mRNA_H-canaliculatus_F_contig12616.2196.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12616.2196.1
Unique NamemRNA_H-canaliculatus_F_contig12616.2196.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12616.2196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12616contigH-canaliculatus_F_contig12616:1032..3403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1058
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12616.2196.1prot_H-canaliculatus_F_contig12616.2196.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12616 2965..3393 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928981.9046984-UTR-H-canaliculatus_F_contig12616:1031..16491622928981.9046984-UTR-H-canaliculatus_F_contig12616:1031..1649Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12616 1032..1649 -
1696845637.7171192-UTR-H-canaliculatus_F_contig12616:1031..16491696845637.7171192-UTR-H-canaliculatus_F_contig12616:1031..1649Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12616 1032..1649 -
1622928981.9388907-UTR-H-canaliculatus_F_contig12616:2963..29641622928981.9388907-UTR-H-canaliculatus_F_contig12616:2963..2964Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12616 2964..2964 -
1696845637.7306309-UTR-H-canaliculatus_F_contig12616:2963..29641696845637.7306309-UTR-H-canaliculatus_F_contig12616:2963..2964Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12616 2964..2964 -
1622928981.9737766-UTR-H-canaliculatus_F_contig12616:3393..34031622928981.9737766-UTR-H-canaliculatus_F_contig12616:3393..3403Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12616 3394..3403 -
1696845637.7597919-UTR-H-canaliculatus_F_contig12616:3393..34031696845637.7597919-UTR-H-canaliculatus_F_contig12616:3393..3403Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12616 3394..3403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928981.9570596-CDS-H-canaliculatus_F_contig12616:2964..33931622928981.9570596-CDS-H-canaliculatus_F_contig12616:2964..3393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12616 2965..3393 -
1696845637.7457802-CDS-H-canaliculatus_F_contig12616:2964..33931696845637.7457802-CDS-H-canaliculatus_F_contig12616:2964..3393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12616 2965..3393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12616.2196.1

>prot_H-canaliculatus_F_contig12616.2196.1 ID=prot_H-canaliculatus_F_contig12616.2196.1|Name=mRNA_H-canaliculatus_F_contig12616.2196.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=143bp
MRAHLRRHYTTLFPLNRAELDQACKTIVEMLQKWTERNRAKYRICSSAVA
SPSPRMAEVITEYLHILVTATLQNPPVVFSDDCGMEQPFDSSTHSQPIDG
DALGKGARCIVVFPSMMQEAEDGSGFKPLSRKFVLPALASSS*
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mRNA from alignment at H-canaliculatus_F_contig12616:1032..3403-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12616.2196.1 ID=mRNA_H-canaliculatus_F_contig12616.2196.1|Name=mRNA_H-canaliculatus_F_contig12616.2196.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12616:1032..3403- (Hapterophycus canaliculatus Oshoro5f female)
GGCAGACTTCATGCGTGCGCACTTGCGCCGCCACTACACCACACTCTTCC
CCCTCAACAGGGCTGAACTCGACCAGGCATGCAAAACAATAGTTGAGATG
CTCCAAAAGTGGACCGAGAGAAACAGAGCGAAGTACCGTATTTGCTCTAG
CGCGGTAGCCTCCCCTTCTCCGAGAATGGCCGAGGTGATCACGGAGTATC
TGCACATATTGGTAACAGCGACCCTCCAGAATCCTCCGGTGGTATTCTCC
GACGACTGCGGGATGGAGCAACCATTCGACTCCAGCACTCACTCCCAGCC
GATCGATGGCGATGCTTTAGGAAAGGGAGCAAGATGCATTGTCGTGTTTC
