mRNA_H-canaliculatus_F_contig1250.2118.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1250.2118.1
Unique NamemRNA_H-canaliculatus_F_contig1250.2118.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1250.2118.1 vs. uniprot
Match: A0A6H5KXE7_9PHAE (Inositol-3-phosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXE7_9PHAE)

HSP 1 Score: 415 bits (1067), Expect = 1.050e-137
Identity = 205/230 (89.13%), Postives = 219/230 (95.22%), Query Frame = 1
Query:    1 GILIVGFGGGNGVTVAAGVLANQKDISWEGPTGRNSPNYLGCITQLPSKGGNGGYRERYDLADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVREEMDSLKLLPGVWDPDFIGESQHESATFVAGDGDSQQSRLDRLRKDIQEFRESESVTGHMTVIWSASVERPSEREFEEPSELLEAIAGDDKEVSPSMLYATAAVLERCSFVNGGSQNTMCGALFKLAEVMKC 690
            GILIVGFGGGNGVTVAAGVLANQK+ISWEGPTGRNSPNYLGCITQ+PSKGG+GGYRERY LADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVR+EMD+L+LLPGVWDPDFIGESQHESAT V GDG+SQQSRL+RLRKDI+EFRE+E V GH+TVIWSASVERPSEREF+EPS+LLEAIA DDKEVSPSMLYA+AAVLE CSFVNGGSQNTMCGAL KLAE   C
Sbjct:   38 GILIVGFGGGNGVTVAAGVLANQKNISWEGPTGRNSPNYLGCITQVPSKGGSGGYRERYALADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVRDEMDTLRLLPGVWDPDFIGESQHESATHVVGDGESQQSRLERLRKDIREFREAEGVMGHVTVIWSASVERPSEREFQEPSQLLEAIAADDKEVSPSMLYASAAVLEGCSFVNGGSQNTMCGALLKLAEDNAC 267          
BLAST of mRNA_H-canaliculatus_F_contig1250.2118.1 vs. uniprot
Match: A0A7S2KHT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KHT0_9STRA)

HSP 1 Score: 259 bits (662), Expect = 2.540e-83
Identity = 135/233 (57.94%), Postives = 174/233 (74.68%), Query Frame = 1
Query:    1 GILIVGFGGGNGVTVAAGVLANQKDISWEGPTGRNSPNYLGCITQLPSKGGNGG--YRERYD-LADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVREEMDSLKLLPGVWDPDFIGESQHESATFVAG--DGDSQQSRLDRLRKDIQEFRESESVTGHMTVIWSASVERPSEREFEEPSELLEAIAGDDK--EVSPSMLYATAAVLERCSFVNGGSQNTMCGALFKLAE 678
            GIL+VG GG NGVT+ AG +AN+  +SWE   GR S N+ GC+TQ+P +G +GG  ++ RY+ LA A+ AAIGGWDIR T LG+ALY+ R+L+ DLVRQVREEMD + ++PGVWDP FIGESQHE+A  V    D  S + RL+R+R+DI+ ++E  +V GH+TVIWSASVERPSE E++   ELLEAI  D    ++SPS+LYA A+ LE CSFVNGGSQNT+  A+  L E
Sbjct:   14 GILVVGIGGNNGVTLLAGQIANRDKLSWETGPGRVSANWFGCLTQIPPRGVHGGVGFQGRYEGLASADKAAIGGWDIRSTKLGQALYDCRVLEPDLVRQVREEMDGMDIMPGVWDPSFIGESQHETALNVVSGEDNSSTRCRLERIRRDIRMWKEKNNVDGHITVIWSASVERPSEAEYKSADELLEAIYDDSNTDDISPSVLYAAASALEGCSFVNGGSQNTLSAAMTSLFE 246          
BLAST of mRNA_H-canaliculatus_F_contig1250.2118.1 vs. uniprot
