postives = 106/118 (89.83%), Query Frame = 1 
Query:    1 GSGKSSLVSAILGEMTKVDGRICIDGSVAYVAQTAWIINASLKDNVLMGRPFDEGRYREVLQVCDMEQDLLQLPAGDKTEIGEKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 354
            GSGKSSLV+A+LGEMT+V GR+ +DGSVAYVAQTAWI+NA+L++NVLMG PFD  RY  V++VC ++QD   LPAGD+TEIGEKGINLSGGQKQRVS+ARAAYA+ADVY+ DDPLSAV
Sbjct:  460 GSGKSSLVAAVLGEMTRVRGRVTVDGSVAYVAQTAWIVNATLRENVLMGLPFDAARYDRVVEVCALQQDFAMLPAGDRTEIGEKGINLSGGQKQRVSLARAAYADADVYVFDDPLSAV 577
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BLAST of mRNA_H-canaliculatus_F_contig12754.2296.1 vs. uniprot
Match: A0A820GT43_9BILA (Hypothetical protein (Fragment) n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820GT43_9BILA)

HSP 1 Score: 175 bits (443), Expect = 6.050e-51
Identity = 80/118 (67.80%), Postives = 104/118 (88.14%), Query Frame = 1 
Query:    1 GSGKSSLVSAILGEMTKVDGRICIDGSVAYVAQTAWIINASLKDNVLMGRPFDEGRYREVLQVCDMEQDLLQLPAGDKTEIGEKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 354
            GSGKSS++SA+LGEM KVDG + I G++AYV QTAWI+NA+LK+N+L G+ FD+  Y +V++ C ++QDL+ LPAGD+TEIGEKGINLSGGQ+QRVS+ARA Y+NAD+Y+LDDPLSAV
Sbjct:  123 GSGKSSILSALLGEMIKVDGHVRISGNIAYVPQTAWILNATLKENILFGKDFDKKLYDQVIEACALKQDLMMLPAGDETEIGEKGINLSGGQRQRVSLARALYSNADIYLLDDPLSAV 240
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BLAST of mRNA_H-canaliculatus_F_contig12754.2296.1 vs. uniprot
Match: A0A816CVN4_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A816CVN4_9BILA)

HSP 1 Score: 171 bits (434), Expect = 1.390e-48
Identity = 79/118 (66.95%), Postives = 102/118 (86.44%), Query Frame = 1 
Query:    1 GSGKSSLVSAILGEMTKVDGRICIDGSVAYVAQTAWIINASLKDNVLMGRPFDEGRYREVLQVCDMEQDLLQLPAGDKTEIGEKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 354
            GSGKSS+++A+LGEM KV+GR+ I G +AYV QTAWI+N +LK+N+L GR FD+  Y +V++ C +EQDL+ LPA D+TEIGEKGINLSGGQ+QRVS+ARA Y+NAD+Y+LDDPLSAV
Sbjct:  188 GSGKSSILAALLGEMIKVNGRVSISGKIAYVPQTAWIMNTTLKENILFGRDFDKKLYDQVIEACALEQDLVMLPAKDQTEIGEKGINLSGGQRQRVSLARALYSNADIYLLDDPLSAV 305
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BLAST of mRNA_H-canaliculatus_F_contig12754.2296.1 vs. uniprot
Match: A0A814R5W7_9BILA (Hypothetical protein n=2 Tax=Adineta steineri TaxID=433720 RepID=A0A814R5W7_9BILA)

HSP 1 Score: 175 bits (443), Expect = 2.070e-48
Identity = 80/118 (67.80%), Postives = 104/118 (88.14%), Query Frame = 1 
Query:    1 GSGKSSLVSAILGEMTKVDGRICIDGSVAYVAQTAWIINASLKDNVLMGRPFDEGRYREVLQVCDMEQDLLQLPAGDKTEIGEKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 354
            GSGKSS++SA+LGEM KVDG + I G++AYV QTAWI+NA+LK+N+L G+ FD+  Y +V++ C ++QDL+ LPAGD+TEIGEKGINLSGGQ+QRVS+ARA Y+NAD+Y+LDDPLSAV
Sbjct:  949 GSGKSSILSALLGEMIKVDGHVRISGNIAYVPQTAWILNATLKENILFGKDFDKKLYDQVIEACALKQDLMMLPAGDETEIGEKGINLSGGQRQRVSLARALYSNADIYLLDDPLSAV 1066
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BLAST of mRNA_H-canaliculatus_F_contig12754.2296.1 vs. uniprot
Match: A0A4P9VY26_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9VY26_9FUNG)

