mRNA_H-canaliculatus_F_contig12494.2109.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12494.2109.1
Unique NamemRNA_H-canaliculatus_F_contig12494.2109.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12494.2109.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 3.390e-69
Identity = 139/280 (49.64%), Postives = 170/280 (60.71%), Query Frame = 1
Query:    1 MDELVHTPMERGQNPDDYFNQKHLLRHRLEKMGETVSDRWFKDICVTGFLPEYKDVKLTMYRDPKFDVQAMQSTMRHMFLDEQSRNSTKNRIAGHGVAMVATAATTNTSDDMECFTCGGRGHKSRQCANNTQRRRGSGGAKKFSNGGGATGKYCQVHRTTRHSDQECYKQRAERPKIDQKEIDQKDENKTATAFSACTKCSH-GSPSDTHSTQATPPAAEKSAATSKDNGNQDKDPIFMYTTGSGGTAREFPPNSSGATLLVDSGASETFFDDALIPGLK 837
            M++L +T ME GQNPDDYFN KHLLRH++EKMGE +SDR+FKD+CVTGF  EYK+VK+ M+RDP F+V  MQ+TM HM LDEQSR  +K  IAG G  MV TA     S+   CF CG +GH  R C     +RRG G  +K +   GAT K+C  H TT++SD+ECY Q A+RP  DQ   D+        AFSAC  C+H  S SD         A+   AA        + D  FMY T    T  E   N+ G TLLV+ GA+ET  DD LIP LK
Sbjct:    1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTA-----SEQETCFGCGEKGHIRRNCL----QRRGKGRQRK-TKPAGAT-KWCCFHFTTKNSDEECYGQGAKRPITDQISTDK--------AFSACAHCAHFSSTSDRKELTTAKEASSTKAAIDSSTDGDESDEGFMYATTR--TGMEVEANAEGVTLLVEIGATETMRDDRLIPHLK 259          
BLAST of mRNA_H-canaliculatus_F_contig12494.2109.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 1.450e-63
Identity = 142/285 (49.82%), Postives = 174/285 (61.05%), Query Frame = 1
Query:    1 MDELVHTPMERGQNPDDYFNQKHLLRHRLEKMGETVSDRWFKDICVTGFLPEYKDVKLTMYRDPKFDVQAMQSTMRHMFLDEQSRNSTKNRIAGHGVAMVATAATTNTSDDMECFTCGGRGHKSRQCANNTQRRRGSGGAKKFSNGGGATGKYCQVHRTTRHSDQECYKQRAERPKIDQKEIDQKDENKTATAFSACTKCSHGSPS--DTHS---TQATPPAAEKSAATSKDNGNQDKDPI---FMY-TTGSGGTAREFPPNSSGATLLVDSGASETFFDDALIP 828
            +D+L  T ME G+NPDD+FN+KH LR +LEKMGET+SDR FKDICV GF  +YKD+K+ ++RDP FDVQ MQ+TMR++FLDEQ R  TK +IAG G AM      T TS  + CF C   GH  R C N    R+  G   K +   GAT K+C VH TT HSD+ECY Q A+RP+            +T  AFSACT C H S    DTH+   T  TP   EK+     D  + D+D     FMY  T S G+ R F   ++G + LVDSGASET FDD LIP
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMA-----TKTSGPI-CFECNEPGHVRRNCPN----RQREGHRAKKTKPAGAT-KWCSVHNTTTHSDEECYNQGAKRPE------------RTGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDF-SYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIP 396          
BLAST of mRNA_H-canaliculatus_F_contig12494.2109.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 2.800e-61
Identity = 145/322 (45.03%), Postives = 175/322 (54.35%), Query Frame = 1
Query:    1 MDELVHTPMERGQNPDDYFNQKHLLRHRLEKMGETVSDRWFKDICVTGFLPEYKDVKLTMYRDPKFDVQAMQSTMRHMFLDEQSRNSTKNRIAGHGVAMVATAATTNTSDDMECFTCGGRGHKSRQCANNTQRRRGSGGAKKFSNGGGATGKYCQVHRTTRHSDQECYKQRAERPKIDQKEIDQKDENKTATAFSACTKCSHG-SPSDTHSTQATPPAAEKSAATSKDNGNQDKDPIFMYTTGSGGTAREFPPNSSGAT------------------------------------------LLVDSGASETFFDDALIPGLK 837
