mRNA_H-canaliculatus_F_contig12722.2271.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12722.2271.1 vs. uniprot
Match: D8LU31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU31_ECTSI) HSP 1 Score: 353 bits (906), Expect = 1.760e-116 Identity = 206/274 (75.18%), Postives = 228/274 (83.21%), Query Frame = 1
Query: 1 LVILERALPRAAEKTVRLLEPGSALLARWLPVFFVPSLVVLPLSPIPTSLNALKLLLVVCGGWFLSLTSTAAVVTALSPSARPGDAVDAPVTAPSKPAPPPVFRGSVVRGLGVCAAVAGLLAVAG-AGASPGQAAPSAVPAVLAKLSKPAAQLSLLLATLFGFSAGTRVPRRVSKAVHPVVTCAAVTMAAAAAIGKGVGLSFFDVLRSYLTRSRCPVHLGAGDLLLGLLGPSVLSFAVQMYRRRSLIFKNAKQVAGGSLFCASSGLFGTALVSR 819
LV+LERA P++AE V LEPG+ALLARWLPVFF PSLVVLPLSP P+S+NALKLLL+VCGGWF+SL+STAAVV ALSP P DA AP K P VFRG VRGLG A V+G+LAVAG +G +PG A+L KLSKPAAQLSLLLATLFGFSAGTR+PRRVSKAVHPVV C+AV M AAAIGKGVGL F D+LRSYLTRSRCPVHLGAGD+LLGLLGPSVLSFAVQMYRRR+LIF++AKQVA GS+FCASSGLFGTALVSR
Sbjct: 139 LVVLERAAPKSAEDIVSSLEPGAALLARWLPVFFAPSLVVLPLSPPPSSVNALKLLLLVCGGWFVSLSSTAAVVGALSP---PADASTTDSAAPPKTLAP-VFRGPFVRGLGAGAVVSGVLAVAGGSGQAPG--------ALLTKLSKPAAQLSLLLATLFGFSAGTRMPRRVSKAVHPVVMCSAVAMGTAAAIGKGVGLGFADMLRSYLTRSRCPVHLGAGDVLLGLLGPSVLSFAVQMYRRRNLIFEDAKQVAAGSVFCASSGLFGTALVSR 400
BLAST of mRNA_H-canaliculatus_F_contig12722.2271.1 vs. uniprot
Match: A0A7S1FQA4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQA4_9STRA) HSP 1 Score: 148 bits (374), Expect = 1.030e-37 Identity = 112/265 (42.26%), Postives = 145/265 (54.72%), Query Frame = 1
Query: 28 RAAEKTVRLLEPGSALLARWLPVFFVPSLVVLPLS-PIPTSLNALKLLLVVCGGWFLSLTSTAAVVTALSPSARPGDAVDAPVTAPSKPAPPPVFRGSVVRGLGVCAAVAGLLAVAGAGASPGQAAPSAVPAVLAKLSKPAAQLSLLLATLFGFSAGTRVPRRVSKAVHPVVTCAAVTMAAAAAIGKGVGLSFFDVLRSYLTRSRCPVHLGAGDLLLGLLGPSVLSFAVQMYRRRSLIFKNAKQVAGGSLFCASSGLFGTALVSR 819
R K RLL+PG+ LLARWLP+FFVPSLV LPL+ P+ +L A K+ +VV GG+ SL +T+ V A+ P + K A PP A + GLL A G AA V A L PA + LL TL F G R+P +++KA+HP+V C ++ AA+GK G SF L Y T S G GDLLL LLGP+V+S A+QMY RR L+ +NA++VA G A+ GLFGTA + R
Sbjct: 144 RWGNKVYRLLDPGAVLLARWLPIFFVPSLVTLPLAEPLGGALEAAKVGIVVAGGFLFSLLTTSWCVAAVRPKGQ-------------KTASPPSKSAGXXXXXPFSAGLLGLLVRLTA---LGGAADLLAGVVNAGLRAPARYVYLLCGTLASFVYGARLPPKITKALHPLVVCTLLSWTGVAALGKLTGSSFRATLAGYRTGSWTT---GPGDLLLFLLGPAVISLALQMYGRRELVRQNAREVAAGVTGSAAGGLFGTAFLVR 389
BLAST of mRNA_H-canaliculatus_F_contig12722.2271.1 vs. uniprot
