mRNA_H-canaliculatus_F_contig1226.1937.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1226.1937.1
Unique NamemRNA_H-canaliculatus_F_contig1226.1937.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1226.1937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1226contigH-canaliculatus_F_contig1226:1055..1432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1226.1937.1prot_H-canaliculatus_F_contig1226.1937.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1226 1073..1420 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.4832833-UTR-H-canaliculatus_F_contig1226:1054..10721622928941.4832833-UTR-H-canaliculatus_F_contig1226:1054..1072Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1226 1055..1072 +
1696845621.258437-UTR-H-canaliculatus_F_contig1226:1054..10721696845621.258437-UTR-H-canaliculatus_F_contig1226:1054..1072Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1226 1055..1072 +
1622928941.5235136-UTR-H-canaliculatus_F_contig1226:1420..14321622928941.5235136-UTR-H-canaliculatus_F_contig1226:1420..1432Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1226 1421..1432 +
1696845621.2760627-UTR-H-canaliculatus_F_contig1226:1420..14321696845621.2760627-UTR-H-canaliculatus_F_contig1226:1420..1432Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1226 1421..1432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.5019224-CDS-H-canaliculatus_F_contig1226:1072..14201622928941.5019224-CDS-H-canaliculatus_F_contig1226:1072..1420Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1226 1073..1420 +
1696845621.267412-CDS-H-canaliculatus_F_contig1226:1072..14201696845621.267412-CDS-H-canaliculatus_F_contig1226:1072..1420Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1226 1073..1420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1226.1937.1

>prot_H-canaliculatus_F_contig1226.1937.1 ID=prot_H-canaliculatus_F_contig1226.1937.1|Name=mRNA_H-canaliculatus_F_contig1226.1937.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
MDFTPLMHGNLNNANAPRTNCSSLVHARGCGGLWGAGCAIVRGLTEEMCN
TCHEFPWNIPLAAIRGGPQATFLVLDMLTALPDYCRQRFHRTNVAGNSGG
SHVMWTGSGQWNMTI*
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mRNA from alignment at H-canaliculatus_F_contig1226:1055..1432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1226.1937.1 ID=mRNA_H-canaliculatus_F_contig1226.1937.1|Name=mRNA_H-canaliculatus_F_contig1226.1937.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=378bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1226:1055..1432+ (Hapterophycus canaliculatus Oshoro5f female)
CGCAGGTAGTAGCAGGAAATGGATTTTACCCCCTTGATGCACGGCAACCT
AAATAACGCGAACGCGCCCCGAACGAATTGCAGCAGTCTTGTACACGCGC
GAGGATGTGGAGGCTTGTGGGGCGCAGGTTGCGCGATTGTCAGAGGACTG
ACAGAAGAGATGTGCAACACATGCCATGAGTTTCCCTGGAACATTCCACT
CGCTGCAATCCGTGGCGGACCTCAGGCGACATTCCTCGTGTTGGATATGC
TCACAGCATTGCCAGATTATTGCAGGCAGAGATTTCACCGAACAAATGTA
GCGGGGAATTCGGGGGGTTCGCATGTGATGTGGACAGGATCTGGGCAATG
GAATATGACTATATAGCGGAGCTTGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1226:1055..1432+

>mRNA_H-canaliculatus_F_contig1226.1937.1 ID=mRNA_H-canaliculatus_F_contig1226.1937.1|Name=mRNA_H-canaliculatus_F_contig1226.1937.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1226:1055..1432+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATTTTACCCCCTTGATGCACGGCAACCTAAATAACGCGAACGCGCC
CCGAACGAATTGCAGCAGTCTTGTACACGCGCGAGGATGTGGAGGCTTGT
GGGGCGCAGGTTGCGCGATTGTCAGAGGACTGACAGAAGAGATGTGCAAC
ACATGCCATGAGTTTCCCTGGAACATTCCACTCGCTGCAATCCGTGGCGG
ACCTCAGGCGACATTCCTCGTGTTGGATATGCTCACAGCATTGCCAGATT
ATTGCAGGCAGAGATTTCACCGAACAAATGTAGCGGGGAATTCGGGGGGT
TCGCATGTGATGTGGACAGGATCTGGGCAATGGAATATGACTATATAGAT
GGATTTTACCCCCTTGATGCACGGCAACCTAAATAACGCGAACGCGCCCC
GAACGAATTGCAGCAGTCTTGTACACGCGCGAGGATGTGGAGGCTTGTGG
GGCGCAGGTTGCGCGATTGTCAGAGGACTGACAGAAGAGATGTGCAACAC
ATGCCATGAGTTTCCCTGGAACATTCCACTCGCTGCAATCCGTGGCGGAC
CTCAGGCGACATTCCTCGTGTTGGATATGCTCACAGCATTGCCAGATTAT
TGCAGGCAGAGATTTCACCGAACAAATGTAGCGGGGAATTCGGGGGGTTC
GCATGTGATGTGGACAGGATCTGGGCAATGGAATATGACTATATAG
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