            M+EL++TPME  QNPDDYFNQKHLLRH+ EKMGET+SD +F D CVTGF  EYKDVK+ MYRDP F+V  MQ+TMRHMFLDEQSRN  K  IAG G AM AT     TS++  CF CG +GH  R C+     +RG G  KK +   GA  K+C VH TTRHSD+EC++Q A RPK        K  N T  A SAC  C+H  S S+      T   A  + A    +   + +  FMY     G   +  P ++GAT                                          LL+D+GASE   DD LIPGLK
Sbjct:  116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTAT-----TSEEPTCFDCGEKGHIWRNCSE----KRGKG--KKKTKPAGAA-KWCSVHFTTRHSDEECFEQGATRPK--------KSSN-TGKALSACASCTHCFSTSNKTELAMTKQEASSTQAEIDFSAEGESEEGFMYAIVHKG--EDLKPMATGATPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIDTGASENMLDDCLIPGLK 414          
BLAST of mRNA_H-canaliculatus_F_contig12494.2109.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 4.980e-61
Identity = 139/285 (48.77%), Postives = 171/285 (60.00%), Query Frame = 1
Query:    1 MDELVHTPMERGQNPDDYFNQKHLLRHRLEKMGETVSDRWFKDICVTGFLPEYKDVKLTMYRDPKFDVQAMQSTMRHMFLDEQSRNSTKNRIAGHGVAMVATAATTNTSDDMECFTCGGRGHKSRQCANNTQRRRGSGGAKKFSNGGGATGKYCQVHRTTRHSDQECYKQRAERPKIDQKEIDQKDENKTATAFSACTKCSHGSPSDTHSTQATPPAAEKSAATSKDNGNQ-----DKDPI---FMY-TTGSGGTAREFPPNSSGATLLVDSGASETFFDDALIP 828
            +D+L  T ME G+NPDD+FN+KH LR +LEKMGET+SDR FKDICV GF  +YKD+K+ ++RDP FDVQ MQ+TMR++FLDEQ R  TK +IAG G AM      T TS  + CF C   GH  R C N    R+  G   K +   GAT K+C VH TT HSD+ECY Q A+RP+            +T  AFSACT C H S + +   QA P   E    T K    +     D+D     FMY  T S G+ R F   ++G + LVDSGASET FDD LIP
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMA-----TKTSGPI-CFECNEPGHVRRNCPN----RQREGHRAKKTKPAGAT-KWCSVHNTTTHSDEECYNQGAKRPE------------RTGKAFSACTHCVHCS-TQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIP 396          
BLAST of mRNA_H-canaliculatus_F_contig12494.2109.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 7.720e-61
Identity = 138/284 (48.59%), Postives = 174/284 (61.27%), Query Frame = 1
Query:    1 MDELVHTPMERGQNPDDYFNQKHLLRHRLEKMGETVSDRWFKDICVTGFLPEYKDVKLTMYRDPKFDVQAMQSTMRHMFLDEQSRNSTKNRIAGHGVAMVATAATTNTSDDMECFTCGGRGHKSRQCANNTQRRRGSGGAKKFSNGGGATGKYCQVHRTTRHSDQECYKQRAERPKIDQKEIDQKDENKTATAFSACTKCSHGSPS--DTHSTQATPPAAEKSAATSKD--NGNQDKDPI---FMY-TTGSGGTAREFPPNSSGATLLVDSGASETFFDDALIP 828
            +D+L  T ME G+NPDD+FN+KH LR +LEKMGET+SDR FKDICV GF  +YKD+K+ ++RDP FDVQ MQ+TMR++FLDEQ R  TK +IAG G AM      T TS  + CF C   GH  R C N    R+  G   K +   GAT K+C VH TT HSD+ECY Q A+RP+            +T  AFSACT C H S    DTH+   T    +++  T K   + + D+D     FMY  T S G+ R F   ++G + LVDSGASET FD+ LIP
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMA-----TKTSGPI-CFECNEPGHVRRNCPN----RQREGHRAKKTKPAGAT-KWCSVHNTTTHSDEECYNQGAKRPE------------RTGKAFSACTHCVHCSTQSRDTHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIP 396          
BLAST of mRNA_H-canaliculatus_F_contig12494.2109.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 1.170e-60
