mRNA_H-canaliculatus_F_contig12498.2110.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12498.2110.1
Unique NamemRNA_H-canaliculatus_F_contig12498.2110.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12498.2110.1 vs. uniprot
Match: UPI000A2A80C7 (DNA topoisomerase 2-alpha-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A80C7)

HSP 1 Score: 127 bits (318), Expect = 3.860e-36
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 TVEQRYQKKTQLEHILLRPDTYIGSIEKLTQDMWVYDDATNSIVKRMVTYVPGLYKIFDEIIVNAADNKQRDANMSKLKV 240
            +VE+ YQKKTQLEHILLRPDTYIGS+E   Q MWVYDD  ++IV + +TYVPGLYKIFDEI+VNAADNKQRDANMS +K+
Sbjct:   27 SVERIYQKKTQLEHILLRPDTYIGSVEPNKQSMWVYDDILDAIVSKEITYVPGLYKIFDEILVNAADNKQRDANMSTIKI 106          
BLAST of mRNA_H-canaliculatus_F_contig12498.2110.1 vs. uniprot
Match: A0A7S3XY11_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY11_HETAK)

HSP 1 Score: 127 bits (320), Expect = 6.870e-36
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 TVEQRYQKKTQLEHILLRPDTYIGSIEKLTQDMWVYDDATNSIVKRMVTYVPGLYKIFDEIIVNAADNKQRDANMSKLKV 240
            TVEQ YQKKTQLEHILLRPDTY+GS+EK+TQ MWVYD   N IV + +TYVPGL+KIFDEIIVNAADNKQRD  M +++V
Sbjct:   33 TVEQIYQKKTQLEHILLRPDTYVGSVEKVTQPMWVYDPEQNKIVNKTITYVPGLFKIFDEIIVNAADNKQRDHRMDRIEV 112          
BLAST of mRNA_H-canaliculatus_F_contig12498.2110.1 vs. uniprot
Match: A0A7S2U9L6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9L6_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.840e-34
Identity = 58/80 (72.50%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 TVEQRYQKKTQLEHILLRPDTYIGSIEKLTQDMWVYDDATNSIVKRMVTYVPGLYKIFDEIIVNAADNKQRDANMSKLKV 240
            T+EQ YQKKTQLEHILLRPDTYIGS+E++TQ M+V D  T  +VKR +TY PGLYKIFDEI+VNAADNKQRD+NM K+++
Sbjct:  106 TIEQMYQKKTQLEHILLRPDTYIGSVERITQPMFVLDTNTKRLVKREITYTPGLYKIFDEILVNAADNKQRDSNMDKMEI 185          
BLAST of mRNA_H-canaliculatus_F_contig12498.2110.1 vs. uniprot
Match: A0A161TEZ0_TRIIF (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A161TEZ0_TRIIF)

HSP 1 Score: 122 bits (307), Expect = 6.580e-33
Identity = 57/83 (68.67%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 TVEQRYQKKTQLEHILLRPDTYIGSIEKLTQDMWVYDDATNSIVKRMVTYVPGLYKIFDEIIVNAADNKQRDANMSKLKVRTS 249
            TVE+ YQKK+QLEHILLRPDTYIGS+E +T+ MWVYD  T ++V+R ++YVPGLYKIFDEI+VNAADNKQRD+ M+ +K+  S
Sbjct:   19 TVEKIYQKKSQLEHILLRPDTYIGSVEPVTEQMWVYDTETETMVQREISYVPGLYKIFDEILVNAADNKQRDSTMNCIKITIS 101          
BLAST of mRNA_H-canaliculatus_F_contig12498.2110.1 vs. uniprot
Match: A0A835QN40_VANPL (HATPase_c domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QN40_VANPL)

