mRNA_H-canaliculatus_F_contig12323.1986.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12323.1986.1
Unique NamemRNA_H-canaliculatus_F_contig12323.1986.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12323.1986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12323contigH-canaliculatus_F_contig12323:1544..1983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size440
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12323.1986.1prot_H-canaliculatus_F_contig12323.1986.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12323 1583..1903 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.0482628-UTR-H-canaliculatus_F_contig12323:1543..15821622928949.0482628-UTR-H-canaliculatus_F_contig12323:1543..1582Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12323 1544..1582 +
1696845625.5787563-UTR-H-canaliculatus_F_contig12323:1543..15821696845625.5787563-UTR-H-canaliculatus_F_contig12323:1543..1582Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12323 1544..1582 +
1622928949.0847073-UTR-H-canaliculatus_F_contig12323:1903..19831622928949.0847073-UTR-H-canaliculatus_F_contig12323:1903..1983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12323 1904..1983 +
1696845625.5990815-UTR-H-canaliculatus_F_contig12323:1903..19831696845625.5990815-UTR-H-canaliculatus_F_contig12323:1903..1983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12323 1904..1983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.0670104-CDS-H-canaliculatus_F_contig12323:1582..19031622928949.0670104-CDS-H-canaliculatus_F_contig12323:1582..1903Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12323 1583..1903 +
1696845625.5877059-CDS-H-canaliculatus_F_contig12323:1582..19031696845625.5877059-CDS-H-canaliculatus_F_contig12323:1582..1903Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12323 1583..1903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12323.1986.1

>prot_H-canaliculatus_F_contig12323.1986.1 ID=prot_H-canaliculatus_F_contig12323.1986.1|Name=mRNA_H-canaliculatus_F_contig12323.1986.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MCTRPDFRQSPRDDVRVIRRKDTQHACREIFRDTSLPRSCLGAIIARARH
TRHHHRRRTRQTGVSKLYPAEPAFPVKTITTERLAIDDYYELQINHTPSK
CSPFVP*
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mRNA from alignment at H-canaliculatus_F_contig12323:1544..1983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12323.1986.1 ID=mRNA_H-canaliculatus_F_contig12323.1986.1|Name=mRNA_H-canaliculatus_F_contig12323.1986.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=440bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12323:1544..1983+ (Hapterophycus canaliculatus Oshoro5f female)
GCCACAAGTTCAATACGCCTGTGCCGTCTACAGAGCCACATGTGCACCAG
ACCAGACTTCCGCCAGTCCCCGCGAGACGACGTGCGTGTGATCAGACGAA
AAGACACACAACATGCTTGTAGAGAGATCTTCCGAGACACCTCTCTCCCT
CGATCATGTCTCGGGGCAATCATTGCACGGGCACGCCACACGAGGCATCA
TCACAGAAGGCGCACCCGACAAACTGGTGTTTCCAAATTGTACCCAGCAG
AGCCCGCGTTCCCAGTGAAGACCATCACGACCGAGCGCCTCGCTATCGAC
GACTACTACGAACTACAAATCAATCACACACCGAGCAAGTGCTCGCCCTT
CGTACCTTGACCCGGCCATTCTCGACCGGCTCTACTCTGGCGAGCAAGAG
CCAGGATCCTGTATCGCCCTGGCCACCCTCTGCTGCTGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12323:1544..1983+

>mRNA_H-canaliculatus_F_contig12323.1986.1 ID=mRNA_H-canaliculatus_F_contig12323.1986.1|Name=mRNA_H-canaliculatus_F_contig12323.1986.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12323:1544..1983+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCACCAGACCAGACTTCCGCCAGTCCCCGCGAGACGACGTGCGTGT
GATCAGACGAAAAGACACACAACATGCTTGTAGAGAGATCTTCCGAGACA
CCTCTCTCCCTCGATCATGTCTCGGGGCAATCATTGCACGGGCACGCCAC
ACGAGGCATCATCACAGAAGGCGCACCCGACAAACTGGTGTTTCCAAATT
GTACCCAGCAGAGCCCGCGTTCCCAGTGAAGACCATCACGACCGAGCGCC
TCGCTATCGACGACTACTACGAACTACAAATCAATCACACACCGAGCAAG
TGCTCGCCCTTCGTACCTTGAATGTGCACCAGACCAGACTTCCGCCAGTC
CCCGCGAGACGACGTGCGTGTGATCAGACGAAAAGACACACAACATGCTT
GTAGAGAGATCTTCCGAGACACCTCTCTCCCTCGATCATGTCTCGGGGCA
ATCATTGCACGGGCACGCCACACGAGGCATCATCACAGAAGGCGCACCCG
ACAAACTGGTGTTTCCAAATTGTACCCAGCAGAGCCCGCGTTCCCAGTGA
AGACCATCACGACCGAGCGCCTCGCTATCGACGACTACTACGAACTACAA
ATCAATCACACACCGAGCAAGTGCTCGCCCTTCGTACCTTGA
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