Match: A0A7S3VAA5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAA5_9STRA) HSP 1 Score: 142 bits (359), Expect = 1.700e-35 Identity = 104/265 (39.25%), Postives = 141/265 (53.21%), Query Frame = 1
Query: 52 LLEPGSALLARWLPVFFVPSLVVLPLSP-IPTSLNALKLLLVVCGGWFLSLTSTAAVVTA----LSPSARPGDAVDAPV---TAPSKPAPPPV-FRGSVVRGLGVCAAVAGLLAVAGAGASPGQAAPSAVPAVLAKLSKPAAQLSLLLATLFGFSAGTRVPRRVSKAVHPVVTCAAVTMAAAAAIGKGVGLSFFDVLRSYLTRSRCPVHLGAGDLLLGLLGPSVLSFAVQMYRRRSLIFKNAKQVAGGSLFCASSGLFGTALVSR 819
LL PG+A+LA+WLPVFFVPSLV LPL+ + +SL K+ VV G+F +L STA V L ++ DA PV T + PPP F + L CA + + + +S L P L++L TL F+ G R+P+ +K VHP+VTC +T A G SF +L SY S CPVHLGAGDLLL +LGP+V++ A QMY R+ L+ +N +V + GLFGTA ++R
Sbjct: 153 LLSPGAAVLAKWLPVFFVPSLVTLPLAQSLGSSLEVFKVGAVVVAGFFFTLFSTAFSVIGIRKILGTASSSADAQSLPVVQSTNVEESTPPPKPFSDATFNRLVACATTSAIATIVAIKSS-----------ASIHLITPMTALTMLCTTLASFTFGARLPKSFTKTVHPLVTCTTLTWTAMKVFALSTGQSFRSMLTSYKVGSTCPVHLGAGDLLLFMLGPAVVALACQMYDRKKLMKENIAEVGTAVGVSSIGGLFGTAAMAR 406
BLAST of mRNA_H-canaliculatus_F_contig12722.2271.1 vs. uniprot
Match: A0A7S0BG00_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BG00_9RHOD) HSP 1 Score: 137 bits (345), Expect = 1.260e-33 Identity = 97/273 (35.53%), Postives = 147/273 (53.85%), Query Frame = 1
Query: 1 LVILERALPRAAEKTVRLLEPGSALLARWLPVFFVPSLVVLPLSPIPTSLNALKLLLVVCGGWFLSLTSTAAVVTALSPSARPGDAVDAPVTAPSKPAPPPVFRGSVVRGLGVCAAVAGLLAVAGAGASPGQAAPSAVPAVLAKLSKPAAQLSLLLATLFGFSAGTRVPRRVSKAVHPVVTCAAVTMAAAAAIGKGVGLSFFDVLRSYLTRSRCPVHLGAGDLLLGLLGPSVLSFAVQMYRRRSLIFKNAKQVAGGSLFCASSGLFGTALVSR 819
L+ L+ P + K +PG LA+WL V F PSLVVLPL+P+P S + L+ + V+ GW +SL S A V AL + + + V P+ P P +R + + LG A LL++A +G +P AA + L ATL GF G + + V K +HP++TC + A + + G++ +L Y+TR+ + +G GDLLL LLGP+V+SFA QMY R+ ++ + + +V G S F + GLFGTA ++R
Sbjct: 133 LLALDVVRPEVSTKVAGAYQPGVNFLAKWLAVCFAPSLVVLPLAPMPASADLLRTVCVLFLGWAISLLSAAYVAIALQKLSVSEEEEE--VLTPAAPIVMPPYR-KLAKILGASTAGTFLLSIASSGFTPFVAAYT------------------LSATLLGFCLGNLLNKDVKKIIHPLITCTLTALCAIFVLAQASGVATAGLLAGYITRAHNILKVGGGDLLLSLLGPAVVSFAFQMYSRKKIMKQRSLEVIGASFFASIFGLFGTAFLAR 384
BLAST of mRNA_H-canaliculatus_F_contig12722.2271.1 vs. uniprot
Match: A0A7S2PQH5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PQH5_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.990e-32 Identity = 96/270 (35.56%), Postives = 147/270 (54.44%), Query Frame = 1
