mRNA_H-canaliculatus_F_contig1234.1999.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1234.1999.1 vs. uniprot
Match: A0A6H5JIT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT4_9PHAE) HSP 1 Score: 453 bits (1165), Expect = 1.430e-137 Identity = 432/1012 (42.69%), Postives = 497/1012 (49.11%), Query Frame = 1
Query: 76 MEEAIVRLVARRALFALDWEEKQEEKRRLEEREG----------GNSGDTRKQG----GEGVEGNAGSAQ--------GGGDPLEESFGVPATLRPISWRLDFATRLAVSNANLRAVYEAQLVGLMGFVGLEEDQFLAGLSVEPGXXXXXXXXXXXXXXXXXXXFSCASTTG------------LSPSPGKATKNKRKKNACNKKERRR--LSRSSSGYC---SGADDAGFVESFSSPSPPPSSKKANRMDKRMPDMVEAAIGEAFEASLGHPVGDGGAGGPERSRSSSPQPQRFVGRHRAALVDRLLSAALNTEFLMSGLEESRVRGGSGGGSGGLDDCGEGAEGPYGFDDDFVSSSGFANSFGALDGSDTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADVRSAAEDSSSGSAAGESVAAGREGVLRLYGAVLIKLRVSVFLFCSASAA------------EAAVDRGPGGSRQGPSELTLRRQGVMSGENLEAVAMHLRSLRGDGKGGGGCGRSDGDAATWGETWARAGGL----------------RRARDWMRVEVGRAALCKGRGGGXXXXXXXXXDGVGRSADFSTRVAALLLSRSGERGGLPGVSGXXXXXXXXXXKQGAAEGARGRGRWLLG--EGPETAVETGGKAAAAAAAFAVAEEQFRRDPWPEGDLPRASEQAARMFLPR----------------------------------------RPC----------------------------GSRPPPPQYAGLLGQLPRDSRNLLSRLGHQGYVKVLEEILEGFLRDSN-AASDMAAATDASPAGRFAAVSTPVAEEV-------AASSPTSASPXXXXXXVGDNRAAGSKLKSGHPDVDKDEPSGDGGNDEEGDDQENEASPDPTDPAAGEALDASSPAFPPGDRGDDPWQALRTGAPHPSLSGLVEPTDLAKTGPTRLVLPMPNPFYRRVLHALCRVHGLRSRGGE 2676
MEEAIVRL+ARRAL ALD+E ++ ++ + G G QG G+G E N G GG + VPA+LRP+SWRLDFATRLAVSNANLR VYEAQLVGLM +GL+EDQ L GLS G S ST G LS + A+ KK N+ +R +R S Y GADD S SSP ++K NR DKRMPDMVEAAIGEAFEASLG G GGAGG S S P P+RF G HRA LVD LL +AL+T+ +SGL+ SRV + GE EGPY DD FVSSSGF NSFGALD S + XXXXXXXXXXX + S + G++ E AAGR+GVLRLYG+ LIKLRVSVFLFCSA E ++D G +QGPSELTLRRQGVMS ENL+AVA HL SLR + GG + RRARDWM++EVGRAALC G G GR+ FSTRVAALLLSRSGERG XXXXXXXXXX EGP T +VAE +F RDPWPE DLPRASEQ AR+FL + RP G PPP+YA LLGQLPRDSR+LL+RLGH GYVKVLE IL+GFLR SN +AS A A A S+ + ++ A S T+A P DN AA + S PD D + G+ GDD + +SP P L P PG DPW+AL+ GAPHP LSGLVEP +LA TRLVLPMPNPFYRRVLHALCRVHGLRSRGGE
Sbjct: 1 MEEAIVRLIARRALSALDYEGERWRQQLKQXXXXXXXXXXXXXXGQDGRGETQGTHWAGKGAEANLGGEADSVLSWGVGGKGAADGGSAVPASLRPLSWRLDFATRLAVSNANLRVVYEAQLVGLMRSIGLQEDQHLVGLSGAAGGGGCASGVGEGKMRKRLCLSSPYSTRGSXXXXXXXXXKSLSRADVVASAQSPKKKKANEPPGKRDGHARCHSSYLFFRPGADDPALAASCSSPLSG-AAKNVNRRDKRMPDMVEAAIGEAFEASLGRTFG-GGAGGAGSSSSHPPGPRRFAGAHRARLVDGLLCSALSTDLFLSGLDGSRV-------GAVRERFGEEVEGPYARDDGFVSSSGFVNSFGALDSSSGSSSEDEEETGGMDEGREDLGGRLGEEGSSLSEDLAAXXXXXXXXXXXXSIADSTVPE---GTSTEELTAAGRQGVLRLYGSALIKLRVSVFLFCSAXXXXXXXXXXXXXXXEKSID---GNDKQGPSELTLRRQGVMSRENLDAVAAHLLSLRTETGGGXXXXXXXXXSPVXXXXXXXXXXXXXXXXXXXXXEAVDSGRRARDWMKIEVGRAALCAG-----GSNAAATATGAGRNVPFSTRVAALLLSRSGERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEGPRVIRTTP----------SVAEIEFGRDPWPEEDLPRASEQVARIFLGQGAGDRAGAASSNRGGXXXXXXXXXXXXXXGIVASGDGGTNRPXXXXXXXXXXXXXXXXXXGXXXXXXGGSGGDGQPPPRYARLLGQLPRDSRHLLARLGHHGYVKVLEHILQGFLRSSNGSASAEAPAXXXXXXXGDPASSSALETKIGTTDTAGAGGSETAARPAP------DNAAAADE--SAPPDADS-ILTEIAGSSAPGDDLHDSSSPPPP------QLPDLDPDHDPGR--SDPWRALQAGAPHPCLSGLVEPPELATAVGTRLVLPMPNPFYRRVLHALCRVHGLRSRGGE 965
BLAST of mRNA_H-canaliculatus_F_contig1234.1999.1 vs. uniprot
Match: D8LKV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKV8_ECTSI) HSP 1 Score: 355 bits (910), Expect = 1.780e-103 Identity = 388/1033 (37.56%), Postives = 441/1033 (42.69%), Query Frame = 1
Query: 76 MEEAIVRLVARRALFALDWEEK----------QEEKRRLEEREGGNSGDTRKQGGEGVEGNAG--------SAQGGGDPLEESFGVPATLRPISWRLDFATRLAVSNANLRAVYEAQLVGLMGFVGLEEDQFLAGLSVEPGXXXXXXXXXXXXXXXXXXX--------------------FSCASTTGLSPSPGKATKNKRKKNACNKKERRRLSRSSSG--YCSGADDAGFVESFSSPSPPPSSKKANRMDKRMPDMVEAAIGEAFEASLGHPVGDGGAGGPERSRSSSPQPQRFVGRHRAALVDRLLSAALNTEFLMSGLEESRVRGGSGGGSGGLDDCGEGAEGPYGFDDDFVSSSGFANSFGALD---GSDTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADVRSAAEDSSSGSAAGESVAAGREGVLRLYGAVLIKLRVSVFLFCSASAAEAAVDRGP-----------GGSRQGPSELTLRRQGVMSGENLEAVAMHLRSLRGDGKGGGGCGRSDGDAATWGETWARAGGLRRARDWMRVEVGRAALCKGRGGGXXXXXXXXXDGVGRSADFSTRVAALLLSRSGERGGLPGVSGXXXXXXXXXXKQGAAEGARGRGRWLLGEGPETAVETGGKAAAAAAAFAVAEEQFRRDPWPEGDLPRASEQAARMFLPRRPCGSRPPPPQYAGLLGQLPRDSRNLLSRLGHQGYVKVLEEILEGFLRDSNAASDMAAATDASPAGRFAAVSTPVAEEVAASSPTSASPXXXXXXVGDNRAAGSKLKSGHPDVDKDEPSGDGGNDEEGDDQENEASPDPTDPAAGEALDASSPAFPP---------GDRGDDPWQALRTGAPHPSLSGLVEPTDLAKTGPTRLVLPMPNPFYRRVLHALCRVHGLRSRGGEATRRREAAGPRHVAV----------------AGAFARGGSEXXXXXXXXXXXXXXXXXXXVEITRXXXXXXXXWRGKRPGGRVGGGAGGMLALVPVEILLGER 2937
MEEAIVRLVARRAL ALD EE Q +++ +E G N G R G G E N G S GG +E F VPA+LRP+SWRLDFATRLAVSNANLR VYEAQLVGLMG +GL+EDQ L GLS G XXXXXXX FS A SP K K+K N K SS + GADD S SSP ++K NR DKRMPDMVEAAIGEAFEASLG G GG E S P PQRF G HRA LVD LL +AL+T+ +SGL+ SRV L+ GE EGPY DDDFVSSSGF NSFGALD GS + XXXXXXXXXXXXXXX A G++ E AAGR+GVLRLYGA LIKLRVSVF G ++GPSELTLRRQGVMS ENL+AVA R PG SG PPP+YA LLGQLPRDSR+LL+RLGH GYVKVLE IL+GFLR SN ++ + A A+PA AA P S+S D A + P D ++ D ++ + +P A G+ L SS PP G DPW+AL+ GAPHP LSGLV+P LA G TRLVLPMPNPFYRRVLHALCRVHGLRSRGGE + P A A +E VE+TR XXXXX + KRPGG G G G +L +PVE+LLGE