CAAGCATGATGCAAGAAGCAGAAGATGGTAGCGGGTTCAAGCCCCTTTCA
AGGAAGTTCGTCCTGCCTGCCTTGGCATCATCGTCCTAAGGTACGGTCTA
GCAATGCATCTTGGCTGTGTACGACGGAGTGGCTTGGCATGGGATTTCAC
ATCTCTGTGTCGAGAATGTTAGTTCTCCAGCTCACGTCCATGTGCTTGAT
CCCTTTTCGATTCTGGTGAGTCGTGTCCGCATCGTCAGCTACCAACTCCG
AATTTGTTGTTGATCGATAGCGGTCGTAGCGTCGATAGACCCACGAAGGA
TTCATTTTCCCTGTGGTGCTGCGCTTGTTCCGTTCGCCAGGCTGGAAACA
AAAATGTCATTCAGTGTGTCGCCAATAAGGCGATTGAGTTAATGATAAAT
TTTCGGATGGATGCTCCAAACTTTCCATGGACGTCCCATGGGCATTACGA
TGGGCTAGTCCATATGATGAGCTGTGGACTACCCCATGAAACCGCCCATG
GAACGCCTTTGGACTGCACACGGAATTTCTGGGGCGGCCATGGAACTTTT
GGGCCGCCCATGAACAGTCTATGAACCGCCCATGAGACGTTTGGACGGTA
CATGGATGTTCCGTTGACAGTTCATGGATAGTCCATGAGCTGCCAATGGA
CTGTACATGACACGTACATAGAAACTCCATAGAACAGACTAGAAAAATCG
CAATCATGTACAGTAGGAATTCAGGAATGAGTCGTTTCATTGGGGGGTCA
AGGGGCACACTACTGTAGCGTTTAGACGAAGAGGGCGCTGCTAGAGTATT
AGAAAGGCTTTCTCTGGGTACCTTCCGTTTTCACGAATTCGAAGGGAACG
GAACTCTCTGAAATATCGTCGATCAATCGCGATGGCGCATGCAGTCCAAA
CGTACAGGGCTTCTGTAGACTGACCGTTGCGACTGTCGCTCCCGCCCGCT
AAACGAGGCGGAAGGCTGAACTTATCGTCAAATATTGGTCGCTCCTAACT
AAGCCTACCAACAGAGATGTGAACATCATCAGCTAACTGCCGCAGCGTAC
TGATGCAACATCAGGTATCGTAGGCCCTAAGTCGAACCGCGCTGCGTAGC
CTTAGCATCATAAATGAGTGTACATCGTAGTTCAGGAGGTTGCGCGAGGG
ACACCGCTTTTGGCGAGACACCACACGTAGACAGAATTGACATCGAAGTA
TCGTGAAACGGAACAATCATTTTGTGGAGCCTGTGAGATCGAAGCCCATC
TTGTTCCCGTCAGGCATCCTCCAAGTACTTGCCTGCCTACGCTAGATAAT
TGTACACGCTATACGCTATATTGAATGTTGAACCCTGCATTTTACTCCAT
GACTCGCAACTCATACAAGACCCGCTGCGGCGTTCGGGGTATTTGAAACC
GCAGGTGCCGCGGTTCAATTGCAGAAAGCTTCATCTATCTGCGACATCCC
TTTGCCAGCACGAGGGAAGAAGGGAGCATGTCGTGCGCAGCGCGAGTCTT
CTTCCTCCTCCGGCCGATGTAGAATAATCACGCCACGGGCAAGTAGAGTA
CAACAGTACAGTGCAGGTTGCCTGATCTCTCAGGGCAGACATTCCGTAGG
TCGTGTTATTGTCCGTGTCAATGCCGCTGACGGATTTGCTGCTGCTGCTA
AACTCCTGCTGATACTCCTCTCTGTCGAAGGTCTTGCGTGCATGCACAAG
ATGGATTGTGTGAAGAATGTGTTTGCGTGGCAACGAGGACAGCTTTCGAC
CGGACAGTTGGGATGCATACACCAAGAAGAGTGCGACTAAGAACAAGCCG
GGGTTATGGCTGCCAGCTCTCCATCCCTCCCCCTTCCACCTTGTGTGCAC
CCGTCACGGAAGGGGGCCTCCACTACTCGCTAAGGGCGTCTTGGCGGGTG
CAGTGTGTGCGACCGTTAATACCTTCTTGCGAAGTCCCACCTTCAAACAC
GGGAAGTCGTCCGTTGCTTATGGAAATGAAGTTAGCGTTTTATCTCACCA
ATGCCCTACACCGAGTTTTTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12616:1032..3403-

>mRNA_H-canaliculatus_F_contig12616.2196.1 ID=mRNA_H-canaliculatus_F_contig12616.2196.1|Name=mRNA_H-canaliculatus_F_contig12616.2196.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=858bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12616:1032..3403- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTGCGCACTTGCGCCGCCACTACACCACACTCTTCCCCCTCAACAG
GGCTGAACTCGACCAGGCATGCAAAACAATAGTTGAGATGCTCCAAAAGT
GGACCGAGAGAAACAGAGCGAAGTACCGTATTTGCTCTAGCGCGGTAGCC
TCCCCTTCTCCGAGAATGGCCGAGGTGATCACGGAGTATCTGCACATATT
GGTAACAGCGACCCTCCAGAATCCTCCGGTGGTATTCTCCGACGACTGCG
GGATGGAGCAACCATTCGACTCCAGCACTCACTCCCAGCCGATCGATGGC
GATGCTTTAGGAAAGGGAGCAAGATGCATTGTCGTGTTTCCAAGCATGAT
GCAAGAAGCAGAAGATGGTAGCGGGTTCAAGCCCCTTTCAAGGAAGTTCG
TCCTGCCTGCCTTGGCATCATCGTCCTAAATGCGTGCGCACTTGCGCCGC
CACTACACCACACTCTTCCCCCTCAACAGGGCTGAACTCGACCAGGCATG
CAAAACAATAGTTGAGATGCTCCAAAAGTGGACCGAGAGAAACAGAGCGA
AGTACCGTATTTGCTCTAGCGCGGTAGCCTCCCCTTCTCCGAGAATGGCC
GAGGTGATCACGGAGTATCTGCACATATTGGTAACAGCGACCCTCCAGAA
TCCTCCGGTGGTATTCTCCGACGACTGCGGGATGGAGCAACCATTCGACT
CCAGCACTCACTCCCAGCCGATCGATGGCGATGCTTTAGGAAAGGGAGCA
AGATGCATTGTCGTGTTTCCAAGCATGATGCAAGAAGCAGAAGATGGTAG
CGGGTTCAAGCCCCTTTCAAGGAAGTTCGTCCTGCCTGCCTTGGCATCAT
CGTCCTAA
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