Identity = 137/284 (48.24%), Postives = 171/284 (60.21%), Query Frame = 1
Query:    1 MDELVHTPMERGQNPDDYFNQKHLLRHRLEKMGETVSDRWFKDICVTGFLPEYKDVKLTMYRDPKFDVQAMQSTMRHMFLDEQSRNSTKNRIAGHGVAMVATAATTNTSDDMECFTCGGRGHKSRQCANNTQRRRGSGGAKKFSNGGGATGKYCQVHRTTRHSDQECYKQRAERPKIDQKEIDQKDENKTATAFSACTKCSHGSPS--DTHS--TQATPPAAEKSAATSKDNGNQDKDPI---FMY-TTGSGGTAREFPPNSSGATLLVDSGASETFFDDALIP 828
            +D+L  T ME G+NPDD+FN+KH LR +LEKMGET+SDR FKDICV GF  +YKD+K+ ++RDP FDVQ MQ+TMR++FLDEQ R  TK +IAG   AM      T TS  + CF C   GH  R C N    R+  G   K +   GAT K+C VH TT HSD+ECY Q A+RP+            +T   FSACT C H S    DTH+  T   PP   +    ++   + D+D     FMY  T S G+ R F   ++G + LVDSGASET FDD LIP
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRVFAMA-----TKTSGPI-CFECNEPGHVRRNCPN----RQREGHRAKKTKPAGAT-KWCSVHNTTTHSDEECYNQGAKRPE------------RTGKTFSACTNCVHCSTQTGDTHAKPTITEPPKETEKTEKAEIGFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIP 396          
BLAST of mRNA_H-canaliculatus_F_contig12494.2109.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.200e-60
Identity = 134/276 (48.55%), Postives = 162/276 (58.70%), Query Frame = 1
Query:    1 MDELVHTPMERGQNPDDYFNQKHLLRHRLEKMGETVSDRWFKDICVTGFLPEYKDVKLTMYRDPKFDVQAMQSTMRHMFLDEQSRNSTKNRIAGHGVAMVATAATTNTSDDMECFTCGGRGHKSRQCANNTQRRRGSGGAKKFSNGGGATGKYCQVHRTTRHSDQECYKQRAERPKIDQKEIDQKDENKTATAFSACTKCSHGSPSDTHSTQATPPAAEKSAATSKDNGNQDKDPIFMYTTGSGGTAREFPPNSSGATLLVDSGASETFFDDALIP 828
            M+EL + PM  G+NPDDYFNQKHLLR +L+KMGE +SDR FKDICV GF  EYKDVKL ++RDP F+V  M STMR++FLDEQSR   K RIAG G AM  TA+      D+ C +C   GH  R C     R      AKK +   GAT K+C  H TT HSD+ECY+Q  +RP+      D KD NK  TA S CT CS  S  D  + +         A           D  FM+ T S  + R F  +S+G  L+VDS ASET FD+ LIP
Sbjct:  156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTAS------DIICHSCYEPGHIRRNCPKIKNR------AKKKTKPAGAT-KWCSKHNTTSHSDEECYQQGGKRPE------DTKDSNKVFTACSNCTHCSSASKKDDSNNEV--------AVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIP 404          
BLAST of mRNA_H-canaliculatus_F_contig12494.2109.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 2.450e-60
Identity = 138/285 (48.42%), Postives = 171/285 (60.00%), Query Frame = 1
Query:    1 MDELVHTPMERGQNPDDYFNQKHLLRHRLEKMGETVSDRWFKDICVTGFLPEYKDVKLTMYRDPKFDVQAMQSTMRHMFLDEQSRNSTKNRIAGHGVAMVATAATTNTSDDMECFTCGGRGHKSRQCANNTQRRRGSGGAKKFSNGGGATGKYCQVHRTTRHSDQECYKQRAERPKIDQKEIDQKDENKTATAFSACTKCSHGSPSDTHSTQATPPAAEKSAATSKDNGNQ-----DKDPI---FMY-TTGSGGTAREFPPNSSGATLLVDSGASETFFDDALIP 828
            +D+L  T ME G+NPDD+FN+KH LR +LEKMGET+SDR FKDICV GF  +YKD+K+ ++RDP FDVQ MQ+TMR++FLDEQ R  TK +IAG G AM      T TS  + CF C   GH  R C N    R+  G   K +   GAT K+C VH TT HSD+ECY Q A+RP+            +T  AFSACT C H S + +   QA P   E    T K    +     D+D     FMY  T S G+ R F   ++G + LVDSGASET FD+ LIP
