mRNA_H-canaliculatus_F_contig12721.2270.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12721.2270.1
Unique NamemRNA_H-canaliculatus_F_contig12721.2270.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12721.2270.1 vs. uniprot
Match: D8LHG5_ECTSI (DNA primase large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG5_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 1.280e-125
Identity = 172/183 (93.99%), Postives = 179/183 (97.81%), Query Frame = 1 
Query:    1 QRSMPLCMKQLHTALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQAMFTKIMGVDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGCPYRHYDEDHLSNLLSQVRIGGADKDAILRQVKSKNYQLACQRHFEITHKGHESTGVSTDGVGNHPNAWMHASMEFHKEKA 549
            +RSMPLCMKQLH+ALNREHKLKHWGRLQYGLFLKGAGL VDDAMAFWQAMFTKIMG+DQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGCPYRHYDEDHLS+LLSQVRIG  DKDAILRQVKSKNYQLACQRHFE THKG+E++GVSTDGVGNHPNAWMHASMEFHKEKA
Sbjct:  282 ERSMPLCMKQLHSALNREHKLKHWGRLQYGLFLKGAGLSVDDAMAFWQAMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGCPYRHYDEDHLSSLLSQVRIGATDKDAILRQVKSKNYQLACQRHFEATHKGYEASGVSTDGVGNHPNAWMHASMEFHKEKA 464
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BLAST of mRNA_H-canaliculatus_F_contig12721.2270.1 vs. uniprot
Match: A0A835YS26_9STRA (DNA primase large subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS26_9STRA)

HSP 1 Score: 290 bits (743), Expect = 2.990e-92
Identity = 130/181 (71.82%), Postives = 149/181 (82.32%), Query Frame = 1 
Query:    4 RSMPLCMKQLHTALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQAMFTKIMGVDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGCPYRHYDEDHLSNLLSQVRIGGADKDAILRQVKSKNYQLACQRHFEITHKGHESTGVSTDGVGNHPNAWMHASMEFHKEK 546
            RSMPLCM+ LH AL R+HKLKH GRLQYGLFLKGAGL ++DA AFWQ+ FT++M VD F K YAYNVRHMYGKEGKRTNYTPYSCLKIIMG  P AG+HHGCPYRH+DE HLS L  Q+++  AD+DA+   VK +NYQLACQRHFE TH+G+E  GVS DGVGNHPNAW  ASM++ K K
Sbjct:  280 RSMPLCMRGLHLALRRDHKLKHMGRLQYGLFLKGAGLSMEDAAAFWQSEFTRVMSVDAFTKGYAYNVRHMYGKEGKRTNYTPYSCLKIIMGAAPGAGEHHGCPYRHFDESHLSALFGQLKLERADRDAMAAHVKGRNYQLACQRHFEATHRGYEDAGVSADGVGNHPNAWTAASMQYWKAK 460
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BLAST of mRNA_H-canaliculatus_F_contig12721.2270.1 vs. uniprot
Match: F0YER9_AURAN (DNA primase large subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YER9_AURAN)

HSP 1 Score: 256 bits (653), Expect = 5.870e-79
Identity = 113/179 (63.13%), Postives = 134/179 (74.86%), Query Frame = 1 
Query:    7 SMPLCMKQLHTALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQAMFTKIMGVDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGCPYRHYDEDHLSNLLSQVRIGGADKDAILRQVKSKNYQLACQRHFEITHKGHESTGVSTDGVGNHPNAWMHASMEFHKE 543