HSP 1 Score: 162 bits (409), Expect = 2.590e-48
Identity = 74/118 (62.71%), Postives = 97/118 (82.20%), Query Frame = 1 
Query:    1 GSGKSSLVSAILGEMTKVDGRICIDGSVAYVAQTAWIINASLKDNVLMGRPFDEGRYREVLQVCDMEQDLLQLPAGDKTEIGEKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 354
            GSGKSS++SAILGEM +V G + + GS+AYV QTAWI+NA++++N+L G+P+DE  Y E L+ C +  DL  LP GD+TEIGE+GINLSGGQKQRV+IARA Y+ A++Y+ DDPLSAV
Sbjct:   22 GSGKSSIISAILGEMYRVKGTVTVRGSIAYVPQTAWIMNATVRENILFGKPYDERYYAETLRACCLNTDLEMLPGGDQTEIGERGINLSGGQKQRVAIARAVYSRAEIYLFDDPLSAV 139
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BLAST of mRNA_H-canaliculatus_F_contig12754.2296.1 vs. uniprot
Match: A0A0B7AKI9_9EUPU (ABC transporter domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AKI9_9EUPU)

HSP 1 Score: 163 bits (412), Expect = 2.710e-48
Identity = 80/118 (67.80%), Postives = 96/118 (81.36%), Query Frame = 1 
Query:    1 GSGKSSLVSAILGEMTKVDGRICIDGSVAYVAQTAWIINASLKDNVLMGRPFDEGRYREVLQVCDMEQDLLQLPAGDKTEIGEKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 354
            GSGKSSL+SA+LGEM K  G  CI  ++AYV Q AWI NA++KDN+L G+PF+  RY++VL  C +E+DL  L AGD TEIGEKGINLSGGQKQRVS+ARA Y+NAD+YI DDPLSAV
Sbjct:   73 GSGKSSLMSALLGEMEKRSGSACIKSNLAYVPQQAWIQNATVKDNILFGKPFNSKRYKKVLFACALERDLEILSAGDLTEIGEKGINLSGGQKQRVSLARAVYSNADIYIFDDPLSAV 190
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BLAST of mRNA_H-canaliculatus_F_contig12754.2296.1 vs. uniprot
Match: Q4SX22_TETNG (Chromosome undetermined SCAF13133, whole genome shotgun sequence (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4SX22_TETNG)

HSP 1 Score: 160 bits (405), Expect = 6.870e-48
Identity = 78/118 (66.10%), Postives = 96/118 (81.36%), Query Frame = 1 
Query:    1 GSGKSSLVSAILGEMTKVDGRICIDGSVAYVAQTAWIINASLKDNVLMGRPFDEGRYREVLQVCDMEQDLLQLPAGDKTEIGEKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 354
            G GKSSL+SA+LGEM K++G + I GSVAYV Q AWI NA+L+DN+L G P++E +Y  VL+ C +  DL  LP GD TEIGEKGINLSGGQ+QRVS+ARA Y++ADVY+LDDPLSAV
Sbjct:   43 GCGKSSLISALLGEMEKLEGEVSIRGSVAYVPQQAWIQNATLRDNILFGEPYNEQKYCCVLEACALTADLEVLPGGDMTEIGEKGINLSGGQRQRVSLARALYSDADVYLLDDPLSAV 160
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BLAST of mRNA_H-canaliculatus_F_contig12754.2296.1 vs. uniprot
Match: UPI000C25255B (multidrug resistance-associated protein 1-like n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C25255B)

