mRNA_H-canaliculatus_F_contig12457.2086.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12457.2086.1
Unique NamemRNA_H-canaliculatus_F_contig12457.2086.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12457.2086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12457contigH-canaliculatus_F_contig12457:1918..2768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size733
Cds size729
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12457.2086.1prot_H-canaliculatus_F_contig12457.2086.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12457 1920..2768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.2394705-UTR-H-canaliculatus_F_contig12457:1917..19191622928961.2394705-UTR-H-canaliculatus_F_contig12457:1917..1919Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12457 1918..1919 +
1696845630.9308844-UTR-H-canaliculatus_F_contig12457:1917..19191696845630.9308844-UTR-H-canaliculatus_F_contig12457:1917..1919Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12457 1918..1919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.2534702-CDS-H-canaliculatus_F_contig12457:1919..20771622928961.2534702-CDS-H-canaliculatus_F_contig12457:1919..2077Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12457 1920..2077 +
1696845630.939745-CDS-H-canaliculatus_F_contig12457:1919..20771696845630.939745-CDS-H-canaliculatus_F_contig12457:1919..2077Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12457 1920..2077 +
1622928961.276733-CDS-H-canaliculatus_F_contig12457:2197..27681622928961.276733-CDS-H-canaliculatus_F_contig12457:2197..2768Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12457 2198..2768 +
1696845630.9484642-CDS-H-canaliculatus_F_contig12457:2197..27681696845630.9484642-CDS-H-canaliculatus_F_contig12457:2197..2768Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12457 2198..2768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12457.2086.1

>prot_H-canaliculatus_F_contig12457.2086.1 ID=prot_H-canaliculatus_F_contig12457.2086.1|Name=mRNA_H-canaliculatus_F_contig12457.2086.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=243bp
MVPRRLRPRKPRQNPLRPALPPSKALTRPSPQPSRRSRLSASPSRPARRR
DQAPVRPRLLLQLLPLLLQLQLLLLLQLLLLPPPLSPLPPPLSPLPPAVA
RRQHRRRPRPRPPRRPRRPRWTERTTAADAWWRGRAVHGRNNSGLFHRVP
CRAERAECGRTLCRYPPTFFSRARPPFFLLLFFCLLVAIAAVRLRYQPRR
EGGTGRKGGLQRPRARSAPSGPLPPSNNGRGSYVEKTDAPQPR
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mRNA from alignment at H-canaliculatus_F_contig12457:1918..2768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12457.2086.1 ID=mRNA_H-canaliculatus_F_contig12457.2086.1|Name=mRNA_H-canaliculatus_F_contig12457.2086.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=851bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12457:1918..2768+ (Hapterophycus canaliculatus Oshoro5f female)