Match: A0A4D9DD96_9STRA (Inositol-3-phosphate synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD96_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.420e-79
Identity = 135/228 (59.21%), Postives = 166/228 (72.81%), Query Frame = 1
Query:    1 GILIVGFGGGNGVTVAAGVLANQKDISWEGPTGRNSPNYLGCITQLPSKGGNGGYRERYDLADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVREEMDSLKLLPGVWDPDFIGESQHESATFVAGDGDSQQSR-LDRLRKDIQEFRESESV--TGHMTVIWSASVERPSEREFEEPSELLEAIAGDDKEVSPSMLYATAAVLERCSFVNGGSQNTMCGALFKLA 675
            GILIVG GG NGVT+ AG+ ANQ  + WE PTG+   NYLGCITQLP KGG GGY+E Y+LADAN AA+GGWDIR TPLG+ALY + +LD+DLVRQVR  ++ +++  GVWDP FIGESQH +AT       +  ++ L  LR DI+ FR   ++   GH+TVIWSASVERPS  ++   + LL  I  +D EVSPS+LYA AA LE CSFVNGGSQNT+C  L +LA
Sbjct:    8 GILIVGLGGNNGVTLLAGLRANQLGLEWEAPTGKVKANYLGCITQLPKKGGKGGYKEAYELADANRAAVGGWDIRSTPLGDALYASHVLDYDLVRQVRTSLNQVEIWKGVWDPSFIGESQHATATNAVDLSTTTHAQALALLRADIRRFRRLHNIPLAGHITVIWSASVERPSLGDYPTATALLAGIEANDPEVSPSLLYAAAACLEGCSFVNGGSQNTLCPGLTELA 235          
BLAST of mRNA_H-canaliculatus_F_contig1250.2118.1 vs. uniprot
Match: A0A6U3PKF6_9STRA (Inositol-3-phosphate synthase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PKF6_9STRA)

HSP 1 Score: 254 bits (649), Expect = 3.930e-79
Identity = 127/233 (54.51%), Postives = 174/233 (74.68%), Query Frame = 1
Query:    1 GILIVGFGGGNGVTVAAGVLANQKDISWEGPTGRNSPNYLGCITQLPSKGGNGG--YRERYDLADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVREEMDSLKLLPGVWDPDFIGESQHESATFVAG--DGDSQQSRLDRLRKDIQEFRESESVTGHMTVIWSASVERPSEREFEEPSELLEAI---AGDDKEVSPSMLYATAAVLERCSFVNGGSQNTMCGALFKLAE 678
            G+L+VG GG NGVT+ AG +AN K + WE  TGRNS N+ GCITQL  +G +GG  ++ RY+L+DA N A+ GWDIRPT LG+ALY +R+LD+DLVRQVR+EM+ ++++ GV+D  F+GESQH +AT +    D  S +S++++LR DI+ F+E E+V GH+TVIWSASVER ++ ++    ELL  I   +   K++SPS+LYA AA LE CSFVNGGSQNT+ GAL +L +
Sbjct:   13 GMLVVGLGGNNGVTLLAGCIANSKSLEWETQTGRNSANWYGCITQLEPRGQHGGVGFKGRYNLSDAANMAVSGWDIRPTKLGDALYESRVLDYDLVRQVRDEMNDIEIMKGVYDASFVGESQHATATHIVSGADASSFKSQVEKLRSDIRAFKEKENVDGHITVIWSASVERIADVDYNSADELLHDIYESSSSGKDISPSILYAVAAALEGCSFVNGGSQNTLSGALSQLFD 245          
BLAST of mRNA_H-canaliculatus_F_contig1250.2118.1 vs. uniprot
Match: A0A836C7R3_9STRA (Inositol-3-phosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R3_9STRA)

HSP 1 Score: 258 bits (660), Expect = 4.010e-78
Identity = 129/190 (67.89%), Postives = 154/190 (81.05%), Query Frame = 1