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMA-----TKTSGPI-CFECNEPGHVRRNCPN----RQREGHRAKKTKPAGAT-KWCSVHNTTTHSDEECYNQGAKRPE------------RTGKAFSACTHCVHCS-TQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIP 396          
BLAST of mRNA_H-canaliculatus_F_contig12494.2109.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 2.860e-60
Identity = 137/284 (48.24%), Postives = 173/284 (60.92%), Query Frame = 1
Query:    1 MDELVHTPMERGQNPDDYFNQKHLLRHRLEKMGETVSDRWFKDICVTGFLPEYKDVKLTMYRDPKFDVQAMQSTMRHMFLDEQSRNSTKNRIAGHGVAMVATAATTNTSDDMECFTCGGRGHKSRQCANNTQRRRGSGGAKKFSNGGGATGKYCQVHRTTRHSDQECYKQRAERPKIDQKEIDQKDENKTATAFSACTKCSHGSPS--DTHSTQATPPAAEKSAATSKD--NGNQDKDPI---FMY-TTGSGGTAREFPPNSSGATLLVDSGASETFFDDALIP 828
            +D+L  T ME G+NPDD+FN+KH LR +LEKMGET+SDR FKDICV GF  +YKD+K+ ++RDP FDVQ MQ+TMR++FLDEQ R  TK +IAG G AM      T TS  + CF C   GH  R C N    R+  G   K +   GAT K+C VH TT HSD+ECY Q A+RP+            +T  AFSACT C H S    D H+   T    +++  T K   + + D+D     FMY  T S G+ R F   ++G + LVDSGASET FD+ LIP
Sbjct:  155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMA-----TKTSGPI-CFECNEPGHVRRNCPN----RQREGHRAKKTKPAGAT-KWCSVHNTTTHSDEECYNQGAKRPE------------RTGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIP 415          
BLAST of mRNA_H-canaliculatus_F_contig12494.2109.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 3.620e-60
Identity = 138/285 (48.42%), Postives = 171/285 (60.00%), Query Frame = 1
Query:    1 MDELVHTPMERGQNPDDYFNQKHLLRHRLEKMGETVSDRWFKDICVTGFLPEYKDVKLTMYRDPKFDVQAMQSTMRHMFLDEQSRNSTKNRIAGHGVAMVATAATTNTSDDMECFTCGGRGHKSRQCANNTQRRRGSGGAKKFSNGGGATGKYCQVHRTTRHSDQECYKQRAERPKIDQKEIDQKDENKTATAFSACTKCSHGSPSDTHSTQATPPAAEKSAATSKDNGNQ-----DKDPI---FMY-TTGSGGTAREFPPNSSGATLLVDSGASETFFDDALIP 828
            +D+L  T ME G+NPDD+FN+KH LR +LEKMGET+SDR FKDICV GF  +YKD+K+ ++RDP FDVQ MQ+TMR++FLDEQ R  TK +IAG G AM      T TS  + CF C   GH  R C N    R+  G   K +   GAT K+C VH TT HSD+ECY Q A+RP+            +T  AFSACT C H S + +   QA P   E    T K    +     D+D     FMY  T S G+ R F   ++G + LVDSGASET FD+ LIP
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMA-----TKTSGPI-CFECNEPGHVRRNCPN----RQREGHRAKKTKPAGAT-KWCSVHNTTTHSDEECYNQGAKRPE------------RTGKAFSACTHCVHCS-TQSRDIQAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIP 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12494.2109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Q1_ECTSI3.390e-6949.64CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJB9_9PHAE1.450e-6349.82Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KW66_9PHAE2.800e-6145.03CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K3T5_9PHAE4.980e-6148.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTQ0_9PHAE7.720e-6148.