CGATGGTACCCCGTCGCCTCCGTCCGAGAAAGCCAAGGCAGAACCCGCTC
CGGCCGGCCCTGCCACCGAGCAAAGCCTTGACGAGGCCGTCGCCGCAACC
GTCGCGGCGATCGCGGCTCTCAGCAAGCCCGTCCCGTCCGGCGAGAAGGC
GGGATCAGGCGGCGGTACAGGCGGCGGCGGCGGCGGCGGCGTAGGAGAAG
CCGACAGCGCGGCGGCGGCACAGGCCGAGAAACCGTCGCCAGCGGCGGAC
CACGGAGAGGCGGCCGCCGCCGCCGCCGTTGCCGGTGCGGCCGCGTCTGC
TGCTCCAGCTTCTCCCGCTCCTGCTCCAGCTCCAGCTGCTCCTGCTGCTC
CAGCTTCTCCTGCTGCCGCCGCCGCTGTCCCCGCTGCCGCCGCCGCTGTC
CCCGCTGCCGCCGGCGGTAGCTCGGCGACAACACCGGAGACGACCCCGGC
CACGACCACCGCGACGACCACGCCGCCCACGGTGGACTGAGCGAACGACG
GCGGCGGACGCGTGGTGGCGGGGACGAGCCGTCCACGGGCGGAACAACAG
TGGTTTGTTTCACCGCGTGCCGTGCCGTGCCGAGCGGGCGGAGTGCGGGC
GGACGCTGTGCCGGTACCCTCCTACCTTCTTCTCTCGCGCGCGCCCCCCC
TTCTTTCTTCTGCTCTTTTTTTGTCTCCTCGTGGCGATCGCCGCGGTGCG
CCTTCGATATCAGCCGCGGCGGGAGGGCGGGACGGGGCGAAAGGGTGGCC
TGCAGCGTCCGCGGGCTCGGAGCGCGCCGAGCGGGCCTTTGCCGCCTTCG
AACAACGGCAGAGGGAGCTACGTCGAAAAGACGGATGCGCCTCAGCCCCG
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12457:1918..2768+

>mRNA_H-canaliculatus_F_contig12457.2086.1 ID=mRNA_H-canaliculatus_F_contig12457.2086.1|Name=mRNA_H-canaliculatus_F_contig12457.2086.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1458bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12457:1918..2768+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTACCCCGTCGCCTCCGTCCGAGAAAGCCAAGGCAGAACCCGCTCCG
GCCGGCCCTGCCACCGAGCAAAGCCTTGACGAGGCCGTCGCCGCAACCGT
CGCGGCGATCGCGGCTCTCAGCAAGCCCGTCCCGTCCGGCGAGAAGGCGG
GATCAGGCATGGTACCCCGTCGCCTCCGTCCGAGAAAGCCAAGGCAGAAC
CCGCTCCGGCCGGCCCTGCCACCGAGCAAAGCCTTGACGAGGCCGTCGCC
GCAACCGTCGCGGCGATCGCGGCTCTCAGCAAGCCCGTCCCGTCCGGCGA
GAAGGCGGGATCAGGCGCCGGTGCGGCCGCGTCTGCTGCTCCAGCTTCTC
CCGCTCCTGCTCCAGCTCCAGCTGCTCCTGCTGCTCCAGCTTCTCCTGCT
GCCGCCGCCGCTGTCCCCGCTGCCGCCGCCGCTGTCCCCGCTGCCGCCGG
CGGTAGCTCGGCGACAACACCGGAGACGACCCCGGCCACGACCACCGCGA
CGACCACGCCGCCCACGGTGGACTGAGCGAACGACGGCGGCGGACGCGTG
GTGGCGGGGACGAGCCGTCCACGGGCGGAACAACAGTGGTTTGTTTCACC
GCGTGCCGTGCCGTGCCGAGCGGGCGGAGTGCGGGCGGACGCTGTGCCGG
TACCCTCCTACCTTCTTCTCTCGCGCGCGCCCCCCCTTCTTTCTTCTGCT
CTTTTTTTGTCTCCTCGTGGCGATCGCCGCGGTGCGCCTTCGATATCAGC
CGCGGCGGGAGGGCGGGACGGGGCGAAAGGGTGGCCTGCAGCGTCCGCGG
GCTCGGAGCGCGCCGAGCGGGCCTTTGCCGCCTTCGAACAACGGCAGAGG
GAGCTACGTCGAAAAGACGGATGCGCCTCAGCCCCGCGCCGGTGCGGCCG
CGTCTGCTGCTCCAGCTTCTCCCGCTCCTGCTCCAGCTCCAGCTGCTCCT
GCTGCTCCAGCTTCTCCTGCTGCCGCCGCCGCTGTCCCCGCTGCCGCCGC
CGCTGTCCCCGCTGCCGCCGGCGGTAGCTCGGCGACAACACCGGAGACGA
CCCCGGCCACGACCACCGCGACGACCACGCCGCCCACGGTGGACTGAGCG
AACGACGGCGGCGGACGCGTGGTGGCGGGGACGAGCCGTCCACGGGCGGA
ACAACAGTGGTTTGTTTCACCGCGTGCCGTGCCGTGCCGAGCGGGCGGAG
TGCGGGCGGACGCTGTGCCGGTACCCTCCTACCTTCTTCTCTCGCGCGCG
CCCCCCCTTCTTTCTTCTGCTCTTTTTTTGTCTCCTCGTGGCGATCGCCG
CGGTGCGCCTTCGATATCAGCCGCGGCGGGAGGGCGGGACGGGGCGAAAG
GGTGGCCTGCAGCGTCCGCGGGCTCGGAGCGCGCCGAGCGGGCCTTTGCC
GCCTTCGAACAACGGCAGAGGGAGCTACGTCGAAAAGACGGATGCGCCTC
AGCCCCGC
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