Query:  106 SPNYLGCITQLPSKGGNGGYRERYDLADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVREEMDSLKLLPGVWDPDFIGESQHESATFVAGDGDSQQSRLDRLRKDIQEFRESESVTGHMTVIWSASVERPSEREFEEPSELLEAIAGDDKEVSPSMLYATAAVLERCSFVNGGSQNTMCGALFKLA 675
            S N LGCITQLP KGG+GGY++RY LAD  +AA+GGWDIR TPLG+ALY+ARILDFDLVRQV+ EMD+L ++PGVWD DFIG++QH +AT VA    S Q++LD LR DI+++   + VTGH TVIWSASVERPSER F+  +ELL A+  DD EVSPSMLYA AA LE CSFVNGGSQNT+C AL +LA
Sbjct:    2 SANLLGCITQLPEKGGSGGYKQRYGLADFCSAAVGGWDIRGTPLGQALYDARILDFDLVRQVQAEMDTLHVMPGVWDADFIGDTQHATATHVAPASLSVQAKLDLLRGDIKKWIREQGVTGHTTVIWSASVERPSERNFKTAAELLSAVEADDPEVSPSMLYAAAAALEGCSFVNGGSQNTLCAALAELA 191          
BLAST of mRNA_H-canaliculatus_F_contig1250.2118.1 vs. uniprot
Match: A0A7S2UBK3_9STRA (Inositol-3-phosphate synthase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBK3_9STRA)

HSP 1 Score: 249 bits (635), Expect = 2.830e-77
Identity = 125/225 (55.56%), Postives = 168/225 (74.67%), Query Frame = 1
Query:   22 GGGNGVTVAAGVLANQKDISWEGPTGRNSPNYLGCITQLPSKGGNGG--YRERYDLADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVREEMDSLKLLPGVWDPDFIGESQHESATFVAGDGDSQ--QSRLDRLRKDIQEFRESESVTGHMTVIWSASVERPSEREFEEPSELLEAI-AGDDKEVSPSMLYATAAVLERCSFVNGGSQNTMCGALFKLAEV 681
            GG NGVT+AAG +AN+  +SWE    R   N+ GCITQ+P +G +GG  ++ RY L DA  AAIGGWDIRPT LG+ALY++R+L +DLVRQVR+EMD ++++PGV+DP F+GE+QH +AT +  + D++  +S+++RLR DI+ F+    V GH TVIWSASVERPSE E+    ELL AI +  + ++SPS+LYA A+ LE CSFVNGGSQNT+  AL +L EV
Sbjct:    1 GGNNGVTLAAGFIANRDHLSWETEAERMDANWYGCITQVPPRGHHGGVGFKGRYPLGDAGRAAIGGWDIRPTRLGQALYDSRVLAYDLVRQVRDEMDEMEIMPGVFDPSFVGETQHATATHIVSEKDTETWRSKVERLRSDIRRFKLENDVDGHTTVIWSASVERPSEAEYSSADELLSAIDSNKNDDISPSILYAVASALEGCSFVNGGSQNTLSTALSELYEV 225          
BLAST of mRNA_H-canaliculatus_F_contig1250.2118.1 vs. uniprot
Match: W7U929_9STRA (Glucose-6-phosphate isomerase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U929_9STRA)

HSP 1 Score: 263 bits (671), Expect = 4.000e-77
Identity = 135/228 (59.21%), Postives = 165/228 (72.37%), Query Frame = 1
Query:    1 GILIVGFGGGNGVTVAAGVLANQKDISWEGPTGRNSPNYLGCITQLPSKGGNGGYRERYDLADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVREEMDSLKLLPGVWDPDFIGESQHESATFVAGDGDSQQSR-LDRLRKDIQEFRESESV--TGHMTVIWSASVERPSEREFEEPSELLEAIAGDDKEVSPSMLYATAAVLERCSFVNGGSQNTMCGALFKLA 675
            GILIVG GG NGVT+ AG+ ANQ  + WE PTG+   NYLGCITQLP KGG GGY+E Y+LADAN AA+GGWDIR TPLG+ALY + +LD+DLVRQVR  ++ ++   GVWDP FIGESQH +AT       +  ++ L  LR DI+ FR   ++   GH+TVIWSASVERPS  ++   + LL  I  +D EVSPS+LYA AA LE CSFVNGGSQNT+C  L +LA