            SMPLCM+QLH AL R+HKLKHWGR QYGLFLK AGL ++D + F+QA FTKIM VD F K+YAYN+RH YGKEGKRT Y+PY C K+IM   P  G++HGCPY+HYD+DHL+++L  + I      AIL Q KSKNYQLACQ+HFE+TH          DGVGNHPNAW  AS  +HKE
Sbjct:  277 SMPLCMQQLHGALKRDHKLKHWGRQQYGLFLKAAGLSMEDQLRFFQAEFTKIMTVDAFSKEYAYNIRHRYGKEGKRTEYSPYGCYKLIMDMAPGPGEYHGCPYKHYDDDHLASILGAMDISRESSQAILGQAKSKNYQLACQKHFEVTHPKAAGVAARPDGVGNHPNAWFKASRIYHKE 455
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BLAST of mRNA_H-canaliculatus_F_contig12721.2270.1 vs. uniprot
Match: A0A7S2UM83_9STRA (DNA primase large subunit n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UM83_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.510e-77
Identity = 112/183 (61.20%), Postives = 143/183 (78.14%), Query Frame = 1 
Query:    7 SMPLCMKQLHTALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQAMFTKIMGVDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGCPYRHYDEDHLSNLLSQVRIGG-ADKDAILRQVKSKNYQLACQRHFEITHKGHEST-GVSTDGVGNHPNAWMHASMEFHKEKA 549
            SMPLCM QLH+ L ++HKLKHWGRLQYGLFLKGAG+ +++++ F+Q  F KI+  +QF K Y+YN+RHMYGKEGKR +YTPY+C KII+GNPP +GDHHGCPYRHYD+ HLS+LL+++ IG  AD+DAI+   K++N QLAC RHFE  H    S  GV+ D VGNHPNAW   S+ +H  K+
Sbjct:  300 SMPLCMSQLHSGLQQDHKLKHWGRLQYGLFLKGAGMTMEESLMFFQREFGKIITAEQFNKNYSYNIRHMYGKEGKRASYTPYNCTKIILGNPPQSGDHHGCPYRHYDDTHLSSLLTKMNIGTPADRDAIMSHKKAQNPQLACVRHFEAVHPAATSVKGVTLDNVGNHPNAWFAGSVSYHAAKS 482
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BLAST of mRNA_H-canaliculatus_F_contig12721.2270.1 vs. uniprot
Match: W7TRK8_9STRA (DNA primase large subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRK8_9STRA)

HSP 1 Score: 250 bits (638), Expect = 2.210e-76
Identity = 111/181 (61.33%), Postives = 141/181 (77.90%), Query Frame = 1 
Query:    4 RSMPLCMKQLHTALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQAMFTKIMGVDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGCPYRHYDEDHLSNLLSQVRIGGADKDAILRQVKSKNYQLACQRHFEITHKGHESTGVSTDGVGNHPNAWMHASMEFHKEK 546
            RSMP+CM+ LH  L  EHKLKHWGRLQYGLFLKGAG+G++DA+ FW+  FTKIM  D F KQYAY++RH +GKEGKR +YTP++C KII+G  P  G+ HGCP+RHYDE +L+ LL +  +G  D+D +++  K ++YQLAC +HFE THKG ES  +S DGVGNHPNA+  ASM F+KEK
Sbjct:  285 RSMPMCMRVLHKNLRLEHKLKHWGRLQYGLFLKGAGIGMEDAIQFWEKEFTKIMTTDVFNKQYAYSIRHYFGKEGKRKDYTPFNCSKIILGPGPGHGEFHGCPFRHYDEANLNKLLERAGVGAMDRDEMIKLSKGQHYQLACMKHFETTHKGAESL-ISMDGVGNHPNAFFAASMAFYKEK 464
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BLAST of mRNA_H-canaliculatus_F_contig12721.2270.1 vs. uniprot
Match: A0A7S1ZF14_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZF14_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.490e-75
Identity = 109/182 (59.89%), Postives = 143/182 (78.57%), Query Frame = 1 
