mRNA_H-canaliculatus_F_contig126.2181.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig126.2181.1
Unique NamemRNA_H-canaliculatus_F_contig126.2181.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig126.2181.1 vs. uniprot
Match: D8LE32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE32_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 8.900e-39
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 1
Query:   43 RLLLIGMGGSIGGERTRKDGAFLLFDVLSMEIVYEGRDSRSWIRACCFSPDGKSFALASTDNKIYIYDATSYALRAK 273
            RLLLIGMGGSIGGERTRKDG FL+FDV +MEI+YEGRDSRSWIRACCFSPDGKSFA+ASTDNKIYIYD+ SYAL+AK
Sbjct: 1900 RLLLIGMGGSIGGERTRKDGTFLIFDVYNMEILYEGRDSRSWIRACCFSPDGKSFAVASTDNKIYIYDSKSYALKAK 1976          
BLAST of mRNA_H-canaliculatus_F_contig126.2181.1 vs. uniprot
Match: A0A6H5J7H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7H9_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.720e-37
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1
Query:   43 RLLLIGMGGSIGGERTRKDGAFLLFDVLSMEIVYEGRDSRSWIRACCFSPDGKSFALASTDNKIYIYDATSYALRAK 273
            RLLLIGMGGSIG ERTRKDG FL+FDV +MEI+YEGRDSRSWIRACCFSPDGK+FA+ASTDNKIYIYD+ SY L+AK
Sbjct:  254 RLLLIGMGGSIGCERTRKDGTFLIFDVYNMEILYEGRDSRSWIRACCFSPDGKTFAVASTDNKIYIYDSKSYGLKAK 330          
BLAST of mRNA_H-canaliculatus_F_contig126.2181.1 vs. uniprot
Match: A0A6U4DXH9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DXH9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.520e-22
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:   49 LLIGMGGSIGGERTRKDGAFLLFDVLSMEIVYEGRDSRSWIRACCFSPDGKSFALASTDNKIYIYDATSYALRAK 273
            LL+G+GGS  GERTRKDGAFL+ D  ++E+++EGRDSR WIR   FSPDG +  LAS+D+ IYIY  +S  LRAK
Sbjct:  423 LLVGLGGSESGERTRKDGAFLILDGETLEVLFEGRDSRHWIRDAKFSPDGSTIVLASSDHNIYIYTTSSLQLRAK 497          
BLAST of mRNA_H-canaliculatus_F_contig126.2181.1 vs. uniprot
Match: A0A7S3M7D2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7D2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.770e-22
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:   43 RLLLIGMGGSIGGERTRKDGAFLLFDVLSMEIVYEGRDSRSWIRACCFSPDGKSFALASTDNKIYIYDATSYALR 267
            + L++GMGGS  G+R RKDGAFL+ +  +++ +YEGRDSR WI    FSP+GKSFA+AS D+KIYIY+  +Y L+
Sbjct:  121 KFLIVGMGGSADGKRQRKDGAFLILESATLKPLYEGRDSRHWIPDVKFSPNGKSFAVASMDHKIYIYNGETYRLK 195          
BLAST of mRNA_H-canaliculatus_F_contig126.2181.1 vs. uniprot
Match: A0A7S2RR50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RR50_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.840e-21
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   43 RLLLIGMGGSIGGERTRKDGAFLLFDVLSMEIVYEGRDSRSWIRACCFSPDGKSFALASTDNKIYIYDATSYALRAK 273
            R +L+G GGS  G RT+KDGAF L    ++E++YEGRD+R W+    F+PDG +FALAS D KIY+YD+    +RAK
Sbjct:   19 RRILVGFGGSCRGVRTKKDGAFALLSAETLEVLYEGRDARHWLHDAKFTPDGSTFALASHDQKIYLYDSRQNIMRAK 95          
BLAST of mRNA_H-canaliculatus_F_contig126.2181.1 vs. uniprot
Match: A0A2R5G5S9_9STRA (Echinoderm microtubule-associated protein-like 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.050e-12
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   55 IGMGGSIGGERTRKDGAFLLF-DVLSMEIVYEGRDSRSWIRACCFSPDGKSFALASTDNKIYIYDAT-SYALRAK 273
            IG+GG++G  R +KDG  ++     ++++++E RDS+ WI    +SPDG++ A+AS DNKIY+YD   +Y LRAK
Sbjct: 2093 IGLGGTVGRGRQKKDGVVMVLRGTEALDLLHETRDSKEWIADAKYSPDGETLAVASYDNKIYMYDVNKNYELRAK 2167          
BLAST of mRNA_H-canaliculatus_F_contig126.2181.1 vs. uniprot