Sbjct:    8 GILIVGLGGNNGVTLLAGLRANQLGLEWEAPTGKVKANYLGCITQLPKKGGKGGYKEAYELADANRAAVGGWDIRSTPLGDALYASHVLDYDLVRQVRASLNQVEKWKGVWDPSFIGESQHATATNAVDLSTTTHAQALALLRADIRRFRRLHNIPLAGHITVIWSASVERPSLGDYPTATALLAGIEANDPEVSPSLLYAAAACLEGCSFVNGGSQNTLCPGLTELA 235          
BLAST of mRNA_H-canaliculatus_F_contig1250.2118.1 vs. uniprot
Match: A0A7S1VGN6_9STRA (Inositol-3-phosphate synthase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VGN6_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.360e-71
Identity = 123/230 (53.48%), Postives = 164/230 (71.30%), Query Frame = 1
Query:   19 FGGGNGVTVAAGVLANQKDISWE----GPTGRNSPNYLGCITQLPSKGGNGGYRERYDLADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVREEMDSLKLLPGVWDPDFIGESQHESATFVAGDGDSQQSRLDRLRKDIQEFRESESVTGHMTVIWSASVERPSEREFEEPSELLEAIAGD------DKEVSPSMLYATAAVLERCSFVNGGSQNTMCGALFKLAE 678
             GG NGVT+ AG +AN++ ++WE    GP   ++PN+ GCITQLP KGG  G++ R+DLADA  AA+GGWDIRPTPLG+ALY  R+L++DLVRQVR+EM+ L +L GV++ DF+GESQ+ +AT V  +  S    ++ +R DI+ F     V GH+TV+WSASVERPS  EF + ++LL+ I         D ++SPS+LYA AA LE CSFVNGGSQNTM  A+ +L E
Sbjct:    1 LGGNNGVTLLAGHIANRRKLTWETAAVGPV--SAPNWSGCITQLPQKGGGVGFQGRFDLADAAEAAVGGWDIRPTPLGDALYECRVLEYDLVRQVRDEMNDLTILKGVYNEDFLGESQYATATHVV-EKRSFFGYVEHIRNDIRHFISENQVDGHLTVVWSASVERPSAAEFADANDLLDTILKSKDEELTDVDMSPSILYAVAAGLEGCSFVNGGSQNTMSNAMCELYE 227          
BLAST of mRNA_H-canaliculatus_F_contig1250.2118.1 vs. uniprot
Match: A0A7R9U921_9STRA (Inositol-3-phosphate synthase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U921_9STRA)

HSP 1 Score: 234 bits (598), Expect = 1.910e-71
Identity = 126/231 (54.55%), Postives = 166/231 (71.86%), Query Frame = 1
Query:    1 GILIVGFGGGNGVTVAAGVLANQKDISWEGPTGRNSPNYLGCITQLPSKG--GNGGYRERYDLADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVREEMDSLKLLPGVWDPDFIGESQHESATFVAGDGDS--QQSRLDRLRKDIQEFRESESVTGHMTVIWSASVERPSEREFEEPSELLEAIAGDDK-EVSPSMLYATAAVLERCSFVNGGSQNTMCGALFKLAE 678
            GIL+VG GG NGVT+ AG+LA ++ +S+E   GR   N  GCI+QL SKG     G+ +RYDLA   + A+GGWDIR TPLG+ALY +R+L++DL RQV+E+M+ L ++  VWDPDFIG+SQH +AT V    ++  ++ +++ LR DI+ F+E  +V GH T+IWSASVERP E +F    ELLEAI  D K EVSPS+LYA AA+LE  SF NGGSQNT+   L +LAE
Sbjct:   28 GILVVGLGGNNGVTMLAGLLAVRQQLSYEAYHGRVEANLGGCISQLASKGLYQGVGFADRYDLAKFEDCAMGGWDIRSTPLGDALYESRVLEYDLTRQVQEQMNQLPVMKAVWDPDFIGDSQHATATNVVEGLETMTRRQKVEHLRADIRRFKEENAVDGHCTLIWSASVERPCESDFNTAEELLEAIDQDAKGEVSPSILYAVAAILEGVSFCNGGSQNTLQPGLVRLAE 258          
BLAST of mRNA_H-canaliculatus_F_contig1250.2118.1 vs. uniprot