Query:    7 SMPLCMKQLHTALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQAMFTKIMGVDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGCPYRHYDEDHLSNLLSQVRIGGA-DKDAILRQVKSKNYQLACQRHFEITHKGHEST-GVSTDGVGNHPNAWMHASMEFHKEK 546
            SMPLCM QLH  + R+ KLKH GRLQYGLFLKG G+  ++ +AF+Q +FTKIM  +QF K Y+YN+RHM+G+EGKR +Y+PYSC+KII+GNPP  G+ HGCP+RHYD+  LS+LL+++ +G A D+ AIL Q K++NYQLAC +HFE+ H G  S  G+S +GVGNHPNAW  AS+ +HK K
Sbjct:  312 SMPLCMSQLHAGMKRDSKLKHQGRLQYGLFLKGGGMSTEEHLAFFQRVFTKIMTTEQFNKNYSYNIRHMHGQEGKRASYSPYSCMKIILGNPPQGGESHGCPFRHYDDSSLSSLLTKLNVGSASDRSAILAQKKARNYQLACAKHFEVMHPGAASVEGLSMNGVGNHPNAWFAASVGYHKAK 493
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BLAST of mRNA_H-canaliculatus_F_contig12721.2270.1 vs. uniprot
Match: K0RJG2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RJG2_THAOC)

HSP 1 Score: 243 bits (621), Expect = 7.250e-75
Identity = 109/184 (59.24%), Postives = 146/184 (79.35%), Query Frame = 1 
Query:    7 SMPLCMKQLHTALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQAMFTKIMGVDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAG-DHHGCPYRHYDEDHLSNLLSQVRIG-GADKDAILRQVKSKNYQLACQRHFEITHK-GHESTGVSTDGVGNHPNAWMHASMEFHKEKA 549
            SMPLCM+QLHT L R+HKLKH GRLQ+GLFLKG+G+ +++   F+Q  FT+IM  +QF KQY+Y++RHM+GKEGKR +YTPY+C+KIIMGNPP +G +HHGCPY+HYD+ +LS LL +++IG  AD+DAI+R  K  N+QLAC + FE+ H       GV+ DGVGNHPNAW +AS+ +H+ K+
Sbjct:  225 SMPLCMQQLHTGLKRDHKLKHQGRLQFGLFLKGSGMSLEEHTLFFQREFTRIMTSEQFNKQYSYSIRHMHGKEGKRASYTPYNCMKIIMGNPPQSGVEHHGCPYKHYDDQNLSALLGKLKIGDSADRDAIMRLKKEGNFQLACAKQFEVQHPLASTVAGVNMDGVGNHPNAWFNASVSYHQAKS 408
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BLAST of mRNA_H-canaliculatus_F_contig12721.2270.1 vs. uniprot
Match: A0A7S3H234_9STRA (DNA primase large subunit n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H234_9STRA)

HSP 1 Score: 244 bits (624), Expect = 2.160e-74
Identity = 108/181 (59.67%), Postives = 132/181 (72.93%), Query Frame = 1 
Query:    7 SMPLCMKQLHTALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQAMFTKIMGVDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGCPYRHYDEDHLSNLLSQVRIGGADKDAILRQVKSKNYQLACQRHFEITHKGH-ESTGVSTDGVGNHPNAWMHASMEFHKEK 546
            +MPLCMK LH+ L REHKLKHWGRLQYGLFLKGAGL ++ A  FW++ FTK++  DQF K YAY+ RHMYGKEG R NYTPYSC+KIIMG PP  G  HGCPYRH  ++ LS+LLS +++   D   I    KS NYQ+ACQRHF++TH GH  +  + +D V NHPN W   S+ +HK K
Sbjct:  281 NMPLCMKNLHSNLKREHKLKHWGRLQYGLFLKGAGLDLEGAQQFWESHFTKLISHDQFVKSYAYSFRHMYGKEGARKNYTPYSCMKIIMGTPPETGAFHGCPYRHMPDNQLSSLLSSLKLSTPDVSEIAALAKSSNYQIACQRHFDVTHPGHLNNPELKSDAVANHPNLWFQTSVNYHKLK 461
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BLAST of mRNA_H-canaliculatus_F_contig12721.2270.1 vs. uniprot