Query: 55 LEPGSALLARWLPVFFVPSLVVLPLS-PIPTSLNALKLLLVVCGGWFLSLTSTAAVVTALS-----------PSARPGDAVDAPVTAPSKPAPPPVFRGSVVRGLGVCAAVAGLLAVAGAGASPGQAAPSAVPAVLAKLSKPAAQLSLLLATLFGFSAGTRVPRRVSKAVHPVVTCAAVTMAAAAAIGKGVGLSFFDVLRSY---LTRSRCPVHLGAGDLLLGLLGPSVLSFAVQMYRRRSLIFKNAKQVAGGSLFCASSGLFGTALVSR 819
L PG+ LLA+WLPVFFVPSL+ LPL+ + SL LKL V+ GG+F +L +TA V + +AV APV A + P PP F ++++ L A ++G+ AV A+ +L P LL +TL F G +P+ +K VHP++TC+++T A+ + G +F D+++ Y ++ P+ GAGD+LL LLGP+V++ A QMY R+ L+ +N K+V ++ + GL+GTA R
Sbjct: 144 LNPGAGLLAKWLPVFFVPSLITLPLAGSLGNSLEILKLFTVIIGGFFFTLFTTAWSVLGIRRLMGGXXXXXXXXVSATEAV-APVKATTNP-PPKAFSTTLLKNLATLAGISGIAAV------------GAIKQSATQLITPLQSSFLLFSTLASFVFGANLPKSFTKTVHPLITCSSLTWVASTLMASLTGRTFIDIIKLYKAGISPLAAPLSTGAGDVLLFLLGPAVVALACQMYGRKKLMRENIKEVGISTIVSSLGGLYGTAAAVR 399
BLAST of mRNA_H-canaliculatus_F_contig12722.2271.1 vs. uniprot
Match: A0A1E7FHY6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHY6_9STRA) HSP 1 Score: 132 bits (331), Expect = 2.040e-31 Identity = 105/268 (39.18%), Postives = 144/268 (53.73%), Query Frame = 1
Query: 49 RLLEPGSALLARWLPVFFVPSLVVLPL----SPIPTSLNALKLLLVVCGGWFLSLTSTAAVVTALSP--SARPGDAVDAPVTAPSKPAPPP-VFRGSVVRGLGVCAAVAGLLAVAGAGASPGQAAPSAVPAVLAKLSKPAAQLSLLLATLFGFSAGTRVPRRVSKAVHPVVTCAAVTMAAAAAIGKGVGLSFFDVLRSYLTRSRCPVH----LGAGDLLLGLLGPSVLSFAVQMYRRRSLIFKNAKQVAGGSLFCASSGLFGTALVSR 819
R+L PG+ALLA+WLPVFFVPSLV LPL + S LK L VV GG+F +L +TA V + D V A P P P F +++ L + A ++GL A+ GA SP A S +L KL P L L TL GF G+R+ +++ K +HP++TC+A+T A K G +FF +L +Y + H GAGD+LL LGP+V+S ++ MY +R LI N Q+ + GLFGTA + R
Sbjct: 178 RILSPGAALLAKWLPVFFVPSLVTLPLVGGLESLGGSTEILKTLAVVVGGFFFTLLTTAGAVIGVGKLMGKEKDDMVVATTAMPDVPVPVTRPFSDELMKKLRIVAILSGLAALEGA--SPVFA--SGPAKLLIKLKTPILSLLLGSTTLSGFVYGSRLSKQIKKIIHPLITCSALTWAVMVVFAKCTGRTFFSLLSTY--KMGKGFHGLSGTGAGDILLFALGPAVMSLSISMYDKRDLIRDNFLQIISAVSVSSIGGLFGTAWMVR 439
BLAST of mRNA_H-canaliculatus_F_contig12722.2271.1 vs. uniprot
Match: B8CB30_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB30_THAPS) HSP 1 Score: 130 bits (328), Expect = 3.700e-31 Identity = 101/276 (36.59%), Postives = 145/276 (52.54%), Query Frame = 1
Query: 28 RAAEKTVRLLEPGSALLARWLPVFFVPSLVVLPL-SPIPTSLNALKLLLVVCGGWFLSLTSTAAVV----------TALSP-SARPGDAVDAPVTAPSKPAPPPVFRGSVVRGLGVCAAVAGLLAVAGAGASPGQAAPSAVPAVLAKLSKPAAQLSLLLATLFGFSAGTRVPRRVSKAVHPVVTCAAVTMAAAAAIGKGVGLSFFDVLRSYLTRSRCPVHLGAGDLLLGLLGPSVLSFAVQMYRRRSLIFKNAKQVAGGSLFCASSGLFGTALVSR 819