Match: A0A7S1UIV5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIV5_9STRA)

HSP 1 Score: 228 bits (581), Expect = 5.790e-71
Identity = 119/222 (53.60%), Postives = 160/222 (72.07%), Query Frame = 1
Query:    1 GILIVGFGGGNGVTVAAGVLANQKDISWEGPTGRNSPNYLGCITQLPSKGGNGG--YRERYDLADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVREEMDSLKLLPGVWDPDFIGESQHESATFVAGD--GDSQQSRLDRLRKDIQEFRESESVTGHMTVIWSASVERPSEREFEEPSELLEAIAGDD-KEVSPSMLYATAAVLERCSFVNGGSQNTM 651
            GIL+VG GG NGVT+ AG++A ++ +++E   G    N  GCI+QL SKG  GG  + +RYDLA   N A+GGWDIR TPLG+ALY +R+L++DL RQVR+ M++  ++PGVWD D+IGE+QHE+AT V  +    +++ +++ +R DI+ F+E   V GH TVIWSASVERP E EF+ P EL+ AI  D   EVSPS+LYA AA+ E  SF NGGSQNT+
Sbjct:   68 GILVVGLGGNNGVTMLAGLMAVKEKLTYESYMGSIQANLGGCISQLQSKGDYGGVGFADRYDLAAFENCALGGWDIRATPLGDALYASRVLEYDLTRQVRDAMNTFPVMPGVWDADWIGETQHETATHVVPNLATMTRKQKVEHIRADIRRFKEENGVDGHCTVIWSASVERPCESEFKTPEELMAAIEDDSIGEVSPSILYAVAAMEEGASFCNGGSQNTL 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1250.2118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXE7_9PHAE1.050e-13789.13Inositol-3-phosphate synthase n=2 Tax=Ectocarpus T... [more]
A0A7S2KHT0_9STRA2.540e-8357.94Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A4D9DD96_9STRA1.420e-7959.21Inositol-3-phosphate synthase n=1 Tax=Nannochlorop... [more]
A0A6U3PKF6_9STRA3.930e-7954.51Inositol-3-phosphate synthase n=3 Tax=Ditylum brig... [more]
A0A836C7R3_9STRA4.010e-7867.89Inositol-3-phosphate synthase n=1 Tax=Tribonema mi... [more]
A0A7S2UBK3_9STRA2.830e-7755.56Inositol-3-phosphate synthase n=1 Tax=Attheya sept... [more]
W7U929_9STRA4.000e-7759.21Glucose-6-phosphate isomerase n=2 Tax=Nannochlorop... [more]
A0A7S1VGN6_9STRA1.360e-7153.48Inositol-3-phosphate synthase n=1 Tax=Grammatophor... [more]
A0A7R9U921_9STRA1.910e-7154.55Inositol-3-phosphate synthase n=1 Tax=Pinguiococcu... [more]
A0A7S1UIV5_9STRA5.790e-7153.60Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1250contigH-canaliculatus_F_contig1250:626..1767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.3
Seed ortholog evalue4.6e-86
Seed eggNOG ortholog2880.D7FUT9
Preferred nameINO1
KEGG rclassRC01804
KEGG koko:K01858
KEGG ReactionR07324
KEGG Pathwayko00521,ko00562,ko01100,ko01130,map00521,map00562,map01100,map01130
EggNOG free text desc.inositol-3-phosphate synthase activity
EggNOG OGsCOG1260@1,KOG0693@2759
EC5.5.1.4
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size699
Cds size699