Match: A0A7S4A6J1_9STRA (DNA primase large subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6J1_9STRA)

HSP 1 Score: 243 bits (621), Expect = 4.590e-74
Identity = 106/183 (57.92%), Postives = 134/183 (73.22%), Query Frame = 1 
Query:    7 SMPLCMKQLHTALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQAMFTKIMGVDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGCPYRHYDEDHLSNLLSQVRIGGADKDAILRQVKSKNYQLACQRHFEITHKGHESTG----VSTDGVGNHPNAWMHASMEFHKE 543
            SMPLCM+QLH AL R+HKLKHWGR QYGLFLK AGL ++D + F+QA FTKIM  DQF K+YAYN+RH YGKEGKRT Y+PY C K++M   P  G++HGCPYRH+D DHL+ +LS+  +   ++  +L + K +NYQ+ACQRHFE  HK     G     + DGVGNHPNAW  AS  +H++
Sbjct:  276 SMPLCMQQLHYALKRDHKLKHWGRQQYGLFLKAAGLSMEDQLRFFQAEFTKIMTHDQFSKEYAYNIRHRYGKEGKRTEYSPYGCYKLVMDMAPGPGEYHGCPYRHFDADHLAAVLSKTSLDAGEQSLVLGKAKERNYQIACQRHFEFAHKKQTVNGKKVVANLDGVGNHPNAWFKASRVYHQD 458
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12721.2270.1 vs. uniprot
Match: B8CCN9_THAPS (DNA primase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCN9_THAPS)

HSP 1 Score: 239 bits (611), Expect = 3.170e-73
Identity = 109/176 (61.93%), Postives = 137/176 (77.84%), Query Frame = 1 
Query:    7 SMPLCMKQLHTALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQAMFTKIMGVDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAG-DHHGCPYRHYDEDHLSNLLSQVRIGG-ADKDAILRQVKSKNYQLACQRHFEITHKGHEST-GVSTDGVGNHPNAWMHAS 525
            SMPLCM+QLH  L R+HKLKH GRLQYGLFLKGAG+ +++ M F+Q  FTKIM  +QF K YAYN+RH +GKEGKR  YTPY+C+KII GNPP  G +HHGCPY+HYD+ +LS LL++++IGG +D+DAI+   K  N+QLAC +HFE+ H    S  G++ DGVGNHPNAW  AS
Sbjct:  261 SMPLCMQQLHVGLKRDHKLKHQGRLQYGLFLKGAGMPMEEHMLFFQREFTKIMTSEQFNKNYAYNIRHTHGKEGKRATYTPYNCMKIIFGNPPQTGVEHHGCPYKHYDDQNLSALLTKLKIGGLSDRDAIMAHKKEGNFQLACTKHFEVMHPAATSVEGINLDGVGNHPNAWFSAS 436
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12721.2270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHG5_ECTSI1.280e-12593.99DNA primase large subunit n=2 Tax=Ectocarpus TaxID... [more]
A0A835YS26_9STRA2.990e-9271.82DNA primase large subunit n=1 Tax=Tribonema minus ... [more]
F0YER9_AURAN5.870e-7963.13DNA primase large subunit n=1 Tax=Aureococcus anop... [more]
A0A7S2UM83_9STRA1.510e-7761.20DNA primase large subunit n=2 Tax=Attheya septentr... [more]
W7TRK8_9STRA2.210e-7661.33DNA primase large subunit n=2 Tax=Monodopsidaceae ... [more]
A0A7S1ZF14_9STRA1.490e-7559.89Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0RJG2_THAOC7.250e-7559.24Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3H234_9STRA2.160e-7459.67DNA primase large subunit n=2 Tax=Spumella elongat... [more]
A0A7S4A6J1_9STRA4.590e-7457.92DNA primase large subunit n=1 Tax=Pelagomonas calc... [more]