HSP 1 Score: 173 bits (438), Expect = 9.130e-48
Identity = 84/118 (71.19%), Postives = 99/118 (83.90%), Query Frame = 1 
Query:    1 GSGKSSLVSAILGEMTKVDGRICIDGSVAYVAQTAWIINASLKDNVLMGRPFDEGRYREVLQVCDMEQDLLQLPAGDKTEIGEKGINLSGGQKQRVSIARAAYANADVYILDDPLSAV 354
            GSGKSSLVSA LGEM K+ GR+   GSVAYV+Q AWI NA+LKDN+L G+PFD+  Y +V++ C ++ DL  LPAGD+TEIGEKGINLSGGQKQRVS+ARA YANAD+Y LDDPLSAV
Sbjct:  136 GSGKSSLVSAFLGEMDKLSGRVNTYGSVAYVSQQAWIQNATLKDNILFGKPFDKALYNDVIEACALKPDLDMLPAGDQTEIGEKGINLSGGQKQRVSLARAVYANADIYFLDDPLSAV 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12754.2296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L328_9PHAE8.470e-6188.14ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LMY6_ECTSI3.430e-6086.44ABC transporter ABCC.12 n=1 Tax=Ectocarpus silicul... [more]
A0A835YM87_9STRA5.460e-5375.42P-loop containing nucleoside triphosphate hydrolas... [more]
A0A820GT43_9BILA6.050e-5167.80Hypothetical protein (Fragment) n=1 Tax=Adineta st... [more]
A0A816CVN4_9BILA1.390e-4866.95Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A814R5W7_9BILA2.070e-4867.80Hypothetical protein n=2 Tax=Adineta steineri TaxI... [more]
A0A4P9VY26_9FUNG2.590e-4862.71P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0B7AKI9_9EUPU2.710e-4867.80ABC transporter domain-containing protein (Fragmen... [more]
Q4SX22_TETNG6.870e-4866.10Chromosome undetermined SCAF13133, whole genome sh... [more]
UPI000C25255B9.130e-4871.19multidrug resistance-associated protein 1-like n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12754contigH-canaliculatus_F_contig12754:152..1203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.8
Seed ortholog evalue5.4e-51
Seed eggNOG ortholog2880.D8LMY6
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.016875-CDS-H-canaliculatus_F_contig12754:151..3011622928997.016875-CDS-H-canaliculatus_F_contig12754:151..301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12754 152..301 -
1696845643.5435019-CDS-H-canaliculatus_F_contig12754:151..3011696845643.5435019-CDS-H-canaliculatus_F_contig12754:151..301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12754 152..301 -
1622928997.041609-CDS-H-canaliculatus_F_contig12754:999..12031622928997.041609-CDS-H-canaliculatus_F_contig12754:999..1203Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12754 1000..1203 -
1696845643.5558317-CDS-H-canaliculatus_F_contig12754:999..12031696845643.5558317-CDS-H-canaliculatus_F_contig12754:999..1203Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12754 1000..1203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12754.2296.1prot_H-canaliculatus_F_contig12754.2296.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12754 152..1203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12754.2296.1

