mRNA_H-canaliculatus_F_contig1272.2268.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1272.2268.1
Unique NamemRNA_H-canaliculatus_F_contig1272.2268.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1272.2268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1272contigH-canaliculatus_F_contig1272:8970..9478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.2749827-CDS-H-canaliculatus_F_contig1272:8969..93411622928993.2749827-CDS-H-canaliculatus_F_contig1272:8969..9341Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1272 8970..9341 +
1696845642.0540547-CDS-H-canaliculatus_F_contig1272:8969..93411696845642.0540547-CDS-H-canaliculatus_F_contig1272:8969..9341Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1272 8970..9341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.2879577-UTR-H-canaliculatus_F_contig1272:9341..94781622928993.2879577-UTR-H-canaliculatus_F_contig1272:9341..9478Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1272 9342..9478 +
1696845642.0632179-UTR-H-canaliculatus_F_contig1272:9341..94781696845642.0632179-UTR-H-canaliculatus_F_contig1272:9341..9478Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1272 9342..9478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1272.2268.1prot_H-canaliculatus_F_contig1272.2268.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1272 8970..9341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1272.2268.1

>prot_H-canaliculatus_F_contig1272.2268.1 ID=prot_H-canaliculatus_F_contig1272.2268.1|Name=mRNA_H-canaliculatus_F_contig1272.2268.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
RPLETQGAAEKLRHRRGQRRRPGCGACRKQGDEKSRGSPPSASVVCARWL
VLHGIWWDAFSNVKAARLRGLCPLLRRRKPISGTYAGWKPSFAFNTCGIV
GKIKARETLLSSSSPGGARRGDG*
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mRNA from alignment at H-canaliculatus_F_contig1272:8970..9478+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1272.2268.1 ID=mRNA_H-canaliculatus_F_contig1272.2268.1|Name=mRNA_H-canaliculatus_F_contig1272.2268.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=509bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1272:8970..9478+ (Hapterophycus canaliculatus Oshoro5f female)
CGACCGCTAGAGACCCAAGGGGCCGCGGAAAAGTTGCGGCATAGGCGGGG
ACAGCGCCGCCGTCCGGGATGTGGGGCCTGCCGCAAGCAAGGGGACGAGA
AGAGTCGAGGCAGCCCACCATCGGCGTCTGTGGTGTGCGCCCGATGGCTT
GTCTTGCATGGAATATGGTGGGACGCATTCAGCAATGTCAAAGCGGCTCG
CCTGCGTGGCCTGTGCCCTCTGCTCAGAAGGCGGAAGCCCATCTCTGGTA
CCTATGCTGGATGGAAACCTTCATTTGCATTCAACACGTGCGGGATAGTG
GGGAAAATAAAAGCACGCGAAACACTGCTGTCCTCGAGTAGCCCAGGAGG
GGCGAGGCGTGGAGACGGATGAAACGCTGGAGTCTGTTCAACGCACTGCC
TGGAATCAGACGCGGAGAAAGCGTTTCGTAATACTTCACCGACTCACCTC
TATGCGTCCTCTTCACTACTCGGCCCAGCCCCTCCCACAGGCAATCCTGA
AAATCCTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1272:8970..9478+

>mRNA_H-canaliculatus_F_contig1272.2268.1 ID=mRNA_H-canaliculatus_F_contig1272.2268.1|Name=mRNA_H-canaliculatus_F_contig1272.2268.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1272:8970..9478+ (Hapterophycus canaliculatus Oshoro5f female)
CGACCGCTAGAGACCCAAGGGGCCGCGGAAAAGTTGCGGCATAGGCGGGG
ACAGCGCCGCCGTCCGGGATGTGGGGCCTGCCGCAAGCAAGGGGACGAGA
AGAGTCGAGGCAGCCCACCATCGGCGTCTGTGGTGTGCGCCCGATGGCTT
GTCTTGCATGGAATATGGTGGGACGCATTCAGCAATGTCAAAGCGGCTCG
CCTGCGTGGCCTGTGCCCTCTGCTCAGAAGGCGGAAGCCCATCTCTGGTA
CCTATGCTGGATGGAAACCTTCATTTGCATTCAACACGTGCGGGATAGTG
GGGAAAATAAAAGCACGCGAAACACTGCTGTCCTCGAGTAGCCCAGGAGG
GGCGAGGCGTGGAGACGGATGACGACCGCTAGAGACCCAAGGGGCCGCGG
AAAAGTTGCGGCATAGGCGGGGACAGCGCCGCCGTCCGGGATGTGGGGCC
TGCCGCAAGCAAGGGGACGAGAAGAGTCGAGGCAGCCCACCATCGGCGTC
TGTGGTGTGCGCCCGATGGCTTGTCTTGCATGGAATATGGTGGGACGCAT
TCAGCAATGTCAAAGCGGCTCGCCTGCGTGGCCTGTGCCCTCTGCTCAGA
AGGCGGAAGCCCATCTCTGGTACCTATGCTGGATGGAAACCTTCATTTGC
ATTCAACACGTGCGGGATAGTGGGGAAAATAAAAGCACGCGAAACACTGC
TGTCCTCGAGTAGCCCAGGAGGGGCGAGGCGTGGAGACGGATGA
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