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928966.2000134-CDS-H-canaliculatus_F_contig1250:625..7871622928966.2000134-CDS-H-canaliculatus_F_contig1250:625..787Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1250 626..787 -
1696845632.9699717-CDS-H-canaliculatus_F_contig1250:625..7871696845632.9699717-CDS-H-canaliculatus_F_contig1250:625..787Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1250 626..787 -
1622928966.2144532-CDS-H-canaliculatus_F_contig1250:1230..17671622928966.2144532-CDS-H-canaliculatus_F_contig1250:1230..1767Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1250 1231..1767 -
1696845632.9828103-CDS-H-canaliculatus_F_contig1250:1230..17671696845632.9828103-CDS-H-canaliculatus_F_contig1250:1230..1767Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1250 1231..1767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1250.2118.1prot_H-canaliculatus_F_contig1250.2118.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1250 626..1767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1250.2118.1

>prot_H-canaliculatus_F_contig1250.2118.1 ID=prot_H-canaliculatus_F_contig1250.2118.1|Name=mRNA_H-canaliculatus_F_contig1250.2118.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=233bp
GILIVGFGGGNGVTVAAGVLANQKDISWEGPTGRNSPNYLGCITQLPSKG
GNGGYRERYDLADANNAAIGGWDIRPTPLGEALYNARILDFDLVRQVREE
MDSLKLLPGVWDPDFIGESQHESATFVAGDGDSQQSRLDRLRKDIQEFRE
SESVTGHMTVIWSASVERPSEREFEEPSELLEAIAGDDKEVSPSMLYATA
AVLERCSFVNGGSQNTMCGALFKLAEVMKCDA*
back to top

mRNA from alignment at H-canaliculatus_F_contig1250:626..1767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1250.2118.1 ID=mRNA_H-canaliculatus_F_contig1250.2118.1|Name=mRNA_H-canaliculatus_F_contig1250.2118.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1142bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1250:626..1767- (Hapterophycus canaliculatus Oshoro5f female)
GGCATATTGATCGTGGGTTTCGGAGGCGGAAACGGTGTTACCGTGGCCGC CGGCGTGCTTGCCAACCAGAAGGATATCAGCTGGGAGGGCCCGACCGGCC GCAACTCTCCCAACTACCTCGGCTGCATCACCCAGTTGCCAAGCAAGGGG GGAAACGGAGGATACCGCGAGCGCTACGACCTGGCCGACGCTAACAACGC CGCCATCGGCGGCTGGGATATCCGCCCTACCCCTCTCGGCGAGGCCCTCT ACAACGCGCGTATCCTGGACTTTGACCTCGTTCGGCAGGTGCGCGAGGAG ATGGACTCGCTGAAGCTGCTCCCGGGGGTTTGGGACCCGGACTTCATCGG CGAATCCCAGCATGAATCTGCGACCTTCGTGGCGGGCGACGGTGACAGCC AACAGAGCCGCCTCGATCGCCTCCGCAAGGACATCCAGGAGTTTAGGGAG AGCGAGAGCGTGACGGGACACATGACCGTAATCTGGAGCGCGAGCGTCGA GCGGCCCAGCGAGCGAGAATTCGAGGAGCCTAGCGAGGTGAAGACAGCAG