B8CCN9_THAPS3.170e-7361.93DNA primase (Fragment) n=1 Tax=Thalassiosira pseud... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12721contigH-canaliculatus_F_contig12721:108..3499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score374.4
Seed ortholog evalue4.2e-101
Seed eggNOG ortholog2880.D8LHG5
Preferred namePRIM2
KEGG rclassRC00151,RC02795
KEGG koko:K01101,ko:K02685
KEGG ReactionR00375,R00376,R00377,R00378,R03024
KEGG Pathwayko00230,ko00240,ko00627,ko01100,ko01120,ko03030,map00230,map00240,map00627,map01100,map01120,map03030
KEGG ModuleM00261
GOsGO:0000082,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0001654,GO:0001745,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019725,GO:0022402,GO:0022616,GO:0030880,GO:0030894,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050896,GO:0051276,GO:0051716,GO:0055029,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090596,GO:0097159,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902295,GO:1902318,GO:1902494,GO:1902969,GO:1902981,GO:1903047,GO:1990234
EggNOG free text desc.DNA primase activity
EggNOG OGsCOG2219@1,KOG2267@2759
EC3.1.3.41
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Hectar predicted targeting categoryother localisation
Exons5
Model size836
Cds size753
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.6207337-UTR-H-canaliculatus_F_contig12721:107..1161622928993.6207337-UTR-H-canaliculatus_F_contig12721:107..116Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12721 108..116 +
1696845642.220668-UTR-H-canaliculatus_F_contig12721:107..1161696845642.220668-UTR-H-canaliculatus_F_contig12721:107..116Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12721 108..116 +
1622928993.7179985-UTR-H-canaliculatus_F_contig12721:3425..34991622928993.7179985-UTR-H-canaliculatus_F_contig12721:3425..3499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12721 3426..3499 +
1696845642.2784922-UTR-H-canaliculatus_F_contig12721:3425..34991696845642.2784922-UTR-H-canaliculatus_F_contig12721:3425..3499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12721 3426..3499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.633118-CDS-H-canaliculatus_F_contig12721:116..2511622928993.633118-CDS-H-canaliculatus_F_contig12721:116..251Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12721 117..251 +
1696845642.2324224-CDS-H-canaliculatus_F_contig12721:116..2511696845642.2324224-CDS-H-canaliculatus_F_contig12721:116..251Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12721 117..251 +
1622928993.646376-CDS-H-canaliculatus_F_contig12721:902..10121622928993.646376-CDS-H-canaliculatus_F_contig12721:902..1012Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12721 903..1012 +