HSP 1 Score: 119 bits (299), Expect = 7.290e-33
Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 TVEQRYQKKTQLEHILLRPDTYIGSIEKLTQDMWVYDDATNSIVKRMVTYVPGLYKIFDEIIVNAADNKQRDANMSKLKV 240
            T+E+ YQKKTQLEHILLRPDTYIGS+EK TQ++WV+++    +V R VTYVPGLYKIFDEI+VNAADNKQRD +M  LKV
Sbjct:   31 TIEEMYQKKTQLEHILLRPDTYIGSVEKHTQNLWVFENG--EMVNRPVTYVPGLYKIFDEILVNAADNKQRDPSMDSLKV 108          
BLAST of mRNA_H-canaliculatus_F_contig12498.2110.1 vs. uniprot
Match: A0A4P1R8Y0_LUPAN (DNA topoisomerase 2 n=3 Tax=Lupinus TaxID=3869 RepID=A0A4P1R8Y0_LUPAN)

HSP 1 Score: 129 bits (323), Expect = 9.590e-33
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 TVEQRYQKKTQLEHILLRPDTYIGSIEKLTQDMWVYDDATNSIVKRMVTYVPGLYKIFDEIIVNAADNKQRDANMSKLKV 240
            T+E+ YQKKTQLEHILLRPDTY+GS+EK TQ +WVYDD  + +V R +TYVPGLYKIFDEI+VNAADNKQRD NM  LKV
Sbjct:   21 TIEEMYQKKTQLEHILLRPDTYVGSVEKHTQTLWVYDDQNHDMVNRPITYVPGLYKIFDEILVNAADNKQRDPNMKWLKV 100          
BLAST of mRNA_H-canaliculatus_F_contig12498.2110.1 vs. uniprot
Match: A0A6P4BXN6_ARADU (DNA topoisomerase 2 n=5 Tax=Arachis TaxID=3817 RepID=A0A6P4BXN6_ARADU)

HSP 1 Score: 128 bits (321), Expect = 1.790e-32
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 TVEQRYQKKTQLEHILLRPDTYIGSIEKLTQDMWVYDDATNSIVKRMVTYVPGLYKIFDEIIVNAADNKQRDANMSKLKV 240
            T+E+ YQKKTQLEHILLRPDTY+GSIEK TQ +WVY+D  N +V R VTYVPGLYKIFDEI+VNAADNKQRD +M  LKV
Sbjct:   28 TIEEMYQKKTQLEHILLRPDTYVGSIEKHTQTLWVYNDINNEMVYRPVTYVPGLYKIFDEILVNAADNKQRDPSMDSLKV 107          
BLAST of mRNA_H-canaliculatus_F_contig12498.2110.1 vs. uniprot
Match: B9RVN2_RICCO (DNA topoisomerase II, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9RVN2_RICCO)

HSP 1 Score: 120 bits (301), Expect = 1.790e-32
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    1 TVEQRYQKKTQLEHILLRPDTYIGSIEKLTQDMWVYDDATNSIVKRMVTYVPGLYKIFDEIIVNAADNKQRDANMSKLKV 240
            T+E+ YQKK+QLEHILLRPDTYIGSIEK TQ +WVY+D    +V R VTYVPGLYKIFDEI+VNAADNKQRD  M  LKV
Sbjct:   20 TIEETYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYED--EKMVNRNVTYVPGLYKIFDEILVNAADNKQRDPTMDALKV 97          
BLAST of mRNA_H-canaliculatus_F_contig12498.2110.1 vs. uniprot
Match: A0A2K3NUV4_TRIPR (DNA topoisomerase 2-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NUV4_TRIPR)

