mRNA_H-canaliculatus_F_contig12492.2108.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12492.2108.1
Unique NamemRNA_H-canaliculatus_F_contig12492.2108.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12492.2108.1 vs. uniprot
Match: D8LK05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK05_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 5.810e-54
Identity = 95/109 (87.16%), Postives = 101/109 (92.66%), Query Frame = 1 
Query:    4 EQVLKSFSKLCPSSSLVNRDGETKELDSLDLVMGDVVILKAGDKIPADVRFIWCNSTMVDNSSLTGESAPLKRSATARTDSPREAENMGYFGTTLVQGDAVGVVIRTGD 330
            E+VLKSFSKLCPSSSLVNR GET E+DS +LVMGDVV LKAGDKIPAD+RFIWCNS  VDNSSLTGESAPLKR+ATARTDS REAENMG+FGTTLVQG AVGVVIRTGD
Sbjct:   40 EKVLKSFSKLCPSSSLVNRGGETLEIDSTELVMGDVVTLKAGDKIPADLRFIWCNSATVDNSSLTGESAPLKRTATARTDSSREAENMGFFGTTLVQGSAVGVVIRTGD 148
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BLAST of mRNA_H-canaliculatus_F_contig12492.2108.1 vs. uniprot
Match: A0A6H5JGR4_9PHAE (Cation_ATPase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR4_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.120e-52
Identity = 92/109 (84.40%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:    4 EQVLKSFSKLCPSSSLVNRDGETKELDSLDLVMGDVVILKAGDKIPADVRFIWCNSTMVDNSSLTGESAPLKRSATARTDSPREAENMGYFGTTLVQGDAVGVVIRTGD 330
            E+VLKSFSKLCPSSSLVNR GET E+DS +LVMGDVV LKAGDKIPAD+RFIWCN   VDNSSLTGESAPLKR+ATARTD+ REAENMG+FGTTLVQG A+GVVIRTGD
Sbjct:  286 EKVLKSFSKLCPSSSLVNRGGETLEVDSTELVMGDVVTLKAGDKIPADIRFIWCNGATVDNSSLTGESAPLKRTATARTDNSREAENMGFFGTTLVQGSALGVVIRTGD 394
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BLAST of mRNA_H-canaliculatus_F_contig12492.2108.1 vs. uniprot
Match: F0ZJJ8_DICPU (Cation_ATPase_N domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZJJ8_DICPU)

HSP 1 Score: 122 bits (307), Expect = 3.630e-30
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:   10 VLKSFSKLCPSSSLVNRDGETKELDSLDLVMGDVVILKAGDKIPADVRFIWCNSTMVDNSSLTGESAPLKRSATARTDSPREAENMGYFGTTLVQGDAVGVVIRTGDRCV 339
            V++ F KL PSS+ V RDG   E+DS DLV+GD+VI++AGDK+PAD+R +  +   VDNSSLTGE+ P  RS T   ++P E +N+ ++GT   QGD VGVVI TGDR V
Sbjct:  332 VMEGFKKLAPSSTKVLRDGNLIEIDSEDLVVGDIVIVRAGDKVPADLRVVLSHHFKVDNSSLTGETEPQTRSVTCTDENPLETQNLVFYGTLACQGDCVGVVIATGDRTV 441
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BLAST of mRNA_H-canaliculatus_F_contig12492.2108.1 vs. uniprot
Match: A0A672V6X7_STRHB (Sodium/potassium-transporting ATPase subunit alpha n=1 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672V6X7_STRHB)

HSP 1 Score: 119 bits (298), Expect = 5.900e-29
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   10 VLKSFSKLCPSSSLVNRDGETKELDSLDLVMGDVVILKAGDKIPADVRFIWCNSTMVDNSSLTGESAPLKRSATARTDSPREAENMGYFGTTLVQGDAVGVVIRTGDRCV 339
            ++ SFSK+ P  +LV RDGE KEL +  LV+GDVV +K GDKIPAD+R I+     VDNSSLTGES P  RS     ++P E  N+ ++ TT V+G A G+VI TGDR +
Sbjct:  168 IMASFSKMIPQQALVIRDGEKKELPADQLVVGDVVEIKGGDKIPADIRLIFAQGCKVDNSSLTGESEPQSRSCDFTHENPLETRNIAFYSTTCVEGTATGIVINTGDRTI 277
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BLAST of mRNA_H-canaliculatus_F_contig12492.2108.1 vs. uniprot
Match: A0A672V732_STRHB (Sodium/potassium-transporting ATPase subunit alpha n=4 Tax=Neognathae TaxID=8825 RepID=A0A672V732_STRHB)

