mRNA_H-canaliculatus_F_contig1259.2174.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1259.2174.1
Unique NamemRNA_H-canaliculatus_F_contig1259.2174.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1259.2174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1259contigH-canaliculatus_F_contig1259:22991..23586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size596
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1259.2174.1prot_H-canaliculatus_F_contig1259.2174.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1259 23168..23470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928977.9646513-UTR-H-canaliculatus_F_contig1259:22990..231671622928977.9646513-UTR-H-canaliculatus_F_contig1259:22990..23167Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1259 22991..23167 +
1696845635.8352191-UTR-H-canaliculatus_F_contig1259:22990..231671696845635.8352191-UTR-H-canaliculatus_F_contig1259:22990..23167Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1259 22991..23167 +
1622928977.9962032-UTR-H-canaliculatus_F_contig1259:23470..235861622928977.9962032-UTR-H-canaliculatus_F_contig1259:23470..23586Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1259 23471..23586 +
1696845635.8560832-UTR-H-canaliculatus_F_contig1259:23470..235861696845635.8560832-UTR-H-canaliculatus_F_contig1259:23470..23586Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1259 23471..23586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928977.979307-CDS-H-canaliculatus_F_contig1259:23167..234701622928977.979307-CDS-H-canaliculatus_F_contig1259:23167..23470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 23168..23470 +
1696845635.8454113-CDS-H-canaliculatus_F_contig1259:23167..234701696845635.8454113-CDS-H-canaliculatus_F_contig1259:23167..23470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1259 23168..23470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1259.2174.1

>prot_H-canaliculatus_F_contig1259.2174.1 ID=prot_H-canaliculatus_F_contig1259.2174.1|Name=mRNA_H-canaliculatus_F_contig1259.2174.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MSSEESPPRLDAAVAHEESEDDDDASSSSDDGLLFKYPRRGGEIKYKSSC
SFPAEAATFVPRVAVREGYLELAPKRVQRPDSWRKAATRSPRTQCRVRPN
*
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mRNA from alignment at H-canaliculatus_F_contig1259:22991..23586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1259.2174.1 ID=mRNA_H-canaliculatus_F_contig1259.2174.1|Name=mRNA_H-canaliculatus_F_contig1259.2174.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=596bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1259:22991..23586+ (Hapterophycus canaliculatus Oshoro5f female)
AAAACGGGACGAGCAATACTTGTGGGAGACACAGGGGAACATCATCTCAG
AGCGAGAGAGACCAAGCTCACACAGGAGCCAGAGCGAACACCCCGTGCCG
ACCACAGTCGTCGCCGAACCATTCTGGACCCCGCACGGGTTCTGCTTGTC
AATTGGCAGCGTTCGGTGATCGTTGTCATGTCCTCTGAAGAATCCCCTCC
TCGTCTCGACGCAGCTGTTGCCCATGAGGAGTCGGAGGATGATGATGATG
CCAGCAGCAGCTCGGACGACGGGCTCCTTTTCAAGTACCCACGGCGCGGC
GGTGAGATCAAGTATAAATCATCATGTAGTTTCCCTGCGGAGGCGGCTAC
GTTTGTACCCAGGGTGGCGGTCCGTGAGGGTTACCTGGAGCTGGCTCCGA
AGAGAGTGCAACGGCCAGACAGTTGGCGCAAGGCCGCAACCCGCTCCCCC
CGAACCCAGTGCCGTGTTCGACCCAACTAACGGAGCTCTTCATCTGGAAT
GTCTGTAGACAGCCTTCCACGTGGGTTGACTGGCTCATCACCCCTGCCCT
CCACGGCTAGAGAATTGGGGCCAATTTTATTTGTTTTTCACCTGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1259:22991..23586+

>mRNA_H-canaliculatus_F_contig1259.2174.1 ID=mRNA_H-canaliculatus_F_contig1259.2174.1|Name=mRNA_H-canaliculatus_F_contig1259.2174.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1259:22991..23586+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCTCTGAAGAATCCCCTCCTCGTCTCGACGCAGCTGTTGCCCATGA
GGAGTCGGAGGATGATGATGATGCCAGCAGCAGCTCGGACGACGGGCTCC
TTTTCAAGTACCCACGGCGCGGCGGTGAGATCAAGTATAAATCATCATGT
AGTTTCCCTGCGGAGGCGGCTACGTTTGTACCCAGGGTGGCGGTCCGTGA
GGGTTACCTGGAGCTGGCTCCGAAGAGAGTGCAACGGCCAGACAGTTGGC
GCAAGGCCGCAACCCGCTCCCCCCGAACCCAGTGCCGTGTTCGACCCAAC
TAAATGTCCTCTGAAGAATCCCCTCCTCGTCTCGACGCAGCTGTTGCCCA
TGAGGAGTCGGAGGATGATGATGATGCCAGCAGCAGCTCGGACGACGGGC
TCCTTTTCAAGTACCCACGGCGCGGCGGTGAGATCAAGTATAAATCATCA
TGTAGTTTCCCTGCGGAGGCGGCTACGTTTGTACCCAGGGTGGCGGTCCG
TGAGGGTTACCTGGAGCTGGCTCCGAAGAGAGTGCAACGGCCAGACAGTT
GGCGCAAGGCCGCAACCCGCTCCCCCCGAACCCAGTGCCGTGTTCGACCC
AACTAA
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