1696845642.242026-CDS-H-canaliculatus_F_contig12721:902..10121696845642.242026-CDS-H-canaliculatus_F_contig12721:902..1012Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12721 903..1012 +
1622928993.6665373-CDS-H-canaliculatus_F_contig12721:1607..17101622928993.6665373-CDS-H-canaliculatus_F_contig12721:1607..1710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12721 1608..1710 +
1696845642.2515123-CDS-H-canaliculatus_F_contig12721:1607..17101696845642.2515123-CDS-H-canaliculatus_F_contig12721:1607..1710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12721 1608..1710 +
1622928993.683775-CDS-H-canaliculatus_F_contig12721:2333..25221622928993.683775-CDS-H-canaliculatus_F_contig12721:2333..2522Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12721 2334..2522 +
1696845642.260883-CDS-H-canaliculatus_F_contig12721:2333..25221696845642.260883-CDS-H-canaliculatus_F_contig12721:2333..2522Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12721 2334..2522 +
1622928993.6981454-CDS-H-canaliculatus_F_contig12721:3209..34251622928993.6981454-CDS-H-canaliculatus_F_contig12721:3209..3425Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12721 3210..3425 +
1696845642.2698236-CDS-H-canaliculatus_F_contig12721:3209..34251696845642.2698236-CDS-H-canaliculatus_F_contig12721:3209..3425Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12721 3210..3425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12721.2270.1prot_H-canaliculatus_F_contig12721.2270.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12721 117..3425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12721.2270.1

>prot_H-canaliculatus_F_contig12721.2270.1 ID=prot_H-canaliculatus_F_contig12721.2270.1|Name=mRNA_H-canaliculatus_F_contig12721.2270.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=251bp
MPLCMKQLHTALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQAMFTK
IMGVDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGC
PYRHYDEDHLSNLLSQVRIGGADKDAILRQVKSKNYQLACQRHFEITHKG
HESTGVSTDGVGNHPNAWMHASMEFHKEKAAAAAAGGAGAAGGAQSSPER
KAIGGEAAGSSSAAVVPASPSPSSSSLLSSGVAARVPPSAGGSKSSQSPP
*
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mRNA from alignment at H-canaliculatus_F_contig12721:108..3499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12721.2270.1 ID=mRNA_H-canaliculatus_F_contig12721.2270.1|Name=mRNA_H-canaliculatus_F_contig12721.2270.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3392bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12721:108..3499+ (Hapterophycus canaliculatus Oshoro5f female)
CAGAGATCGATGCCTCTGTGCATGAAGCAGCTGCACACGGCGTTGAATCG
