mRNA_H-canaliculatus_F_contig1235.2004.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1235.2004.1 vs. uniprot
Match: A0A6H5JS08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS08_9PHAE) HSP 1 Score: 508 bits (1309), Expect = 3.870e-171 Identity = 305/574 (53.14%), Postives = 364/574 (63.41%), Query Frame = 3
Query: 51 MGRNKELNKARRRTNSDRNRNGIQGNGKSREANRSATTTTAGDSTRGREEPAAARGPLKKLLLFFTAHPFLTITLAIGLPKALPCCMRWLRLRSGLMGPVMQVREEKQVLIVGSLGSGTLQMARALTALGVEVGHDTSDSSNERCRDGTASWAHGIRFLSGIPDLSRLCGAPRQQAYSSTMFQPSSECSYMFRSWDQCWADECRAVTSREYGCALRQMAKDSAAAXXXXXXXXXXGTQEGAPWPKGGVGGGERKGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGGPPKGDRGGRVEERSAEGTASVPGQWQEGERAWEEGGEEEEQECGTPFRRSLLQVRHPLRTVTLLAYRSA-RNKKGGSVRDNDCSAGRQQLTVASSLFTNKFVRTQLGRAGSRGSDAFLNFDWATVATSCVQTWAWYWVVYNRAMLSGGGLDVSYRVEDTSPQKVAALAGFSNMGVNEVLEPTEGQAASDRGALEGSSAKSIGGFEVTWEDIAAFPGGLLEEMSDLAVELGYEPAPARLLPERERVSHVGKDGADLEKG--DGETKKGWRRMFSWR 1763
MGRNKELNK R+R N +RN G NG+S +AT+ TAG S RG E+ RG +KLL F A+PF+ ITLA LP+A M+W+RLRSGLMGPV++V EEKQVLIVGSLGSGT +++ ALT LG+EVGH+TSDS NERCRDGT SWAHGIRFLSG P+LS LC APR+QA+SSTMFQPSSECSY+FRSWDQCW DECR VT REYGCALRQ A D+ A G Q A + G R+ + D +E G W +GE AW+EGGEE QECGT FRR LLQVRHPL+T+ L Y+SA +NK+G NDC AGRQ L ASSL TNKF+RTQLG AG G AF +FDWA VA SCV+TWAWYWVVYNRAML G +D YRVEDT ++AA+AGFS++ + E L+ +E + G + ++ G FEVTWE+IA+FPGGLL+E+SDLAVELGYE AP L E E+ S + DG E G DG K+GWR +F R
Sbjct: 1 MGRNKELNKLRKRNNLERN--GSSSNGRSSVI--AATSDTAGGSARGEEK----RGNFRKLLTFIAAYPFVAITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFLSGTPNLSLLCAAPRRQAFSSTMFQPSSECSYLFRSWDQCWVDECREVTKREYGCALRQRATDAEAKAEKELEARERGKQSPATLGRSSSRGKRRRKERDQW-------------------------------------------DMEAMIES----------GDWPDGESAWQEGGEEA-QECGTTFRRHLLQVRHPLQTIAWLVYKSAGKNKEGVG---NDCRAGRQHLITASSLLTNKFIRTQLG-AGGNG--AFSDFDWARVANSCVETWAWYWVVYNRAMLQG--VDKWYRVEDTPASQIAAMAGFSSVTIAESLQNSESAPDEEAGVGQVMTSNPTG-FEVTWEEIASFPGGLLQEVSDLAVELGYEAAPG-LAREAEKTSTI--DGGSGEGGVRDGGAKRGWRGLFGKR 500
BLAST of mRNA_H-canaliculatus_F_contig1235.2004.1 vs. uniprot
Match: D7G4U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U5_ECTSI) HSP 1 Score: 298 bits (763), Expect = 7.170e-92 Identity = 187/394 (47.46%), Postives = 222/394 (56.35%), Query Frame = 3
Query: 591 MFQPSSECSYMFRSWDQCWADECRAVTSREYGCALRQMAKDSAAAXXXXXXXXXXGTQEGAPWPKGGVGGGERKGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGGPPKGDRGGRVEERSAEGTASVPGQWQEGERAWEEGGEEEEQECGTPFRRSLLQVRHPLRTVTLLAYRSA-RNKKGGSVRDNDCSAGRQQLTVASSLFTNKFVRTQLGRAGSRGSDAFLNFDWATVATSCVQTWAWYWVVYNRAMLSGGGLDVSYRVEDTSPQKVAALAGFSNMGVNEVLEPTEGQAASDRGALEGSSAKSIGGFEVTWEDIAAFPGGLLEEMSDLAVELGYEPAPARLLPERERVSHVGKDGADLEKG--DGETKKGWRRMFSWR 1763