Sbjct: 1 MEEAIVRLVARRALSALDCEEXXXXXXXXXXXQGREQKGQEGRGENQGTQRA--GRGAEANRGGEADSVLSSEPGGKGAADEGFAVPASLRPLSWRLDFATRLAVSNANLRVVYEAQLVGLMGSIGLQEDQHLVGLSRAAGGGGCASGVGEGKXXXXXXXXXXXXXXXXXXXXXXXXTNSFSRADVVASVQSP----KKKKKANEPPGKRDGHAGCHSSDPLFRPGADDPALAASCSSPLSG-GARKVNRRDKRMPDMVEAAIGEAFEASLGRTFGGGGG---ESWSSPPPGPQRFAGAHRARLVDGLLCSALSTDLFLSGLDGSRV-------GADLERFGEEVEGPYAHDDDFVSSSGFVNSFGALDSSSGSSSEDEERARGMDEGRGDVGGRLGEQGSSLSEDLAXXXXXXXXXXXXXXXXXXXPIADSTVPEGTSTDERTAAGRQGVLRLYGAALIKLRVSVFXXXXXXXXXXXXXXXXXXXXXXXKGKDGNDKEGPSELTLRRQGVMSRENLDAVAKLKR-------------------------------------------------------------------------------------------PGGSGSDGH---------------------------------------------------------------------------------PPPRYARLLGQLPRDSRHLLARLGHHGYVKVLEHILQGFLRSSNGSASLEAPAAAAPA--------------AAGDPASSSALETNIGTTDTAGADGCETAARPAPDN----ATAADESAPPDADSILTENPGSSARGDDLHESSWPPPPQLPDLVPDHGPGRSDPWRALQAGAPHPCLSGLVDPPGLATAGGTRLVLPMPNPFYRRVLHALCRVHGLRSRGGETLAAKRILPPXXXXXXXXXXXXXXXXXXXXXAAGRALATTEGEAGEGVGSLGGIAVRHRTVEVTRGDGXXXXXXK-KRPGG--GRGLGDVL--IPVEVLLGEE 821 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1234.1999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1234.1999.1 >prot_H-canaliculatus_F_contig1234.1999.1 ID=prot_H-canaliculatus_F_contig1234.1999.1|Name=mRNA_H-canaliculatus_F_contig1234.1999.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=980bp MSTFHLYSLRNEERRERLEWLGDIVMEEAIVRLVARRALFALDWEEKQEEback to top mRNA from alignment at H-canaliculatus_F_contig1234:19950..26650+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1234.1999.1 ID=mRNA_H-canaliculatus_F_contig1234.1999.1|Name=mRNA_H-canaliculatus_F_contig1234.1999.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6701bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1234:19950..26650+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1234:19950..26650+ >mRNA_H-canaliculatus_F_contig1234.1999.1 ID=mRNA_H-canaliculatus_F_contig1234.1999.1|Name=mRNA_H-canaliculatus_F_contig1234.1999.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5880bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1234:19950..26650+ (Hapterophycus canaliculatus Oshoro5f female)back to top |