mRNA_H-canaliculatus_F_contig10174.201.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10174.201.1
Unique NamemRNA_H-canaliculatus_F_contig10174.201.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10174.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10174contigH-canaliculatus_F_contig10174:1082..1727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size646
Cds size537
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928646.7734501-CDS-H-canaliculatus_F_contig10174:1081..16181622928646.7734501-CDS-H-canaliculatus_F_contig10174:1081..1618Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10174 1082..1618 +
1696845511.7533205-CDS-H-canaliculatus_F_contig10174:1081..16181696845511.7533205-CDS-H-canaliculatus_F_contig10174:1081..1618Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10174 1082..1618 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928646.7863386-UTR-H-canaliculatus_F_contig10174:1618..17271622928646.7863386-UTR-H-canaliculatus_F_contig10174:1618..1727Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10174 1619..1727 +
1696845511.7672591-UTR-H-canaliculatus_F_contig10174:1618..17271696845511.7672591-UTR-H-canaliculatus_F_contig10174:1618..1727Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10174 1619..1727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10174.201.1prot_H-canaliculatus_F_contig10174.201.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10174 1082..1618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10174.201.1

>prot_H-canaliculatus_F_contig10174.201.1 ID=prot_H-canaliculatus_F_contig10174.201.1|Name=mRNA_H-canaliculatus_F_contig10174.201.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=179bp
MSLSTCSSVRTQQSRRSASHPRSTRTAASKLRASAVVAEHRGGAAFTLGF
FAGRRLSAHRPPLYVKLRGRGLSLGIFLLSRTSRGSSAAGRWAASHPSRV
VCPPLPLNYRGPTNGSGRCPRLGGLAVANGPAIHSPKRRADFHGCPSCSA
WVPPPPGTCPSTQDTTVLLLPPTSLRSL*
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mRNA from alignment at H-canaliculatus_F_contig10174:1082..1727+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10174.201.1 ID=mRNA_H-canaliculatus_F_contig10174.201.1|Name=mRNA_H-canaliculatus_F_contig10174.201.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=646bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10174:1082..1727+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCTCTCGACTTGTTCGTCCGTGCGCACGCAACAGTCTCGACGGTC
GGCGTCCCACCCCCGTTCGACTCGGACAGCGGCGTCAAAACTACGCGCGT
CGGCAGTGGTGGCGGAGCACCGCGGCGGCGCTGCCTTCACGCTTGGGTTT
TTCGCTGGCCGCCGTTTGAGTGCACACCGTCCACCGTTGTACGTTAAACT
TCGCGGCCGTGGTCTTTCCCTCGGTATTTTTTTGCTCTCGAGAACGTCAC
GGGGCAGCTCGGCGGCGGGGCGGTGGGCCGCGAGTCATCCGTCCCGCGTT
GTTTGTCCGCCGCTCCCGCTGAACTACAGAGGGCCGACGAACGGCAGCGG
CAGGTGCCCTCGCTTGGGAGGTCTCGCCGTCGCCAATGGACCGGCAATCC
ACAGCCCAAAGCGACGTGCTGACTTCCACGGCTGCCCGAGTTGTTCTGCT
TGGGTGCCTCCACCCCCCGGCACGTGTCCATCCACGCAGGACACTACCGT
ACTGCTGCTGCCCCCTACATCTCTCCGTTCCTTGTAGGTTTTGGCCGATA
AAGCAACGAGGTCGTCGTTCGCCACTCGCCGCCTTGACTGCGGGAAAACC
AACCCACGAACGGTTCTCCTTCAGCGATGCCAAGTTCCCCAACCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10174:1082..1727+

>mRNA_H-canaliculatus_F_contig10174.201.1 ID=mRNA_H-canaliculatus_F_contig10174.201.1|Name=mRNA_H-canaliculatus_F_contig10174.201.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1074bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10174:1082..1727+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCTCTCGACTTGTTCGTCCGTGCGCACGCAACAGTCTCGACGGTC
GGCGTCCCACCCCCGTTCGACTCGGACAGCGGCGTCAAAACTACGCGCGT
CGGCAGTGGTGGCGGAGCACCGCGGCGGCGCTGCCTTCACGCTTGGGTTT
TTCGCTGGCCGCCGTTTGAGTGCACACCGTCCACCGTTGTACGTTAAACT
TCGCGGCCGTGGTCTTTCCCTCGGTATTTTTTTGCTCTCGAGAACGTCAC
GGGGCAGCTCGGCGGCGGGGCGGTGGGCCGCGAGTCATCCGTCCCGCGTT
GTTTGTCCGCCGCTCCCGCTGAACTACAGAGGGCCGACGAACGGCAGCGG
CAGGTGCCCTCGCTTGGGAGGTCTCGCCGTCGCCAATGGACCGGCAATCC
ACAGCCCAAAGCGACGTGCTGACTTCCACGGCTGCCCGAGTTGTTCTGCT
TGGGTGCCTCCACCCCCCGGCACGTGTCCATCCACGCAGGACACTACCGT
ACTGCTGCTGCCCCCTACATCTCTCCGTTCCTTGTAGATGTCCCTCTCGA
CTTGTTCGTCCGTGCGCACGCAACAGTCTCGACGGTCGGCGTCCCACCCC
CGTTCGACTCGGACAGCGGCGTCAAAACTACGCGCGTCGGCAGTGGTGGC
GGAGCACCGCGGCGGCGCTGCCTTCACGCTTGGGTTTTTCGCTGGCCGCC
GTTTGAGTGCACACCGTCCACCGTTGTACGTTAAACTTCGCGGCCGTGGT
CTTTCCCTCGGTATTTTTTTGCTCTCGAGAACGTCACGGGGCAGCTCGGC
GGCGGGGCGGTGGGCCGCGAGTCATCCGTCCCGCGTTGTTTGTCCGCCGC
TCCCGCTGAACTACAGAGGGCCGACGAACGGCAGCGGCAGGTGCCCTCGC
TTGGGAGGTCTCGCCGTCGCCAATGGACCGGCAATCCACAGCCCAAAGCG
ACGTGCTGACTTCCACGGCTGCCCGAGTTGTTCTGCTTGGGTGCCTCCAC
CCCCCGGCACGTGTCCATCCACGCAGGACACTACCGTACTGCTGCTGCCC
CCTACATCTCTCCGTTCCTTGTAG
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