CGAGCATAAGCTCAAGCACTGGGGTCGGCTCCAGTACGGGCTGTTCCTCA
AGGGAGCCGGCTTGGGAGTCGACGACGCGATGGCGTTCTGGCAGGTGAAC
TTGATCTACTCCGTGCTGCTTCAGTCTGGTGCTCACCAGCGTCCCGAGTA
GGTCCGTGCACGACGAAAAAAATCAAGCGACGCCGAGATCTGCGTAGACC
TCGCGGCGCTGGCTCGTTCGAAAGGATCCGCAACGATGCACTCATGCTTC
CAGGTGTGCGCCTTTTCCTTGTGTCTGGTTTGCACAACTGCGCCGCCCGC
TTTCACGTTTCTTGGAGGCAGCCTGACGGACATAGCCACCTCCTTGCCCT
CTCCCGGTCACCCGCCGATGCTGCCAGACCCACGTACGCCTGCCGTAGAT
TGCAGAAGATTCCCAGACCCCCTTTGTCGCCGATTTTCGAAGCTGGATAC
CTGCGCGGCAGCCGAGGCGATTGCTCCGAACAGAACGTCGTTCGAAAGAT
GTCCTGGAGAACTCTGCAACGCCGCATCCATCGGTGTAGGAAACCCCCCT
ACCTACCGTCGGGGCACTGAGCTTTGACGATTTTTCCCAGGGGGGGGGGG
GGAGGTTGATGTCTCAAGCAGCCTGCACATCTTACCACGAGACGCGGCTT
ATGCGGAGCCCCCTTTTCTCTCCCCTTGCCTGCTTTTTTCCTCCCCGAAC
CGCGGTGCGGTTGGCGCGTACACCCACGGCGTCGGCGTGCCGCAGGCGAT
GTTTACGAAGATCATGGGGGTGGACCAGTTCCAGAAACAGTACGCGTACA
ACGTCCGGCACATGTACGGGAAGGAGGGCAAGCGAACAAACTACACCCCG
TATAGGTGAGAGGTGGGCAGGCCGCCCGTCGGGGATTCGGGGGGAGGAGG
GAGCGACAAGTTGGCGGTCGACAAGGGCAGGCAGGAGAAGAAGGTCGAAG
AGCACGTGTCTGCCACGCTAGCGCGGGCCGCTTGGAGCACAGTTTTGTGC
GAGCTGCGGGCAGGCGCTTGGCCGGGAGGCGAAGATGTACCGCGGATGTG
TGCGTGTTGTTCTGCAATGCATCCATGCATGAGGTGGAACATCGATGGCA
ACCGTCGCGCGCAGTGAGACGGTAGAGACTATGGACAGCGCGAAGACACT
CGCTCTCCCGAAACAATCGCCGTAAACTGGAGATGATGCGCAAAAAACAT
ACTACTCCCAGCTACAACATCCTTTTGATTCTCGCCTGTTTCTCTGGAGT
CGGACGCGACTTCTCGTATGCGTCCCCACAAAGCTAAAAAAAAATTTCTC
CAACCTGTTTTTGGACAACAACAAGTAGAGTCGTAACCCCAACCAACGGC
CCTAACCAATCGAACAGCAACAGCGCCTTCTCCTCCCGATCCTTCGTGGA
TCATTTCCCAGCAACGACACACCGACTACAGCCCGCCCTTTACTTTGCAG
TTGCCTGAAGATCATCATGGGTAACCCTCCGGCAGCGGGCGACCACCACG
GCTGCCCCTACCGACACTACGATGAAGATCACCTCTCCAACCTGCTCTCT
CAGGTAAAAAAGAAAAATTCGGTTTCACCCTTTCGATGCCCCAACCCCGC
TACACGTGCGCACCTCCTTCCACCGAAGGTTTCCGTTCGATCCCCAGGAG
CAGGTTTCCTCTTGGAACAGCTGGACCTCAGGTTGGCCCCGCCATGGCAG
CCAATCAATTTTCTCCCGCCGTCGCGGTCTTTCCGAGTAGATTTTTTGCG
GCGCTTCTCTACCCCCCTTGGCACCGGAGCCATCTGTGTTTGGATATGTG
GTCCTCTTGTATCTCCGCCGGCACAAGACAGATCCACGAAGTATCATGGC
AATAAGCATGGCAATGGATAGCGAGGCCCCACGGATGAAGGGCTCCTTTG
CCGTTGATGGTTGGGTAAAAGAAACCGACTCAGGTGTTGCTTCCTCGGCT
ACGTCAGCTCTTCTCCGTCTTAGGAACGCACCCCGTAAGCATGGCGCAGC
ATCTAACGTGCCCCTGCGGCGACAAAAACAGCCTGTTGACAAACACACAC
GCACACAAGGCAAGGCAAGGCAAGGCAAGGCAAGGCAAGGCAAGGCAAAG
CAAAGCAAAGCAAAGAGAGTCCTCTAAACCGACCGTGATTTTGTTTTGCA
CGCCGGGCGACCGCGCGCTCACGCAGGTCCGCATCGGGGGGGCCGATAAA
GACGCCATCCTCCGTCAGGTCAAGTCCAAGAACTACCAGCTCGCGTGCCA
AAGACACTTCGAGATCACGCACAAGGGCCACGAGTCAACCGGAGTCAGCA
CCGACGGTGTGGGAAACCACCCAAACGCCTGGATGCACGCCTCCATGGAG
TTCCACAAGGAAAAGGTGCGCGGAGCGTGGGCGTGCGGGAGGGGAAGGAG
CCGGCGGGGCCTTCGTGTATGTCGGTTTGCTTTTGCCCGATCGTTAGCTG
GCGTGCGTGGTTGGAACTTCGCTTGCTGGCTTGCTCTTGCTGTGTGCAGT
TTGTGTTGTGTTCTTCAGGCGGAAGGGGAGGGATGAGTTCACGCGTGTGC
GTGCGTGCGCCCTTGATCATGGTCATGCACGCCGAAAAAGTATGTTGGTC