>prot_H-canaliculatus_F_contig12754.2296.1 ID=prot_H-canaliculatus_F_contig12754.2296.1|Name=mRNA_H-canaliculatus_F_contig12754.2296.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
GSGKSSLVSAILGEMTKVDGRICIDGSVAYVAQTAWIINASLKDNVLMGR
PFDEGRYREVLQVCDMEQDLLQLPAGDKTEIGEKGINLSGGQKQRVSIAR
AAYANADVYILDDPLSAV
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mRNA from alignment at H-canaliculatus_F_contig12754:152..1203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12754.2296.1 ID=mRNA_H-canaliculatus_F_contig12754.2296.1|Name=mRNA_H-canaliculatus_F_contig12754.2296.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1052bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12754:152..1203- (Hapterophycus canaliculatus Oshoro5f female)
GGCAGCGGGAAGAGCAGCCTCGTGTCGGCGATCCTCGGAGAGATGACCAA
GGTGGACGGAAGGATCTGCATCGACGGGAGCGTGGCGTACGTGGCCCAGA
CGGCGTGGATCATCAACGCCTCCCTCAAGGACAACGTGCTCATGGGCCGC
CCCTTCGACGAGGGCCGGTACCGCGAGGTGCTTCAAGTTTGCGACATGGA
GCAGGTGCGGGTTTTAAGGGAGGAGACCGCGGGCATCTGCGGCGGCGCGG
AGAGCGTGCCGCGTTCGGCGAGCTGAACCCTTTTTTTTGTTGTCCATTTT
TTTGTTGAACGGTGGCACGACGTGCTTGCGATGCTTCTAGCTTGCGATTG
CTGTTGATAGCAGAGGGGACAAATCCGCGCGGTGGAGGCGTTTTTTGGGG
CCTATGTCGGGGTCTTCGTTGGTTCAGCATCCGCAGCGTGTAGTTAGTGT
GCGAGGGGACGCCCTTCTTGAGCAGTCGGCGTCCTCTCCGCTGGGGCGGC
AGCGGTAGCGGCCGAGCCTGAGAAGGTTTGTGCAGTATGACGGCAAACAG
CGCCCAACAGCAGTCCGGCGACTTAGTCGCGCATCTCAGTGTGGACTTGA
ACCGCTGACTTTTTGCAATAATTGCATAACATTTCGGTGCGTGCGCGATG
GCGGCACGCGCGCATACTCTCCTGCCGCCCCTCTTCTGGGGAACGTCCGG
GCAGGACCCGCTGTCCCACGCGCTGTACAGCGGACACCCGATGCATCCAG
CCCGACCTCTTTCGCCGCACCCGGGACGGCTAGCGATCACTCCGAAAAGC
TATCACTCCGAAACACCGATACCCAGCGTTCCCGTTCGCCGTAACGATTG
ACCCGTGACGTCACGTACGACATGTCACGCCGCCCCGCGCCACGTTCACC
AGGACCTGCTCCAGCTGCCCGCCGGGGACAAGACCGAGATCGGCGAGAAG
GGCATCAACCTGTCGGGCGGACAGAAGCAGAGGGTTTCCATCGCCAGGGC
GGCGTACGCGAACGCGGACGTGTACATCCTGGACGACCCTCTGTCCGCCG
TG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12754:152..1203-

>mRNA_H-canaliculatus_F_contig12754.2296.1 ID=mRNA_H-canaliculatus_F_contig12754.2296.1|Name=mRNA_H-canaliculatus_F_contig12754.2296.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12754:152..1203- (Hapterophycus canaliculatus Oshoro5f female)
GGCAGCGGGAAGAGCAGCCTCGTGTCGGCGATCCTCGGAGAGATGACCAA
GGTGGACGGAAGGATCTGCATCGACGGGAGCGTGGCGTACGTGGCCCAGA
CGGCGTGGATCATCAACGCCTCCCTCAAGGACAACGTGCTCATGGGCCGC
CCCTTCGACGAGGGCCGGTACCGCGAGGTGCTTCAAGTTTGCGACATGGA
GCAGGGCAGCGGGAAGAGCAGCCTCGTGTCGGCGATCCTCGGAGAGATGA
CCAAGGTGGACGGAAGGATCTGCATCGACGGGAGCGTGGCGTACGTGGCC
CAGACGGCGTGGATCATCAACGCCTCCCTCAAGGACAACGTGCTCATGGG
CCGCCCCTTCGACGAGGGCCGGTACCGCGAGGTGCTTCAAGTTTGCGACA
TGGAGCAGGACCTGCTCCAGCTGCCCGCCGGGGACAAGACCGAGATCGGC
GAGAAGGGCATCAACCTGTCGGGCGGACAGAAGCAGAGGGTTTCCATCGC
CAGGGCGGCGTACGCGAACGCGGACGTGTACATCCTGGACGACCCTCTGT
CCGCCGTGGACCTGCTCCAGCTGCCCGCCGGGGACAAGACCGAGATCGGC
GAGAAGGGCATCAACCTGTCGGGCGGACAGAAGCAGAGGGTTTCCATCGC
CAGGGCGGCGTACGCGAACGCGGACGTGTACATCCTGGACGACCCTCTGT
CCGCCGTG
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