mRNA_H-canaliculatus_F_contig12605.2188.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12605.2188.1
Unique NamemRNA_H-canaliculatus_F_contig12605.2188.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12605.2188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12605contigH-canaliculatus_F_contig12605:983..1330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size334
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12605.2188.1prot_H-canaliculatus_F_contig12605.2188.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12605 1074..1330 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928980.843342-UTR-H-canaliculatus_F_contig12605:982..10731622928980.843342-UTR-H-canaliculatus_F_contig12605:982..1073Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12605 983..1073 +
1696845637.2512856-UTR-H-canaliculatus_F_contig12605:982..10731696845637.2512856-UTR-H-canaliculatus_F_contig12605:982..1073Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12605 983..1073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928980.8628464-CDS-H-canaliculatus_F_contig12605:1073..12301622928980.8628464-CDS-H-canaliculatus_F_contig12605:1073..1230Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12605 1074..1230 +
1696845637.2592978-CDS-H-canaliculatus_F_contig12605:1073..12301696845637.2592978-CDS-H-canaliculatus_F_contig12605:1073..1230Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12605 1074..1230 +
1622928980.880197-CDS-H-canaliculatus_F_contig12605:1244..13301622928980.880197-CDS-H-canaliculatus_F_contig12605:1244..1330Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12605 1245..1330 +
1696845637.2673872-CDS-H-canaliculatus_F_contig12605:1244..13301696845637.2673872-CDS-H-canaliculatus_F_contig12605:1244..1330Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12605 1245..1330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12605.2188.1

>prot_H-canaliculatus_F_contig12605.2188.1 ID=prot_H-canaliculatus_F_contig12605.2188.1|Name=mRNA_H-canaliculatus_F_contig12605.2188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=81bp
MLGKQIIFPYPWQSGGQKEGKSACFLPNPCKWTKTGDEPRCVLWSIGNVS
SQRSGWLRRLKGRQLNRVCDEGPKSGATTS*
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mRNA from alignment at H-canaliculatus_F_contig12605:983..1330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12605.2188.1 ID=mRNA_H-canaliculatus_F_contig12605.2188.1|Name=mRNA_H-canaliculatus_F_contig12605.2188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12605:983..1330+ (Hapterophycus canaliculatus Oshoro5f female)
CGGGCAAAATTCCAACTGGACTATTTTACTTTATTTTTCGAAGATGCCGA
TCTGTTGAACCCAGGATCCAGAGGTGCAACCCAGTAGAAAAATGCTTGGA
AAACAAATCATATTCCCATACCCATGGCAGAGCGGCGGTCAAAAAGAAGG
AAAGAGTGCATGTTTTCTGCCAAACCCATGCAAGTGGACCAAAACAGGCG
ACGAGCCACGCTGTGTGCTCTGGTCGATTGGGAACGTGTCCTCTCAACGT
GTCCCCTCAAAGGCAGTGGATGGCTGAGGCGATTGAAGGGGAGACAACTC
AATAGAGTATGTGACGAAGGGCCGAAAAGTGGGGCGACCACGTCTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12605:983..1330+

>mRNA_H-canaliculatus_F_contig12605.2188.1 ID=mRNA_H-canaliculatus_F_contig12605.2188.1|Name=mRNA_H-canaliculatus_F_contig12605.2188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12605:983..1330+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTGGAAAACAAATCATATTCCCATACCCATGGCAGAGCGGCGGTCA
AAAAGAAGGAAAGAGTGCATGTTTTCTGCCAAACCCATGCAAGTGGACCA
AAACAGGCGACGAGCCACGCTGTGTGCTCTGGTCGATTGGGAACGTGTCC
TCTCAACATGCTTGGAAAACAAATCATATTCCCATACCCATGGCAGAGCG
GCGGTCAAAAAGAAGGAAAGAGTGCATGTTTTCTGCCAAACCCATGCAAG
TGGACCAAAACAGGCGACGAGCCACGCTGTGTGCTCTGGTCGATTGGGAA
CGTGTCCTCTCAACGCAGTGGATGGCTGAGGCGATTGAAGGGGAGACAAC
TCAATAGAGTATGTGACGAAGGGCCGAAAAGTGGGGCGACCACGTCTTGA
GCAGTGGATGGCTGAGGCGATTGAAGGGGAGACAACTCAATAGAGTATGT
GACGAAGGGCCGAAAAGTGGGGCGACCACGTCTTGA
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