CAGCATAACCATTTCCCGAATGGCTCTCTGTGCTGTCCGTTGTTCCTTCC TCATGGTGGACACTCATGACTGTCCTGCCAGGTACATTGCTAGGTCGACA GCAATGTTTTCATAGATTTTTCGTCGTCCTGGTATATTTCTGCTGACGCT TCCGCAGAAAGGTCTTGAAGGTGTCGACGACAGCAGTTTCCGCACAGCAG TGTCCGCATTGTTCTGGCTCTCCGCAAGCCACCGTCACGGCGGCACCAAC ACCCTGTCTGAGACTGCAAATCCTTTCTATCTCGATAGACACGCCCTCCG GTCGGTCGCCTCTCCCTTGCATGTGCTTCTCCGTGCGTCCTTCCTGTGCG CCAAAACCCGACCATGTTGGCTTTGGTTGTTGTAACTCCCGTTCTCCTGC GCCCTTCCTCTCGTGCTCGCTTGGCATCAGCTGTTGGAGGCAATCGCAGG GGACGACAAGGAGGTCTCTCCTTCCATGCTCTACGCGACAGCGGCGGTCC TGGAGAGATGCTCCTTCGTGAATGGCGGCTCGCAGAACACCATGTGCGGA GCGCTCTTCAAGCTGGCCGAGGTGATGAAGTGTGACGCGTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1250:626..1767-

>mRNA_H-canaliculatus_F_contig1250.2118.1 ID=mRNA_H-canaliculatus_F_contig1250.2118.1|Name=mRNA_H-canaliculatus_F_contig1250.2118.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1398bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1250:626..1767- (Hapterophycus canaliculatus Oshoro5f female)
GGCATATTGATCGTGGGTTTCGGAGGCGGAAACGGTGTTACCGTGGCCGC
CGGCGTGCTTGCCAACCAGAAGGATATCAGCTGGGAGGGCCCGACCGGCC
GCAACTCTCCCAACTACCTCGGCTGCATCACCCAGTTGCCAAGCAAGGGG
GGAAACGGAGGATACCGCGAGCGCTACGACCTGGCCGACGCTAACAACGC
CGCCATCGGCGGCTGGGATATCCGCCCTACCCCTCTCGGCGAGGCCCTCT
ACAACGCGCGTATCCTGGACTTTGACCTCGTTCGGCAGGTGCGCGAGGAG
ATGGACTCGCTGAAGCTGCTCCCGGGGGTTTGGGACCCGGACTTCATCGG
CGAATCCCAGCATGAATCTGCGACCTTCGTGGCGGGCGACGGTGACAGCC
AACAGAGCCGCCTCGATCGCCTCCGCAAGGACATCCAGGAGTTTAGGGAG
AGCGAGAGCGTGACGGGACACATGACCGTAATCTGGAGCGCGAGCGTCGA
GCGGCCCAGCGAGCGAGAATTCGAGGAGCCTAGCGAGGGCATATTGATCG
TGGGTTTCGGAGGCGGAAACGGTGTTACCGTGGCCGCCGGCGTGCTTGCC
AACCAGAAGGATATCAGCTGGGAGGGCCCGACCGGCCGCAACTCTCCCAA
CTACCTCGGCTGCATCACCCAGTTGCCAAGCAAGGGGGGAAACGGAGGAT
ACCGCGAGCGCTACGACCTGGCCGACGCTAACAACGCCGCCATCGGCGGC
TGGGATATCCGCCCTACCCCTCTCGGCGAGGCCCTCTACAACGCGCGTAT
CCTGGACTTTGACCTCGTTCGGCAGGTGCGCGAGGAGATGGACTCGCTGA
AGCTGCTCCCGGGGGTTTGGGACCCGGACTTCATCGGCGAATCCCAGCAT
GAATCTGCGACCTTCGTGGCGGGCGACGGTGACAGCCAACAGAGCCGCCT
CGATCGCCTCCGCAAGGACATCCAGGAGTTTAGGGAGAGCGAGAGCGTGA
CGGGACACATGACCGTAATCTGGAGCGCGAGCGTCGAGCGGCCCAGCGAG
CGAGAATTCGAGGAGCCTAGCGAGCTGTTGGAGGCAATCGCAGGGGACGA
CAAGGAGGTCTCTCCTTCCATGCTCTACGCGACAGCGGCGGTCCTGGAGA
GATGCTCCTTCGTGAATGGCGGCTCGCAGAACACCATGTGCGGAGCGCTC
TTCAAGCTGGCCGAGGTGATGAAGTGTGACGCGTAACTGTTGGAGGCAAT
CGCAGGGGACGACAAGGAGGTCTCTCCTTCCATGCTCTACGCGACAGCGG
CGGTCCTGGAGAGATGCTCCTTCGTGAATGGCGGCTCGCAGAACACCATG
TGCGGAGCGCTCTTCAAGCTGGCCGAGGTGATGAAGTGTGACGCGTAA
back to top