Match: A0A7S1C976_9STRA (Hypothetical protein n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C976_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.550e-12
Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   49 LLIGMGGSIGGERT---RKDGAFLLFDVLSMEIVYEGRDSRSWIRACCFSPDGKSFALASTDNKIYIYDATSYALR 267
            + +G+GG +G  R    RKDG F++ +   + ++++ RD+R WI    +SPDG + AL S DNKIY+YD +++ L+
Sbjct:  664 IALGLGGDVGRGRKGRDRKDGGFIVLNESDLAVLHQARDARQWISDIKYSPDGHTLALGSHDNKIYLYDVSTFHLK 739          
BLAST of mRNA_H-canaliculatus_F_contig126.2181.1 vs. uniprot
Match: K3XBQ4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBQ4_GLOUD)

HSP 1 Score: 68.2 bits (165), Expect = 2.370e-11
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   55 IGMGGSIGGERTRKDGAFLLFD--VLSMEIVYEGRDSRSWIRACCFSPDGKSFALASTDNKIYIYDATS-YALRA 270
            +G+G    G+R +KDG+ L+F+   LS+E+VYE RD++  I    +SPDG+S  + S DN IYIYD  S Y  RA
Sbjct: 1270 VGLGSGDTGKRHKKDGSLLVFEERTLSVELVYETRDTKQSISVIKYSPDGQSLVVGSLDNSIYIYDVPSNYTKRA 1344          
BLAST of mRNA_H-canaliculatus_F_contig126.2181.1 vs. uniprot
Match: A0A7R9W6B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6B9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.760e-10
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   64 GGSIGGERTRKDGAFLLFDVLSMEIVYEGRDSRSWIRACCFSPDGKSFALASTDNKIYIYD-ATSYALRA 270
            GG +GG+     G F + +  ++E ++  RD+  WI+   +SPDG   A+AS DNKIY+YD A  +AL+A
Sbjct:    1 GGRLGGKEEGPTGQFQVLNADTLESIHSARDTEEWIQDIKWSPDGSKLAVASHDNKIYLYDVAGGFALKA 70          
BLAST of mRNA_H-canaliculatus_F_contig126.2181.1 vs. uniprot
Match: A0A662Y7A1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y7A1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.490e-9
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   49 LLIGMGGSIGGERTRKDGAFLLFDV--LSMEIVYEGRDSRSWIRACCFSPDGKSFALASTDNKIYIYDATS-YALRA 270
            + +G+G    G R +KDG+ L+F+   LS+E++YE RD++  +    FSPDG+S    + D  +YIYD  S Y  RA
Sbjct: 1658 IAVGLGSGGTGRRHKKDGSLLVFEDRGLSVELIYETRDTKQSVSVLRFSPDGQSLVCGALDGAVYIYDVPSNYTKRA 1734          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig126.2181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LE32_ECTSI8.900e-3988.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7H9_9PHAE1.720e-3784.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U4DXH9_9STRA2.520e-2261.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3M7D2_9STRA8.770e-2256.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2RR50_9STRA5.840e-2153.25Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2R5G5S9_9STRA1.050e-1245.33Echinoderm microtubule-associated protein-like 1 n... [more]
A0A7S1C976_9STRA3.550e-1239.47Hypothetical protein n=2 Tax=Bicosoecida sp. CB-20... [more]
K3XBQ4_GLOUD2.370e-1146.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7R9W6B9_9STRA4.760e-1041.43Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A662Y7A1_9STRA3.490e-940.26Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig126contigH-canaliculatus_F_contig126:18498..19541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue8.7e-33
Seed eggNOG ortholog2880.D8LE32
KEGG koko:K18595,ko:K18598
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
Ec32 ortholog descriptionWD40 repeat protein
Ec32 orthologEc-05_004250.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.9856114-CDS-H-canaliculatus_F_contig126:18498..186661622928979.9856114-CDS-H-canaliculatus_F_contig126:18498..18666Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 18499..18666 -