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4S9_9PHAE1.170e-6048.24CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L580_9PHAE1.200e-6048.55CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L1Z9_9PHAE2.450e-6048.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN9_9PHAE2.860e-6048.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG5_9PHAE3.620e-6048.42Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12494contigH-canaliculatus_F_contig12494:1356..2324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size837
Cds size837
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.5384405-CDS-H-canaliculatus_F_contig12494:1355..15261622928964.5384405-CDS-H-canaliculatus_F_contig12494:1355..1526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12494 1356..1526 -
1696845632.3541594-CDS-H-canaliculatus_F_contig12494:1355..15261696845632.3541594-CDS-H-canaliculatus_F_contig12494:1355..1526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12494 1356..1526 -
1622928964.5539336-CDS-H-canaliculatus_F_contig12494:1658..23241622928964.5539336-CDS-H-canaliculatus_F_contig12494:1658..2324Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12494 1659..2324 -
1696845632.3638108-CDS-H-canaliculatus_F_contig12494:1658..23241696845632.3638108-CDS-H-canaliculatus_F_contig12494:1658..2324Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12494 1659..2324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12494.2109.1prot_H-canaliculatus_F_contig12494.2109.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12494 1356..2324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12494.2109.1

>prot_H-canaliculatus_F_contig12494.2109.1 ID=prot_H-canaliculatus_F_contig12494.2109.1|Name=mRNA_H-canaliculatus_F_contig12494.2109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=279bp
MDELVHTPMERGQNPDDYFNQKHLLRHRLEKMGETVSDRWFKDICVTGFL
PEYKDVKLTMYRDPKFDVQAMQSTMRHMFLDEQSRNSTKNRIAGHGVAMV
ATAATTNTSDDMECFTCGGRGHKSRQCANNTQRRRGSGGAKKFSNGGGAT
GKYCQVHRTTRHSDQECYKQRAERPKIDQKEIDQKDENKTATAFSACTKC
SHGSPSDTHSTQATPPAAEKSAATSKDNGNQDKDPIFMYTTGSGGTAREF
PPNSSGATLLVDSGASETFFDDALIPGLK
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mRNA from alignment at H-canaliculatus_F_contig12494:1356..2324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12494.2109.1 ID=mRNA_H-canaliculatus_F_contig12494.2109.1|Name=mRNA_H-canaliculatus_F_contig12494.2109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=969bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12494:1356..2324- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGAACTAGTGCACACCCCGATGGAGCGGGGGCAGAACCCAGACGA CTACTTCAATCAGAAACATCTGCTCCGCCACAGACTCGAGAAAATGGGGG AAACTGTCTCCGACCGCTGGTTCAAAGACATCTGCGTCACCGGTTTTCTT CCGGAATACAAGGACGTCAAGTTGACCATGTATCGGGACCCGAAATTCGA CGTCCAAGCCATGCAATCTACTATGCGACACATGTTCCTCGACGAGCAGT CGCGCAACTCAACGAAGAATCGGATCGCTGGACACGGAGTTGCCATGGTC GCTACTGCCGCCACAACCAACACCAGCGACGACATGGAATGCTTTACCTG