GTCTACCCTGCAATGAAACCGTTGGACACGGAGCGGAGCGGAAGGGAGAT
GCCACCACCTTCCTTTTTGTTGTTGGTCCCTTTCTCACTTTTGATTCGGC
GTTGTTTTTGATACCAAGCGCGTCTGCCGTGCATGCATATGTCAAACGGG
TGCGGCGTGTGGTTGGGATGCCATCAAAATCGCATGAGCGACATCTTGCG
GGGGCAGCAGCGCGCCAATAGGACGGGGCGAAATTTGAAATTTGCACGGA
GCGGAAACCTCCCAAACTTTTCTCTACCGCTAAATTTAAAATTTGCACGG
GGCGGAAACTTCCCAAACTTTTCTCTGCCGCTCCCCGGACCTGATCGCTC
TTTTTTTCGCCTGACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCT
CCTCCTCCCTCGACTCTCGCGCGCTGAACCTGATTGCCATGCAACCAACC
AGGCCGCCGCCGCCGCCGCCGGAGGTGCGGGGGCGGCAGGTGGTGCCCAA
AGCAGCCCGGAGAGGAAGGCCATCGGAGGAGAAGCAGCGGGATCGTCCTC
GGCCGCCGTTGTGCCAGCGTCGCCGTCACCGTCGTCGTCGTCGTTGTTGT
CGTCCGGGGTAGCGGCGCGAGTACCGCCGAGCGCCGGAGGATCGAAGTCG
TCGCAGTCTCCGCCTTGATGGTGGTTCCTGGTTGTTGCCTTTTCATTTTC
ATTTCATTTTCATTTCGGTTCGGGGGCGGTGCTCGTCCCTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12721:108..3499+

>mRNA_H-canaliculatus_F_contig12721.2270.1 ID=mRNA_H-canaliculatus_F_contig12721.2270.1|Name=mRNA_H-canaliculatus_F_contig12721.2270.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12721:108..3499+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTCTGTGCATGAAGCAGCTGCACACGGCGTTGAATCGCGAGCATAA
GCTCAAGCACTGGGGTCGGCTCCAGTACGGGCTGTTCCTCAAGGGAGCCG
GCTTGGGAGTCGACGACGCGATGGCGTTCTGGCAGATGCCTCTGTGCATG
AAGCAGCTGCACACGGCGTTGAATCGCGAGCATAAGCTCAAGCACTGGGG
TCGGCTCCAGTACGGGCTGTTCCTCAAGGGAGCCGGCTTGGGAGTCGACG
ACGCGATGGCGTTCTGGCAGGCGATGTTTACGAAGATCATGGGGGTGGAC
CAGTTCCAGAAACAGTACGCGTACAACGTCCGGCACATGTACGGGAAGGA
GGGCAAGCGAACAAACTACACCCCGTATAGGCGATGTTTACGAAGATCAT
GGGGGTGGACCAGTTCCAGAAACAGTACGCGTACAACGTCCGGCACATGT
ACGGGAAGGAGGGCAAGCGAACAAACTACACCCCGTATAGTTGCCTGAAG
ATCATCATGGGTAACCCTCCGGCAGCGGGCGACCACCACGGCTGCCCCTA
CCGACACTACGATGAAGATCACCTCTCCAACCTGCTCTCTCAGTTGCCTG
AAGATCATCATGGGTAACCCTCCGGCAGCGGGCGACCACCACGGCTGCCC
CTACCGACACTACGATGAAGATCACCTCTCCAACCTGCTCTCTCAGGTCC
GCATCGGGGGGGCCGATAAAGACGCCATCCTCCGTCAGGTCAAGTCCAAG
AACTACCAGCTCGCGTGCCAAAGACACTTCGAGATCACGCACAAGGGCCA
CGAGTCAACCGGAGTCAGCACCGACGGTGTGGGAAACCACCCAAACGCCT
GGATGCACGCCTCCATGGAGTTCCACAAGGAAAAGGTCCGCATCGGGGGG
GCCGATAAAGACGCCATCCTCCGTCAGGTCAAGTCCAAGAACTACCAGCT
CGCGTGCCAAAGACACTTCGAGATCACGCACAAGGGCCACGAGTCAACCG
GAGTCAGCACCGACGGTGTGGGAAACCACCCAAACGCCTGGATGCACGCC
TCCATGGAGTTCCACAAGGAAAAGGCCGCCGCCGCCGCCGCCGGAGGTGC
GGGGGCGGCAGGTGGTGCCCAAAGCAGCCCGGAGAGGAAGGCCATCGGAG
GAGAAGCAGCGGGATCGTCCTCGGCCGCCGTTGTGCCAGCGTCGCCGTCA
CCGTCGTCGTCGTCGTTGTTGTCGTCCGGGGTAGCGGCGCGAGTACCGCC
GAGCGCCGGAGGATCGAAGTCGTCGCAGTCTCCGCCTTGAGCCGCCGCCG
CCGCCGCCGGAGGTGCGGGGGCGGCAGGTGGTGCCCAAAGCAGCCCGGAG
AGGAAGGCCATCGGAGGAGAAGCAGCGGGATCGTCCTCGGCCGCCGTTGT
GCCAGCGTCGCCGTCACCGTCGTCGTCGTCGTTGTTGTCGTCCGGGGTAG
CGGCGCGAGTACCGCCGAGCGCCGGAGGATCGAAGTCGTCGCAGTCTCCG
CCTTGA
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