HSP 1 Score: 120 bits (300), Expect = 2.220e-32
Identity = 57/80 (71.25%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 TVEQRYQKKTQLEHILLRPDTYIGSIEKLTQDMWVYDDATNSIVKRMVTYVPGLYKIFDEIIVNAADNKQRDANMSKLKV 240
            T+E+ YQKKTQLEHILLRPDTY+GSIEK TQ++WVY++  + +V R ++YVPGLYKIFDEI+VNAADNKQRD +M  LKV
Sbjct:   18 TIEEMYQKKTQLEHILLRPDTYVGSIEKHTQNLWVYEN--DEMVNRSISYVPGLYKIFDEILVNAADNKQRDPSMDSLKV 95          
BLAST of mRNA_H-canaliculatus_F_contig12498.2110.1 vs. uniprot
Match: T1HFP6_RHOPR (DNA topoisomerase 2 n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1HFP6_RHOPR)

HSP 1 Score: 119 bits (299), Expect = 2.460e-32
Identity = 55/80 (68.75%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 TVEQRYQKKTQLEHILLRPDTYIGSIEKLTQDMWVYDDATNSIVKRMVTYVPGLYKIFDEIIVNAADNKQRDANMSKLKV 240
            +VE+ YQKK+QLEHILLRPDTYIGS+E +T+ MWVYD  T S+V+R +++VPGLYKIFDEI+VNAADNKQRD  M+ +K+
Sbjct:   19 SVEKIYQKKSQLEHILLRPDTYIGSVEPVTEQMWVYDTETESMVQREISFVPGLYKIFDEILVNAADNKQRDPTMNCIKI 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12498.2110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000A2A80C73.860e-3675.00DNA topoisomerase 2-alpha-like n=1 Tax=Exaiptasia ... [more]
A0A7S3XY11_HETAK6.870e-3675.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2U9L6_9STRA1.840e-3472.50Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A161TEZ0_TRIIF6.580e-3368.67DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1... [more]
A0A835QN40_VANPL7.290e-3372.50HATPase_c domain-containing protein n=1 Tax=Vanill... [more]
A0A4P1R8Y0_LUPAN9.590e-3375.00DNA topoisomerase 2 n=3 Tax=Lupinus TaxID=3869 Rep... [more]
A0A6P4BXN6_ARADU1.790e-3276.25DNA topoisomerase 2 n=5 Tax=Arachis TaxID=3817 Rep... [more]
B9RVN2_RICCO1.790e-3275.00DNA topoisomerase II, putative n=1 Tax=Ricinus com... [more]
A0A2K3NUV4_TRIPR2.220e-3271.25DNA topoisomerase 2-like protein n=1 Tax=Trifolium... [more]
T1HFP6_RHOPR2.460e-3268.75DNA topoisomerase 2 n=1 Tax=Rhodnius prolixus TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12498contigH-canaliculatus_F_contig12498:591..1345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.5e-32
Seed eggNOG ortholog2880.D7G0Y6
Preferred nameTOP2
KEGG koko:K03164
KEGG Pathwayko01524,map01524
EggNOG free text desc.DNA topoisomerase type II (ATP-hydrolyzing) activity
EggNOG OGsCOG0187@1,KOG0355@2759
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.6063342-CDS-H-canaliculatus_F_contig12498:590..7901622928964.6063342-CDS-H-canaliculatus_F_contig12498:590..790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12498 591..790 -
1696845632.373406-CDS-H-canaliculatus_F_contig12498:590..7901696845632.373406-CDS-H-canaliculatus_F_contig12498:590..790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12498 591..790 -
1622928964.622021-CDS-H-canaliculatus_F_contig12498:1278..13451622928964.622021-CDS-H-canaliculatus_F_contig12498:1278..1345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12498 1279..1345 -
1696845632.3844137-CDS-H-canaliculatus_F_contig12498:1278..13451696845632.3844137-CDS-H-canaliculatus_F_contig12498:1278..1345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12498 1279..1345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12498.2110.1prot_H-canaliculatus_F_contig12498.2110.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12498 591..1345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12498.2110.1