+ + +LL PG+ LLA+WLPVFFVPSL+ LPL S + + LK+L VV GG+F +L +T+ V TA P P DA + PVT P F ++ R L A + G+ +V SP + +KP LL TL F G +P+R +K VHP+VTCA +T A+ G +F +L+SY + P+ GAGD+LL LLGP+V++ + QMY R+ L+ +N +V +L + GL+GTA R
Sbjct: 141 KMGNEVYQLLNPGAMLLAKWLPVFFVPSLITLPLASGLGNAWEVLKVLSVVIGGFFFTLFTTSWSVLGIRKLMGGDTATEPVPIYPVDASNVPVTNKQ----PQAFSLTLFRTLKAFAWLTGISSVTLINKSPAS-----------QWNKPLQSAFLLSITLSSFVFGANLPKRFTKTVHPLVTCAGLTWLASKTFAMLTGSTFLAILQSYKAGTLAPLSAGAGDVLLFLLGPAVVALSCQMYGRKKLMRENIPEVGISTLVSSLGGLYGTAAAVR 401
BLAST of mRNA_H-canaliculatus_F_contig12722.2271.1 vs. uniprot
Match: A0A7S1TNE3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TNE3_9RHOD) HSP 1 Score: 129 bits (323), Expect = 1.590e-30 Identity = 98/272 (36.03%), Postives = 141/272 (51.84%), Query Frame = 1
Query: 25 PRAAEKTVRLLEPGSALLARWLPVFFVPSLVVLPLS--PIPTSLNALKLLLVVCGGWFLSLTSTAA---VVTALSPSARPG--DAVDAPVTAPSKPAPPPVFRGSVVRGLGVCAAVAGLLAVAGAGASPGQAAPSAVPAVLAKLSKPAAQLSLLLATLFGFSAGTRVPRRVSKAVHPVVTCAAVTMAAAAAIGKGVGLSFFDVLRSYLTRSRCPVHLGAGDLLLGLLGPSVLSFAVQMYRRRSLIFKNAKQVAGGSLFCASSGLFGTALVSR 819
P AA+K +PG A L++WL VFFVP L+VLPL+ P P + + L+++ V+ + LSLT +AA ++ ++ SA D V AP + PP R +++ L G+G A+ A + TLFGF G R+P +AVHP++T + A A + G+ F DVL YLT+ RC LG GDLL+ +LG ++LSFA Q+Y RR LI ++A +V G + + LFGTAL SR
Sbjct: 117 PDAADKLAAFFQPGVAFLSKWLAVFFVPVLIVLPLTARPYPPARDLLRIVSVIFSTFVLSLTGSAAFSQLIRRVTRSAESAAIDTTSNAVRAPKPTSAPPPRRSTMLFWL---------FGALGSGCG----------ALCAPHVQQFRAALTTCTTLFGFCLGQRMPAAFKRAVHPLLTTIGTVLTAMFAFAQMSGIRFLDVLAEYLTKGRCGSCLGGGDLLMNVLGAAILSFAFQIYARRRLIREHAMEVFGTTTTASILSLFGTALASR 369
BLAST of mRNA_H-canaliculatus_F_contig12722.2271.1 vs. uniprot
Match: A0A4D9CWJ8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWJ8_9STRA) HSP 1 Score: 130 bits (326), Expect = 2.310e-30 Identity = 104/272 (38.24%), Postives = 158/272 (58.09%), Query Frame = 1
Query: 49 RLLEPGSALLARWLPVFFVPSLVVLPLSP--IPTSLNALKLLLVVCGGWFLSLTSTAAVVTALSPSARPGDAVDAPVTAP-------SKPAPPPVFRGSVVRGLGVCAAVAGLLAV------AGAGASPGQAAPSAVPAVLAKLSKPAAQLSLLLATLFGFSAGTRVPRRVSKAVHPVVTCAAVTMAAAAAIGKGVGLSFFDVLRSYLTRSRCPVHLGAGDLLLGLLGPSVLSFAVQMYRRRSLIFKNAKQVAGGSLFCASSGLFGTALVSR 819
R+L+PG+ LL RWL VFFVP+LV+LPLS + SL AL+L V+ G+ SL +TA + L+ ++ AV +P S P F S+ + L + AV+G +V A +G+S +L L++ L LAT+ + G+R+P ++ KAVHP+++CA +T+A + + +G S L +Y++R+ CP+HLG GDLLLGLLGPS+L+ AVQMY RR+L+ +N ++ G L + GLF +A +SR