MFQPSSECSY+FR WDQCW DECR VT REYGCALRQ A+D+ A G Q + G R+ + D +E G W +GE AW+EGGEE QECGT FRR LLQVRHPL+T+ L Y+SA +NK+G DC AGRQ L ASSL TNKF+RTQLG AG G AF +FDWA VA+SCVQTWAWYWVVYNRAML G +D YRVEDT ++AA+AGFS++ + E L+ +E A D + + GFEVTW +IA+FPGGLL+E+SDLAVELGYE AP L E E+ S DG E G DG K+GWR +F R
Sbjct: 1 MFQPSSECSYLFRFWDQCWEDECREVTKREYGCALRQRARDADAKAENELEARERGKQSTGTLGRSSSRGKRRRKERDQW-------------------------------------------DMEAMIES----------GDWPDGESAWQEGGEEA-QECGTTFRRHLLQVRHPLQTIAWLVYKSAGKNKEGVGT---DCGAGRQHLITASSLLTNKFIRTQLG-AGGNG--AFSDFDWARVASSCVQTWAWYWVVYNRAMLQG--VDKWYRVEDTPASQIAAMAGFSSVTIAEALQESE-SAPDDEAGVGQVMTSNPTGFEVTWAEIASFPGGLLQEVSDLAVELGYEAAPG-LAREAEKTS--ASDGGSGEGGVRDGGAKRGWRGLFGKR 328
BLAST of mRNA_H-canaliculatus_F_contig1235.2004.1 vs. uniprot
Match: D7G4U6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U6_ECTSI) HSP 1 Score: 150 bits (379), Expect = 3.300e-39 Identity = 77/119 (64.71%), Postives = 92/119 (77.31%), Query Frame = 3
Query: 171 AGDSTRGREEPAAARGPLKKLLLFFTAHPFLTITLAIGLPKALPCCMRWLRLRSGLMGPVMQVREEKQVLIVGSLGSGTLQMARALTALGVEVGHDTSDSSNERCRDGTASWAHGIRFL 527
AG S RG E+ RG +KL F A+PF+ ITLA LP+A+ M+W+RLRSGLM PV++V E+KQVLIVGSLGSGT ++ ALT LG+EVGH+TSDS NERCRDGT SWAHGIRFL
Sbjct: 5 AGGSARGEEK----RGKFRKLFTFIAAYPFVAITLAAVLPRAVLPSMKWMRLRSGLMRPVVEVHEKKQVLIVGSLGSGTSDISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFL 119
BLAST of mRNA_H-canaliculatus_F_contig1235.2004.1 vs. uniprot
Match: A0A8J5XST6_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XST6_DIALT) HSP 1 Score: 124 bits (311), Expect = 3.190e-27 Identity = 73/174 (41.95%), Postives = 98/174 (56.32%), Query Frame = 3
Query: 192 REEPAAARGPLKKLLLFFTAHPFLTITLAIGLPKALPCCMRWLRLRSGLMGPVMQVREEKQVLIVGSLGSGTLQMARALTALGVEVGHDTSDSSNERCRDGTASWAHGIRFLSGI-PDLS--RLCGAP-RQQAYSSTMFQPSSECSYMFRSWDQCWADECRAVTSREYGCALRQ 701
R+ A L+K+ TA +TL I +P A+ W+ L SG + P + E +Q+LIVGS SGT+Q + +L LG EV H+ SD+S CRDGT SW HGIRFL GI PD S +C R + F+ S+ CSY R+WD CWA EC + E+GCA+ +
Sbjct: 26 RQAQVPAPAGLRKVARDLTA-----LTLLIAVPYAVYSAYLWVHLESGWLRPPVGHGESRQLLIVGSQSSGTVQTSASLATLGFEVAHEASDASTTFCRDGTVSWFHGIRFLPGIAPDESVELICARSLRNMGFHPAGFRRSTSCSYR-RTWDACWARECGEIIRSEWGCAITE 193
BLAST of mRNA_H-canaliculatus_F_contig1235.2004.1 vs. uniprot
Match: A0A7S1SKM8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SKM8_9CHLO) HSP 1 Score: 117 bits (292), Expect = 1.330e-24 Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 3
