mRNA_H-canaliculatus_F_contig12450.2081.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12450.2081.1
Unique NamemRNA_H-canaliculatus_F_contig12450.2081.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12450.2081.1 vs. uniprot
Match: D8LQA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA9_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.120e-33
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 1 
Query:    4 SDLFMLLQFQGVFVMRRLHFVAQVFNVVWCTLVLFSVFQHESVGGIVIGIVVYPVVLIYLACIIRVLSELVISVLLVPSLLAK-QEPGGAGRGGQSVNGGDADLAAYGVSGGDDAGTVV 357
             +LF+   FQG+ + RRLHFV QV+NVVW TLVLF + +  +  GI++ I+VYP+ + Y+AC +R++SEL +SVLL+PSLLAK Q  GG G   + V  GDADLAAYGVSG DDAGT+V
Sbjct:   24 KELFVFRHFQGIVLARRLHFVGQVWNVVWSTLVLFGILREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 142
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BLAST of mRNA_H-canaliculatus_F_contig12450.2081.1 vs. uniprot
Match: A0A6H5L548_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L548_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.240e-31
Identity = 66/119 (55.46%), Postives = 88/119 (73.95%), Query Frame = 1 
Query:    4 SDLFMLLQFQGVFVMRRLHFVAQVFNVVWCTLVLFSVFQHESVGGIVIGIVVYPVVLIYLACIIRVLSELVISVLLVPSLLAK-QEPGGAGRGGQSVNGGDADLAAYGVSGGDDAGTVV 357
             +LF    FQG+ + RRLH+VAQV+NVVW TLVL +VF+  +   I++ I++YP+ + Y+AC +R++SEL +SVLL+PSLLAK Q  GG G   + V  GDADLAAYGVSG D AGT+V
Sbjct:   24 KELFAFRHFQGIVLARRLHYVAQVWNVVWSTLVLSTVFREGNPLAIIVAIIIYPIFVFYMACFLRLMSELTVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDGAGTIV 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12450.2081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQA9_ECTSI1.120e-3357.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L548_9PHAE4.240e-3155.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12450contigH-canaliculatus_F_contig12450:3196..3555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005480.1
Exons1
Model size360
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.8377745-CDS-H-canaliculatus_F_contig12450:3195..35401622928960.8377745-CDS-H-canaliculatus_F_contig12450:3195..3540Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12450 3196..3540 -
1696845630.8032584-CDS-H-canaliculatus_F_contig12450:3195..35401696845630.8032584-CDS-H-canaliculatus_F_contig12450:3195..3540Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12450 3196..3540 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.8893704-UTR-H-canaliculatus_F_contig12450:3540..35551622928960.8893704-UTR-H-canaliculatus_F_contig12450:3540..3555Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12450 3541..3555 -
1696845630.8169405-UTR-H-canaliculatus_F_contig12450:3540..35551696845630.8169405-UTR-H-canaliculatus_F_contig12450:3540..3555Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12450 3541..3555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12450.2081.1prot_H-canaliculatus_F_contig12450.2081.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12450 3196..3540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12450.2081.1

>prot_H-canaliculatus_F_contig12450.2081.1 ID=prot_H-canaliculatus_F_contig12450.2081.1|Name=mRNA_H-canaliculatus_F_contig12450.2081.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
MLLQFQGVFVMRRLHFVAQVFNVVWCTLVLFSVFQHESVGGIVIGIVVYP
VVLIYLACIIRVLSELVISVLLVPSLLAKQEPGGAGRGGQSVNGGDADLA
AYGVSGGDDAGTVV*
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mRNA from alignment at H-canaliculatus_F_contig12450:3196..3555-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12450.2081.1 ID=mRNA_H-canaliculatus_F_contig12450.2081.1|Name=mRNA_H-canaliculatus_F_contig12450.2081.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=360bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12450:3196..3555- (Hapterophycus canaliculatus Oshoro5f female)
CTCTCGGATCTCTTTATGCTTCTGCAGTTCCAAGGCGTCTTCGTGATGCG
GAGACTGCACTTCGTCGCCCAGGTGTTCAACGTCGTGTGGTGTACGCTCG
TCCTGTTCTCGGTGTTCCAGCATGAAAGCGTGGGCGGCATCGTGATCGGC
ATCGTCGTGTATCCGGTCGTCCTGATCTACCTGGCGTGCATCATTCGGGT
CTTGAGCGAGCTCGTTATCTCAGTGCTGCTTGTGCCAAGTCTCCTTGCCA
AGCAGGAGCCAGGGGGAGCGGGGCGGGGAGGGCAGTCCGTGAACGGCGGA
GATGCCGACTTGGCCGCGTACGGCGTGTCTGGCGGTGACGATGCTGGCAC
GGTTGTATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12450:3196..3555-

>mRNA_H-canaliculatus_F_contig12450.2081.1 ID=mRNA_H-canaliculatus_F_contig12450.2081.1|Name=mRNA_H-canaliculatus_F_contig12450.2081.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12450:3196..3555- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTCTGCAGTTCCAAGGCGTCTTCGTGATGCGGAGACTGCACTTCGT
CGCCCAGGTGTTCAACGTCGTGTGGTGTACGCTCGTCCTGTTCTCGGTGT
TCCAGCATGAAAGCGTGGGCGGCATCGTGATCGGCATCGTCGTGTATCCG
GTCGTCCTGATCTACCTGGCGTGCATCATTCGGGTCTTGAGCGAGCTCGT
TATCTCAGTGCTGCTTGTGCCAAGTCTCCTTGCCAAGCAGGAGCCAGGGG
GAGCGGGGCGGGGAGGGCAGTCCGTGAACGGCGGAGATGCCGACTTGGCC
GCGTACGGCGTGTCTGGCGGTGACGATGCTGGCACGGTTGTATGAATGCT
TCTGCAGTTCCAAGGCGTCTTCGTGATGCGGAGACTGCACTTCGTCGCCC
AGGTGTTCAACGTCGTGTGGTGTACGCTCGTCCTGTTCTCGGTGTTCCAG
CATGAAAGCGTGGGCGGCATCGTGATCGGCATCGTCGTGTATCCGGTCGT
CCTGATCTACCTGGCGTGCATCATTCGGGTCTTGAGCGAGCTCGTTATCT
CAGTGCTGCTTGTGCCAAGTCTCCTTGCCAAGCAGGAGCCAGGGGGAGCG
GGGCGGGGAGGGCAGTCCGTGAACGGCGGAGATGCCGACTTGGCCGCGTA
CGGCGTGTCTGGCGGTGACGATGCTGGCACGGTTGTATGA
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