Sbjct: 599 RVLKPGTDLLTRWLAVFFVPTLVLLPLSAGSLAPSL-ALRLGAVLVLGFEASLWTTAELADLLT--SKNDVAVSSPXXXXXXXXXXFSTTKTP--FSHSLHKALAISTAVSGAASVLLSARLAASGSS-----------LLPSLAR---TLFTFLATILSYVTGSRLPLKLRKAVHPLLSCAGLTLALLSLHARLLGQSLTHQLHAYVSRAPCPLHLGGGDLLLGLLGPSILAMAVQMYERRALLKQNLSKILGTCLGASVFGLFSSAALSR 851
BLAST of mRNA_H-canaliculatus_F_contig12722.2271.1 vs. uniprot
Match: A0A1Z5JZL6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZL6_FISSO) HSP 1 Score: 127 bits (320), Expect = 3.670e-30 Identity = 98/279 (35.13%), Postives = 143/279 (51.25%), Query Frame = 1
Query: 25 PRAAEKTVRLLEPGSALLARWLPVFFVPSLVVLPLSP-IPTSLNALKLLLVVCGGWFLSLTSTAAVVTALSPSARPGDAVDAPV-------------TAPSKPAPPPVFRGSVVRGLGVCAAVAGLLAVAGAGASPGQAAPSAVPAVLAKLSKPAAQLSLLLATLFGFSAGTRVPRRVSKAVHPVVTCAAVTMAAAAAIGKGVGLSFFDVLRSYLTRSRCPVHLGAGDLLLGLLGPSVLSFAVQMYRRRSLIFKNAKQVAGGSLFCASSGLFGTALVSR 819
P+A+ L PG+ALLA+WLPVFFVPSL+ LPL+ I TS +K++ +V GG+F +L S A V A+ + V A + T P KP F + +G+ GLL +A A + L++ ++ L LL TL F G R+P++++ +HP++ C + T A A+ G SF +L+SY T S GAGD+LL LLGP+V+S A+ MY +R L+ N +V GL+GTAL+ R
Sbjct: 111 PKASSFLYEKLTPGAALLAKWLPVFFVPSLITLPLADSIGTSAELIKVVGIVIGGFFFTLLSAAFSVIAVRKAMGNESPVKAEIEDLTSKATQNVMNTVPLKPFSDECFHALTLTSVGL-----GLLTLASKFAG------------ITVLARQSSALFLLATTLSTFVYGARLPKKLTTIIHPLLVCTSFTWVVARALAAATGQSFRSILKSYRTGSLGLKTSGAGDILLFLLGPAVISLAISMYEKRKLMRDNLAEVGTAVGVSTFGGLYGTALLVR 372 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12722.2271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12722.2271.1 >prot_H-canaliculatus_F_contig12722.2271.1 ID=prot_H-canaliculatus_F_contig12722.2271.1|Name=mRNA_H-canaliculatus_F_contig12722.2271.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=274bp LVILERALPRAAEKTVRLLEPGSALLARWLPVFFVPSLVVLPLSPIPTSLback to top mRNA from alignment at H-canaliculatus_F_contig12722:353..3100+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12722.2271.1 ID=mRNA_H-canaliculatus_F_contig12722.2271.1|Name=mRNA_H-canaliculatus_F_contig12722.2271.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2748bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12722:353..3100+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12722:353..3100+ >mRNA_H-canaliculatus_F_contig12722.2271.1 ID=mRNA_H-canaliculatus_F_contig12722.2271.1|Name=mRNA_H-canaliculatus_F_contig12722.2271.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1644bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12722:353..3100+ (Hapterophycus canaliculatus Oshoro5f female)back to top |