>prot_H-canaliculatus_F_contig12498.2110.1 ID=prot_H-canaliculatus_F_contig12498.2110.1|Name=mRNA_H-canaliculatus_F_contig12498.2110.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=89bp
TVEQRYQKKTQLEHILLRPDTYIGSIEKLTQDMWVYDDATNSIVKRMVTY
VPGLYKIFDEIIVNAADNKQRDANMSKLKVRTSGVRLR*
back to top

mRNA from alignment at H-canaliculatus_F_contig12498:591..1345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12498.2110.1 ID=mRNA_H-canaliculatus_F_contig12498.2110.1|Name=mRNA_H-canaliculatus_F_contig12498.2110.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=755bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12498:591..1345- (Hapterophycus canaliculatus Oshoro5f female)
ACGGTGGAGCAGAGGTACCAGAAGAAGACGCAGCTCGAGCACATCCTTCT GCGCCCGGACACTTACAGTGAGTGCCGACCAGAGCAACGACGATTCTTGT TTCGTCTGCGCATGTATGTTGGGGAAGGTCTCTTCATCGGCATGCAACCA CGCCGTTGTCCAAGAGCAGTCGCAGCGGCTTTCCAGGAACGAAGCGTTCT TGGCCCTTTGTCTGCTCGTCTGATCGGTTGGTGCAGCGTGGCACTTGTAG GCCTTGGCTCGCCGCTGAGTTCTGTCGTTTTCGCTAGGATGTATTTTGTA TTTTGGATGTTCGATTTGGTCCAGACCATCTGGCAACCTTGTCGTCGTCG TCGTCGTTGTTGTGAAGGTGTCTTCGTCACAGCTTTGCCGCTGGTGCTGA TTTCACGTCGAGTGACCGGTCCCCAAGCAGGATGCTCAGAGCGACACAGA CTGCCCGAATCGTTGGTGTGTAAAGCGCGGAGCCGCCGCCGCCGTCGTCG AGTCGGGCTTGGTCTGACGTATGCGCCTGTGCTTCTCCGCTTTCCCCATC TCCAGTCGGATCCATCGAGAAGTTGACGCAGGACATGTGGGTCTACGACG ACGCCACCAACAGCATAGTCAAGCGCATGGTGACCTACGTCCCCGGGTTG TACAAGATCTTTGACGAGATCATCGTTAACGCCGCCGACAACAAGCAGCG GGACGCCAACATGTCCAAGCTTAAGGTGCGCACGTCCGGTGTACGGCTTC GCTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12498:591..1345-

>mRNA_H-canaliculatus_F_contig12498.2110.1 ID=mRNA_H-canaliculatus_F_contig12498.2110.1|Name=mRNA_H-canaliculatus_F_contig12498.2110.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12498:591..1345- (Hapterophycus canaliculatus Oshoro5f female)
ACGGTGGAGCAGAGGTACCAGAAGAAGACGCAGCTCGAGCACATCCTTCT
GCGCCCGGACACTTACAACGGTGGAGCAGAGGTACCAGAAGAAGACGCAG
CTCGAGCACATCCTTCTGCGCCCGGACACTTACATCGGATCCATCGAGAA
GTTGACGCAGGACATGTGGGTCTACGACGACGCCACCAACAGCATAGTCA
AGCGCATGGTGACCTACGTCCCCGGGTTGTACAAGATCTTTGACGAGATC
ATCGTTAACGCCGCCGACAACAAGCAGCGGGACGCCAACATGTCCAAGCT
TAAGGTGCGCACGTCCGGTGTACGGCTTCGCTAATCGGATCCATCGAGAA
GTTGACGCAGGACATGTGGGTCTACGACGACGCCACCAACAGCATAGTCA
AGCGCATGGTGACCTACGTCCCCGGGTTGTACAAGATCTTTGACGAGATC
ATCGTTAACGCCGCCGACAACAAGCAGCGGGACGCCAACATGTCCAAGCT
TAAGGTGCGCACGTCCGGTGTACGGCTTCGCTAA
back to top