1696845636.8533335-CDS-H-canaliculatus_F_contig126:18498..186661696845636.8533335-CDS-H-canaliculatus_F_contig126:18498..18666Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 18499..18666 -
1622928980.0026379-CDS-H-canaliculatus_F_contig126:19436..195411622928980.0026379-CDS-H-canaliculatus_F_contig126:19436..19541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 19437..19541 -
1696845636.8649392-CDS-H-canaliculatus_F_contig126:19436..195411696845636.8649392-CDS-H-canaliculatus_F_contig126:19436..19541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 19437..19541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig126.2181.1prot_H-canaliculatus_F_contig126.2181.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig126 18499..19541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig126.2181.1

>prot_H-canaliculatus_F_contig126.2181.1 ID=prot_H-canaliculatus_F_contig126.2181.1|Name=mRNA_H-canaliculatus_F_contig126.2181.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp
SFLAPVPPAVIMTTRLLLIGMGGSIGGERTRKDGAFLLFDVLSMEIVYEG
RDSRSWIRACCFSPDGKSFALASTDNKIYIYDATSYALRAK
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mRNA from alignment at H-canaliculatus_F_contig126:18498..19541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig126.2181.1 ID=mRNA_H-canaliculatus_F_contig126.2181.1|Name=mRNA_H-canaliculatus_F_contig126.2181.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1044bp|location=Sequence derived from alignment at H-canaliculatus_F_contig126:18498..19541- (Hapterophycus canaliculatus Oshoro5f female)
TCTTTCCTGGCGCCTGTGCCACCTGCGGTAATTATGACAACAAGGCTCCT TCTTATCGGGATGGGCGGCAGCATTGGCGGCGAACGCACGCGAAAGGATG GCGCGGTAAGCAAGCGTTTCAGAAACAGCTAGAAGCACAACCTTCTCGAA CCTAGTTCTCGCTAGCGGAGCTCCCGCACACCTCAACCAAAAACGGAGCG TGCCCTCTGGTCGGCACCACTCACGAGCGCGCACGTGCAAAGGCTGATGC AGGAAGAAAGTAGCCCAAGCAGAGCCGACAAGCTTTTTCTTTTTTCCCGA AAACGCGTTTTCTTACCCGCCCGCTACGATATGCGACTTGGCGCTCAAAA TAACTGGGTCAGTATAGAAGGTGGCAGAGGAAACTCAAGACCAATTGGAG GAGCAGAGTCATCCGAAAGTGGGAATTTACTCGGAAACAGCATCGAGCCG TCAACAAGGTCACAACCAACATAGTCGGGACAAACGCACAACACTGGCAG TGTTGTGCGAGAAAGTTTTGTCTACCCACAGTCTCTTTACCGCGGACGAC AAAAACACTTTCATGCACACTCGTGCAGCACGCGTCGCAAAGTACCTCTT GGGTGCTTTGTGACTGGTCGTCGAACGCCATTTACGACGCTTGTCAGTGC TGTGACTTAAACTATTGTAACACAGCGTCATCGTCACTCAGAAGCTGCAC GCCGCCAGTTCGTGGGAAACGTGACTTCAGTCAGCTTTCTCTGCGAGGTT TCAATCGCGCCAAATTAATAAAACGCGATACCTCTGTTTTCGCACATGGT ACTCTTGGGTCTGCATACCTAGGCCTGTACTGACATATCATTCCACGTGT ATTGCTTGCGTGTGCGTACCGTTAGTTCCTTCTGTTTGATGTGCTGAGTA TGGAGATCGTGTATGAGGGGAGGGACTCTCGGTCTTGGATCCGAGCTTGC TGCTTCAGCCCCGACGGGAAGAGCTTCGCGCTGGCGTCCACGGACAACAA AATCTACATCTACGACGCCACCTCGTACGCGCTCAGAGCAAAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig126:18498..19541-

>mRNA_H-canaliculatus_F_contig126.2181.1 ID=mRNA_H-canaliculatus_F_contig126.2181.1|Name=mRNA_H-canaliculatus_F_contig126.2181.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig126:18498..19541- (Hapterophycus canaliculatus Oshoro5f female)
TCTTTCCTGGCGCCTGTGCCACCTGCGGTAATTATGACAACAAGGCTCCT
TCTTATCGGGATGGGCGGCAGCATTGGCGGCGAACGCACGCGAAAGGATG
GCGCGTCTTTCCTGGCGCCTGTGCCACCTGCGGTAATTATGACAACAAGG
CTCCTTCTTATCGGGATGGGCGGCAGCATTGGCGGCGAACGCACGCGAAA
GGATGGCGCGTTCCTTCTGTTTGATGTGCTGAGTATGGAGATCGTGTATG
AGGGGAGGGACTCTCGGTCTTGGATCCGAGCTTGCTGCTTCAGCCCCGAC
GGGAAGAGCTTCGCGCTGGCGTCCACGGACAACAAAATCTACATCTACGA
CGCCACCTCGTACGCGCTCAGAGCAAAGTTCCTTCTGTTTGATGTGCTGA
GTATGGAGATCGTGTATGAGGGGAGGGACTCTCGGTCTTGGATCCGAGCT
TGCTGCTTCAGCCCCGACGGGAAGAGCTTCGCGCTGGCGTCCACGGACAA
CAAAATCTACATCTACGACGCCACCTCGTACGCGCTCAGAGCAAAG
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