CGGAGGTCGAGGACACAAATCGAGACAGTGTGCGAACAACACCCAGCGCC GGCGTGGTTCGGGAGGAGCGAAGAAGTTCAGCAACGGCGGAGGAGCAACC GGAAAATACTGCCAAGTTCACCGCACCACCCGGCACAGCGACCAAGAATG CTACAAGCAAAGAGCTGAACGCCCGAAAATCGACCAGAAGGAAATCGACC AGAAGGATGAGAACAAGACTGCCACCGCCTTCTCCGCTTGCACGAAATGC TCTCACGGCTCCCCAAGTGACACGCATTCGACACAAGCAACGCCGCCGGC TGCCGAGAAATCGGCTGTGGACTTCACCCACAGCACGACAGACTTCGACG GCGGATTCATCTATGCTACCACAGCCGTCCCGGGGCCATTCGAACGACCT GCGAGCGCCACTTGTTCCTCGTTTTCCGCAACGACCCAATCTTTGGAGGC TACTTCGAAGGACAACGGCAATCAAGATAAAGATCCGATCTTCATGTACA CCACAGGATCAGGGGGCACGGCACGAGAATTTCCACCCAACTCCAGCGGC GCAACACTCCTAGTCGACTCCGGGGCATCAGAGACATTCTTCGACGATGC ACTCATCCCAGGCCTGAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12494:1356..2324-

>mRNA_H-canaliculatus_F_contig12494.2109.1 ID=mRNA_H-canaliculatus_F_contig12494.2109.1|Name=mRNA_H-canaliculatus_F_contig12494.2109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1674bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12494:1356..2324- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGAACTAGTGCACACCCCGATGGAGCGGGGGCAGAACCCAGACGA
CTACTTCAATCAGAAACATCTGCTCCGCCACAGACTCGAGAAAATGGGGG
AAACTGTCTCCGACCGCTGGTTCAAAGACATCTGCGTCACCGGTTTTCTT
CCGGAATACAAGGACGTCAAGTTGACCATGTATCGGGACCCGAAATTCGA
CGTCCAAGCCATGCAATCTACTATGCGACACATGTTCCTCGACGAGCAGT
CGCGCAACTCAACGAAGAATCGGATCGCTGGACACGGAGTTGCCATGGTC
GCTACTGCCGCCACAACCAACACCAGCGACGACATGGAATGCTTTACCTG
CGGAGGTCGAGGACACAAATCGAGACAGTGTGCGAACAACACCCAGCGCC
GGCGTGGTTCGGGAGGAGCGAAGAAGTTCAGCAACGGCGGAGGAGCAACC
GGAAAATACTGCCAAGTTCACCGCACCACCCGGCACAGCGACCAAGAATG
CTACAAGCAAAGAGCTGAACGCCCGAAAATCGACCAGAAGGAAATCGACC
AGAAGGATGAGAACAAGACTGCCACCGCCTTCTCCGCTTGCACGAAATGC
TCTCACGGCTCCCCAAGTGACACGCATTCGACACAAGCAACGCCGCCGGC
TGCCGAGAAATCGGCTATGGACGAACTAGTGCACACCCCGATGGAGCGGG
GGCAGAACCCAGACGACTACTTCAATCAGAAACATCTGCTCCGCCACAGA
CTCGAGAAAATGGGGGAAACTGTCTCCGACCGCTGGTTCAAAGACATCTG
CGTCACCGGTTTTCTTCCGGAATACAAGGACGTCAAGTTGACCATGTATC
GGGACCCGAAATTCGACGTCCAAGCCATGCAATCTACTATGCGACACATG
TTCCTCGACGAGCAGTCGCGCAACTCAACGAAGAATCGGATCGCTGGACA
CGGAGTTGCCATGGTCGCTACTGCCGCCACAACCAACACCAGCGACGACA
TGGAATGCTTTACCTGCGGAGGTCGAGGACACAAATCGAGACAGTGTGCG
AACAACACCCAGCGCCGGCGTGGTTCGGGAGGAGCGAAGAAGTTCAGCAA
CGGCGGAGGAGCAACCGGAAAATACTGCCAAGTTCACCGCACCACCCGGC
ACAGCGACCAAGAATGCTACAAGCAAAGAGCTGAACGCCCGAAAATCGAC
CAGAAGGAAATCGACCAGAAGGATGAGAACAAGACTGCCACCGCCTTCTC
CGCTTGCACGAAATGCTCTCACGGCTCCCCAAGTGACACGCATTCGACAC
AAGCAACGCCGCCGGCTGCCGAGAAATCGGCTGCTACTTCGAAGGACAAC
GGCAATCAAGATAAAGATCCGATCTTCATGTACACCACAGGATCAGGGGG
CACGGCACGAGAATTTCCACCCAACTCCAGCGGCGCAACACTCCTAGTCG
ACTCCGGGGCATCAGAGACATTCTTCGACGATGCACTCATCCCAGGCCTG
AAAGCTACTTCGAAGGACAACGGCAATCAAGATAAAGATCCGATCTTCAT
GTACACCACAGGATCAGGGGGCACGGCACGAGAATTTCCACCCAACTCCA
GCGGCGCAACACTCCTAGTCGACTCCGGGGCATCAGAGACATTCTTCGAC
GATGCACTCATCCCAGGCCTGAAA
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