HSP 1 Score: 119 bits (298), Expect = 5.910e-29
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   10 VLKSFSKLCPSSSLVNRDGETKELDSLDLVMGDVVILKAGDKIPADVRFIWCNSTMVDNSSLTGESAPLKRSATARTDSPREAENMGYFGTTLVQGDAVGVVIRTGDRCV 339
            ++ SFSK+ P  +LV RDGE KEL +  LV+GDVV +K GDKIPAD+R I+     VDNSSLTGES P  RS     ++P E  N+ ++ TT V+G A G+VI TGDR +
Sbjct:  160 IMASFSKMIPQQALVIRDGEKKELPADQLVVGDVVEIKGGDKIPADIRLIFAQGCKVDNSSLTGESEPQSRSCDFTHENPLETRNIAFYSTTCVEGTATGIVINTGDRTI 269
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BLAST of mRNA_H-canaliculatus_F_contig12492.2108.1 vs. uniprot
Match: A0A672V6F8_STRHB (Sodium/potassium-transporting ATPase subunit alpha n=3 Tax=Neognathae TaxID=8825 RepID=A0A672V6F8_STRHB)

HSP 1 Score: 119 bits (298), Expect = 5.920e-29
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   10 VLKSFSKLCPSSSLVNRDGETKELDSLDLVMGDVVILKAGDKIPADVRFIWCNSTMVDNSSLTGESAPLKRSATARTDSPREAENMGYFGTTLVQGDAVGVVIRTGDRCV 339
            ++ SFSK+ P  +LV RDGE KEL +  LV+GDVV +K GDKIPAD+R I+     VDNSSLTGES P  RS     ++P E  N+ ++ TT V+G A G+VI TGDR +
Sbjct:  211 IMASFSKMIPQQALVIRDGEKKELPADQLVVGDVVEIKGGDKIPADIRLIFAQGCKVDNSSLTGESEPQSRSCDFTHENPLETRNIAFYSTTCVEGTATGIVINTGDRTI 320
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BLAST of mRNA_H-canaliculatus_F_contig12492.2108.1 vs. uniprot
Match: Q55FW3_DICDI (P-type ATPase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55FW3_DICDI)

HSP 1 Score: 117 bits (293), Expect = 2.800e-28
Identity = 59/110 (53.64%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:   10 VLKSFSKLCPSSSLVNRDGETKELDSLDLVMGDVVILKAGDKIPADVRFIWCNSTMVDNSSLTGESAPLKRSATARTDSPREAENMGYFGTTLVQGDAVGVVIRTGDRCV 339
            V++ F KL PSS+ V RD    E+DS DLV+GDVVI++AGDK+PAD+R I  +   VDN+SLTGE+ P  RS     ++P E +N+ ++GT   QGD VGVVI TGDR V
Sbjct:  253 VMEGFKKLAPSSTKVLRDDNLIEIDSEDLVVGDVVIVRAGDKVPADLRVIASHHFKVDNASLTGETEPQTRSPNCTDENPLETQNLTFYGTLACQGDCVGVVIATGDRTV 362
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BLAST of mRNA_H-canaliculatus_F_contig12492.2108.1 vs. uniprot
Match: A0A8J4V4F2_9MYCE (Cation_ATPase_N domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V4F2_9MYCE)

HSP 1 Score: 117 bits (293), Expect = 2.810e-28
Identity = 56/108 (51.85%), Postives = 76/108 (70.37%), Query Frame = 1 
Query:   10 VLKSFSKLCPSSSLVNRDGETKELDSLDLVMGDVVILKAGDKIPADVRFIWCNSTMVDNSSLTGESAPLKRSATARTDSPREAENMGYFGTTLVQGDAVGVVIRTGDR 333
            V++ F KL  SS+ V RDG+  E+DS  LV+GD+V+++AGDKIPAD+R I  N   VDNSSLTGES P  R+     ++P E +N+ ++GT    GDA+GV+I TGDR
Sbjct:  284 VMEGFKKLASSSTKVIRDGQLIEIDSEILVVGDIVVIRAGDKIPADIRIILSNHLKVDNSSLTGESEPQTRTPNCTDENPLETQNLAFYGTLACAGDAIGVIIATGDR 391
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BLAST of mRNA_H-canaliculatus_F_contig12492.2108.1 vs. uniprot
Match: A0A1S8VMU3_9FUNG (Cation_ATPase_N domain-containing protein (Fragment) n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VMU3_9FUNG)