Query: 267 ITLAIGLPKALPCCMRWLRLRSGLMGPVMQVREEKQVLIVGSLGSGTLQMARALTALGVEVGHDTSDSSNERCRDGTASWAHGIRFLSGIPDLS----RLCGAPRQQAYSSTMFQPSSECSYMFRSWDQCWADECRAVTSREYGC 689
+T + +P+A L +G P + + EE+ +LIVG++ SGT QM L LG+E+GH+ SD+++ RDGT SW HG+RFL R+C PR + TMF+PS+ CSY F W CW EC A+ E+GC
Sbjct: 60 LTAVVLVPRACVVGYYHACLHAGWDRPAVALEEERPLLIVGTMASGTKQMVVELGRLGIEMGHENSDTTSHFARDGTVSWTHGLRFLPTAERSDDATRRMCRHPRFNCFHPTMFRPSANCSYRFTLWSDCWRRECAALWDAEFGC 204
BLAST of mRNA_H-canaliculatus_F_contig1235.2004.1 vs. uniprot
Match: A0A7S2AAK2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AAK2_TRICV) HSP 1 Score: 105 bits (261), Expect = 1.020e-20 Identity = 69/172 (40.12%), Postives = 96/172 (55.81%), Query Frame = 3
Query: 243 FTAHPFLTITLAIGLPKALPCCMRWLRLRS---------GL--MGPVMQVREEKQVLIVGSLGSGTLQMARAL-TALGVEVGHDTSDSSNERCRDGTASWAHGIRFLSGIPD--------LSRLC-GAPRQQAYSSTMFQPSS-ECSYMFRSWDQCWADECRAVTSREYGCA 692
FT+HP + + I +P AL ++RL+ GL + P + V E+QVLIV + GT+Q+A L LG+EVGH+ S+++ RDGT SW HG+RFL PD L++LC + M++PS +CS+ R WDQCW DECR V RE+GCA
Sbjct: 58 FTSHPLVNVGRFILVPYALYWGFHYVRLQRPDLASAATLGLVRLRPAVGVEGERQVLIVAPMSGGTVQVAHDLGEKLGLEVGHECSNTAWHYARDGTVSWMHGLRFLDP-PDTRDGMAKSLTKLCDNFTEAMGFHPDMYRPSQGKCSHR-RRWDQCWRDECRNVVVREWGCA 227
BLAST of mRNA_H-canaliculatus_F_contig1235.2004.1 vs. uniprot
Match: A0A7S4B6C3_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B6C3_CHRCT) HSP 1 Score: 105 bits (262), Expect = 1.160e-20 Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = 3
Query: 267 ITLAIGLPKALPCCMRWLRLRSGLMGPVMQVREEKQVLIVGSLGSGTLQMARALTALGVEVGHDTSDSSNERCRDGTASWAHGIRFLSGIP---DLSRLCGAPRQQ-AYSSTMFQPS-SECSYMFRSWDQCWADECRAVTSREYGCALR 698
IT+A+ LP L ++ L+SG + P + + + + +L+VG+ SGT + L ALG+EVGH+ SD+ RDGT SW HG+RFL G + +C R+ + MF+P CSY WD CW EC ++ + E+GCA R
Sbjct: 14 ITVAVTLPYVLWLAYLYIHLQSGWLRPPLAITDSRPLLVVGTQSSGTNSITAELKALGLEVGHEVSDTVWSFSRDGTVSWLHGLRFLPGNAPQRSIEIMCEQSRRNMGFHPAMFRPPHGGCSYR-SEWDDCWRSECASLLASEWGCAAR 161
BLAST of mRNA_H-canaliculatus_F_contig1235.2004.1 vs. uniprot
Match: A0A6T7K8R2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7K8R2_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.450e-20 Identity = 60/164 (36.59%), Postives = 92/164 (56.10%), Query Frame = 3
Query: 243 FTAHPFLTITLAIGLPKALPCCMRWLRLR-----SGLMG--PVMQVREEKQVLIVGSLGSGTLQMARALTALGVEVGHDTSDSSNERCRDGTASWAHGIRFLSGIPDLSRLCGA----PRQQAYSSTMFQP-SSECSYMFRSWDQCWADECRAVTSREYGCALR 698
F HP +T + P AL L L+ +G++ P + V++++QVL+VG++ SGT+Q+A LG+EVGH+ SD++ RDGT SW HG+RFL P + + G P + M++P ++CSY + W CW EC + S+E+GCA R
Sbjct: 44 FVNHPVTIVTALVVGPYALYLLFHLLTLQHPEWLTGIIDLRPAVSVQDQRQVLVVGTMSSGTVQVASDFKELGLEVGHENSDTAWSFVRDGTISWFHGVRFLPP-PTSNSIAGVCMAFPGNIGFHPVMYRPPQNDCSYR-QKWSNCWMRECFQIVSKEWGCAAR 205
