mRNA_H-canaliculatus_F_contig12583.2168.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12583.2168.1
Unique NamemRNA_H-canaliculatus_F_contig12583.2168.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12583.2168.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.130e-20
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    4 GGVSVLTSVLDLARAAVCALGPLVSHLERFGLDRSLASPDLTSFSRSQYMTLDAVT 171
            G   VLT VLDL R A+CALGPL++HLERFGLDRSLASPDL+SFS+SQYMTLDAVT
Sbjct:  734 GCAPVLTRVLDLPRPAICALGPLMTHLERFGLDRSLASPDLSSFSKSQYMTLDAVT 789
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BLAST of mRNA_H-canaliculatus_F_contig12583.2168.1 vs. uniprot
Match: A0A6H5K0Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.500e-9
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   61 LGPLVSHLERFGLDRSLASPDLTSFSRSQYMTLDAVT 171
            +G L    +RFGLDRSLASPDL+SFS+SQYMTLDAVT
Sbjct:   10 VGALFVFFQRFGLDRSLASPDLSSFSKSQYMTLDAVT 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12583.2168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYL3_ECTSI3.130e-2080.36MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K0Q9_9PHAE1.500e-975.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12583contigH-canaliculatus_F_contig12583:1147..1879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.7e-16
Seed eggNOG ortholog2880.D7FYL3
KEGG koko:K08736
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
EggNOG free text desc.Component of the post-replicative DNA mismatch repair system (MMR)
EggNOG OGsCOG0249@1,KOG0218@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categorysignal peptide
Exons2
Model size174
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928977.8508887-CDS-H-canaliculatus_F_contig12583:1148..12321622928977.8508887-CDS-H-canaliculatus_F_contig12583:1148..1232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12583 1149..1232 -
1696845635.7788963-CDS-H-canaliculatus_F_contig12583:1148..12321696845635.7788963-CDS-H-canaliculatus_F_contig12583:1148..1232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12583 1149..1232 -
1622928977.8617415-CDS-H-canaliculatus_F_contig12583:1792..18791622928977.8617415-CDS-H-canaliculatus_F_contig12583:1792..1879Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12583 1793..1879 -
1696845635.7916186-CDS-H-canaliculatus_F_contig12583:1792..18791696845635.7916186-CDS-H-canaliculatus_F_contig12583:1792..1879Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12583 1793..1879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12583.2168.1prot_H-canaliculatus_F_contig12583.2168.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12583 1149..1879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12583.2168.1

>prot_H-canaliculatus_F_contig12583.2168.1 ID=prot_H-canaliculatus_F_contig12583.2168.1|Name=mRNA_H-canaliculatus_F_contig12583.2168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
RGGVSVLTSVLDLARAAVCALGPLVSHLERFGLDRSLASPDLTSFSRSQY
MTLDAVT
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mRNA from alignment at H-canaliculatus_F_contig12583:1147..1879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12583.2168.1 ID=mRNA_H-canaliculatus_F_contig12583.2168.1|Name=mRNA_H-canaliculatus_F_contig12583.2168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=733bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12583:1147..1879- (Hapterophycus canaliculatus Oshoro5f female)
AGAGGCGGTGTGTCCGTGCTGACAAGCGTGCTTGATCTTGCTCGGGCCGC
AGTCTGTGCGCTAGGTCCCTTGGTTTCTCACCTAGAGGTGAGCGTGTGTT
GTCGTGGTCAGGTCACATCCTTTCTCAAGGTGTGTATTCGATGTTTGATA
CAACGCTCAACTGCTGTACATGTAGTTGTGGTTTCAAACCATTACCAAGG
TGGGATGGTCGTGCCGACCAGCGCAGTGCACAATCAACGGAGCGACTCGC
ACTCCCAACCGAGGAAATTTTCCCGCGGCCCCACTTCGGAGTTGATTTGT
CGGGGGAAACCAAGATTGGTCAGTCCTAAGTGCAAATTGTCTCGTTGTTC
GGCTTCAGTGAAAGCCACGAGTGGTCGTGGAACCATGACTGAAAATGGGC
GATGCCGTGAGGACCGACTTGTTATTTCACTCCTTTGCTTCTTTTTGGGT
TTTCTTTTCCCTCAACCGCGGTCTTCAAGATGGTGACAATTCTGTGCTCT
ACTTCTGTGTGGCAGCTTCAAGATCCAGTCTACGCCGCCGCCGCGAAAAG
CGTAGCCATGTACAAGTATTGGTCTCGTGTGCGTGAAGTGTCATAGAATG
CTCTCTCTCACATGCGGGTGTGATATCCACCTTCTCCTTTTTCGCAGCGC
TTCGGCCTCGATCGTTCGCTGGCTTCGCCGGATCTGACGAGCTTCTCGAG
GTCGCAGTACATGACTCTGGACGCGGTGACTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12583:1147..1879-

>mRNA_H-canaliculatus_F_contig12583.2168.1 ID=mRNA_H-canaliculatus_F_contig12583.2168.1|Name=mRNA_H-canaliculatus_F_contig12583.2168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12583:1147..1879- (Hapterophycus canaliculatus Oshoro5f female)
AGAGGCGGTGTGTCCGTGCTGACAAGCGTGCTTGATCTTGCTCGGGCCGC
AGTCTGTGCGCTAGGTCCCTTGGTTTCTCACCTAGAGAGAGGCGGTGTGT
CCGTGCTGACAAGCGTGCTTGATCTTGCTCGGGCCGCAGTCTGTGCGCTA
GGTCCCTTGGTTTCTCACCTAGAGCGCTTCGGCCTCGATCGTTCGCTGGC
TTCGCCGGATCTGACGAGCTTCTCGAGGTCGCAGTACATGACTCTGGACG
CGGTGACTCGCTTCGGCCTCGATCGTTCGCTGGCTTCGCCGGATCTGACG
AGCTTCTCGAGGTCGCAGTACATGACTCTGGACGCGGTGACT
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