HSP 1 Score: 113 bits (283), Expect = 3.540e-28
Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    4 EQVLKSFSKLCPSSSLVNRDGETKELDSLDLVMGDVVILKAGDKIPADVRFIWCNSTMVDNSSLTGESAPLKRSATARTDSPREAENMGYFGTTLVQGDAVGVVIRTGDRCV 339
            + +L+SF  L PS     RD +  ++ +++LV+GDVV +K+GDKIPAD+R  W N   VDNSSLTGE+ P +R A     +P EA N+ + GT +V GDA G+V+RTGD  V
Sbjct:  153 QAILESFLNLIPSKCYAIRDAKLAQISAMELVLGDVVFIKSGDKIPADLRIFWANELKVDNSSLTGEAEPQERVAKNVMTNPLEATNLVFNGTLVVNGDAYGIVVRTGDNTV 264
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BLAST of mRNA_H-canaliculatus_F_contig12492.2108.1 vs. uniprot
Match: A0A1S8VSA5_9FUNG (Cation_ATPase_N domain-containing protein (Fragment) n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VSA5_9FUNG)

HSP 1 Score: 114 bits (286), Expect = 6.580e-28
Identity = 55/112 (49.11%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    4 EQVLKSFSKLCPSSSLVNRDGETKELDSLDLVMGDVVILKAGDKIPADVRFIWCNSTMVDNSSLTGESAPLKRSATARTDSPREAENMGYFGTTLVQGDAVGVVIRTGDRCV 339
            + +L+SF  L PS     RD +  ++ +++LV+GDVV +K+GDKIPAD+R  W N   VDNSSLTGE+ P +R A     SP EA N+ + GT +V GDA G+V+RTGD  V
Sbjct:  142 QAILESFLNLIPSKCYAIRDAKLAQISAMELVLGDVVFIKSGDKIPADLRIFWANELKVDNSSLTGEAEPQERVAKNVMTSPLEATNLVFNGTLVVNGDAYGIVVRTGDNTV 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12492.2108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK05_ECTSI5.810e-5487.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGR4_9PHAE1.120e-5284.40Cation_ATPase_N domain-containing protein n=1 Tax=... [more]
F0ZJJ8_DICPU3.630e-3054.55Cation_ATPase_N domain-containing protein n=1 Tax=... [more]
A0A672V6X7_STRHB5.900e-2952.73Sodium/potassium-transporting ATPase subunit alpha... [more]
A0A672V732_STRHB5.910e-2952.73Sodium/potassium-transporting ATPase subunit alpha... [more]
A0A672V6F8_STRHB5.920e-2952.73Sodium/potassium-transporting ATPase subunit alpha... [more]
Q55FW3_DICDI2.800e-2853.64P-type ATPase n=1 Tax=Dictyostelium discoideum Tax... [more]
A0A8J4V4F2_9MYCE2.810e-2851.85Cation_ATPase_N domain-containing protein n=1 Tax=... [more]
A0A1S8VMU3_9FUNG3.540e-2848.21Cation_ATPase_N domain-containing protein (Fragmen... [more]
A0A1S8VSA5_9FUNG6.580e-2849.11Cation_ATPase_N domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12492contigH-canaliculatus_F_contig12492:2722..3532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue1.3e-46
Seed eggNOG ortholog2880.D8LK05
KEGG koko:K01539,ko:K01544
KEGG TC3.A.3.1,3.A.3.1.4
KEGG Pathwayko00190,ko04022,ko04024,ko04260,ko04261,ko04911,ko04918,ko04919,ko04925,ko04960,ko04961,ko04964,ko04970,ko04971,ko04972,ko04973,ko04974,ko04976,ko04978,map00190,map04022,map04024,map04260,map04261,map04911,map04918,map04919,map04925,map04960,map04961,map04964,map04970,map04971,map04972,map04973,map04974,map04976,map04978
EggNOG free text desc.sodium:potassium-exchanging ATPase activity
EggNOG OGsCOG0474@1,KOG0203@2759
EC3.6.3.10,3.6.3.9
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.4663365-CDS-H-canaliculatus_F_contig12492:2721..28431622928964.4663365-CDS-H-canaliculatus_F_contig12492:2721..2843Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12492 2722..2843 +
1696845632.3305588-CDS-H-canaliculatus_F_contig12492:2721..28431696845632.3305588-CDS-H-canaliculatus_F_contig12492:2721..2843Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12492 2722..2843 +
1622928964.4915602-CDS-H-canaliculatus_F_contig12492:3315..35321622928964.4915602-CDS-H-canaliculatus_F_contig12492:3315..3532Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12492 3316..3532 +
1696845632.3425815-CDS-H-canaliculatus_F_contig12492:3315..35321696845632.3425815-CDS-H-canaliculatus_F_contig12492:3315..3532Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12492 3316..3532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12492.2108.1prot_H-canaliculatus_F_contig12492.2108.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12492 2722..3532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12492.2108.1