BLAST of mRNA_H-canaliculatus_F_contig1235.2004.1 vs. uniprot
Match: A0A1Z5KA64_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KA64_FISSO) HSP 1 Score: 99.0 bits (245), Expect = 1.340e-18 Identity = 62/171 (36.26%), Postives = 89/171 (52.05%), Query Frame = 3
Query: 225 KKLLLFFTAHPFLTITLAIGLPKALPCCMRWLRLRS-------GLMGPVMQVREEKQVLIVGSLGSGTLQMARAL-TALGVEVGHDTSDSSNERCRDGTASWAHGIRFLSGIPDLSRLCGAPRQQAYSSTM-FQP----SSECSYMFRSWDQCWADECRAVTSREYGCALR 698
K L F HP + + + +P L ++ L+ + P + + E +QVLIVG++ SGT Q+A L T G+EV H+ SDS++ CRDGT SW HGIRFLS + R+ AP ++ M F P + CS +++W CW C V RE+GC R
Sbjct: 38 KTLSQIFWGHPLIVVLPYVMIPYLLYHAYHYVLLQRPELLSPFATLRPALAITEPRQVLIVGTMSSGTTQVAHELSTHFGLEVQHEVSDSTSYFCRDGTVSWFHGIRFLSPPASIERM--APLCVNFTQNMGFHPRMYAAQSCS-SWQTWSACWMKSCFEVLQREWGCTQR 205
BLAST of mRNA_H-canaliculatus_F_contig1235.2004.1 vs. uniprot
Match: A0A7S4B564_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B564_CHRCT) HSP 1 Score: 96.3 bits (238), Expect = 2.030e-17 Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = 3
Query: 363 EEKQVLIVGSLGSGTLQMARALTALGVEVGHDTSDSSNERCRDGTASWAHGIRFLSGIPDLSR-LCGAPRQQAYSSTMFQ----------PSSECSYMFRSWDQCWADECRAVTSREYGC 689
+ +Q LI+G++GSGT QMA L LG+EV H++SD+ RCRDGT SWAH +RF+ P ++ LC AP A+ M+ PS Y WD CW + CR + + E GC
Sbjct: 62 DARQFLIIGTMGSGTTQMALQLRRLGLEVAHESSDARITRCRDGTVSWAHALRFVPPHPRVANGLCAAPLDGAWGPGMYDTSGVMQCLRWPSGSGDY----WDGCWENACRKLVADELGC 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1235.2004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1235.2004.1 >prot_H-canaliculatus_F_contig1235.2004.1 ID=prot_H-canaliculatus_F_contig1235.2004.1|Name=mRNA_H-canaliculatus_F_contig1235.2004.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=577bp MGRNKELNKARRRTNSDRNRNGIQGNGKSREANRSATTTTAGDSTRGREEback to top mRNA from alignment at H-canaliculatus_F_contig1235:1721..11606+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1235.2004.1 ID=mRNA_H-canaliculatus_F_contig1235.2004.1|Name=mRNA_H-canaliculatus_F_contig1235.2004.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9886bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1235:1721..11606+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1235:1721..11606+ >mRNA_H-canaliculatus_F_contig1235.2004.1 ID=mRNA_H-canaliculatus_F_contig1235.2004.1|Name=mRNA_H-canaliculatus_F_contig1235.2004.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3462bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1235:1721..11606+ (Hapterophycus canaliculatus Oshoro5f female)back to top |