>prot_H-canaliculatus_F_contig12492.2108.1 ID=prot_H-canaliculatus_F_contig12492.2108.1|Name=mRNA_H-canaliculatus_F_contig12492.2108.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
LEQVLKSFSKLCPSSSLVNRDGETKELDSLDLVMGDVVILKAGDKIPADV
RFIWCNSTMVDNSSLTGESAPLKRSATARTDSPREAENMGYFGTTLVQGD
AVGVVIRTGDRCV
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mRNA from alignment at H-canaliculatus_F_contig12492:2722..3532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12492.2108.1 ID=mRNA_H-canaliculatus_F_contig12492.2108.1|Name=mRNA_H-canaliculatus_F_contig12492.2108.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=811bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12492:2722..3532+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGAGCAGGTGCTCAAGAGCTTCTCCAAGCTCTGCCCGTCGAGCTCCTT
GGTCAACCGGGACGGAGAGACGAAGGAATTAGACTCGCTCGATCTCGTCA
TGGGGGACGTCGTGATCCTCAAGTGAGAGCTACGGCATGGTGGTGTGTGG
AAGAGTGAAAAACGTTGCCACAGCTGCGGGTGAGAGTGGCGCCGGCGGTT
GTGCTGTGCGCAGCTGTGCCGTTCCTCTATCGGTGTCCGGCGGCCGCGGC
AGCGACTGCCACGACTGTCATTGCCTGCTCCGCTTGCAGATGGGGTTGTT
CACGTGGTGGCGTTTATGCTACGGGGTCGCGTCATGTCCCTCGCTATCGC
CGTAGTGGTAGCTTCGCATCGTGATGTCTGGGTGGGATCTGATTCCCGAC
GAACCCTTTCACAGCAGTGCATGCTCGCCTCCTGAATGCCGCTTCTTCTC
CTCCCGGTCTGCTGACGCGTCGTCGCCGTCGCGCAGCGGTTTGCACGAAA
GCGTTTCGACCGCCAACCACCCGAACCAGACCCCGAGACAGTCCCAGCCG
CATTCGCACTCGCCTGACCCCCCCCCCTCCCCCTTTCGCACCAGGGCCGG
AGACAAGATCCCCGCCGACGTCCGCTTCATCTGGTGCAACTCCACCATGG
TGGACAACTCATCCCTAACGGGAGAGAGCGCGCCCCTTAAGCGGTCTGCC
ACGGCGAGGACGGACAGCCCGAGGGAGGCGGAGAACATGGGGTACTTCGG
CACGACGCTGGTCCAGGGGGACGCCGTCGGGGTCGTGATCCGAACGGGAG
ACAGGTGTGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12492:2722..3532+

>mRNA_H-canaliculatus_F_contig12492.2108.1 ID=mRNA_H-canaliculatus_F_contig12492.2108.1|Name=mRNA_H-canaliculatus_F_contig12492.2108.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12492:2722..3532+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGAGCAGGTGCTCAAGAGCTTCTCCAAGCTCTGCCCGTCGAGCTCCTT
GGTCAACCGGGACGGAGAGACGAAGGAATTAGACTCGCTCGATCTCGTCA
TGGGGGACGTCGTGATCCTCAACTCGAGCAGGTGCTCAAGAGCTTCTCCA
AGCTCTGCCCGTCGAGCTCCTTGGTCAACCGGGACGGAGAGACGAAGGAA
TTAGACTCGCTCGATCTCGTCATGGGGGACGTCGTGATCCTCAAGGCCGG
AGACAAGATCCCCGCCGACGTCCGCTTCATCTGGTGCAACTCCACCATGG
TGGACAACTCATCCCTAACGGGAGAGAGCGCGCCCCTTAAGCGGTCTGCC
ACGGCGAGGACGGACAGCCCGAGGGAGGCGGAGAACATGGGGTACTTCGG
CACGACGCTGGTCCAGGGGGACGCCGTCGGGGTCGTGATCCGAACGGGAG
ACAGGTGTGTGGGCCGGAGACAAGATCCCCGCCGACGTCCGCTTCATCTG
GTGCAACTCCACCATGGTGGACAACTCATCCCTAACGGGAGAGAGCGCGC
CCCTTAAGCGGTCTGCCACGGCGAGGACGGACAGCCCGAGGGAGGCGGAG
AACATGGGGTACTTCGGCACGACGCTGGTCCAGGGGGACGCCGTCGGGGT
CGTGATCCGAACGGGAGACAGGTGTGTG
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