mRNA_H-canaliculatus_F_contig12248.1930.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12248.1930.1
Unique NamemRNA_H-canaliculatus_F_contig12248.1930.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12248.1930.1 vs. uniprot
Match: D7FZT6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZT6_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 9.330e-75
Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = 1 
Query:  157 YAPTPPGMPAQVGYQYTPSGQAYGSIYYGQQGPVQSNPYQYGYPPHQYPPSASQYQQGGGGQRFPNMPRGYPATEYGSQG-MGMGYGQMDYAAGSQYGVPPNGNAYMGDVSKEQYGDFGQDQFGMPQQMPGQG 552
            YAPTPPGMPAQVGYQYTPSGQAYGSIYYGQQGPVQSNPYQYGYPPHQYPPSASQYQQGGGGQRFPNMPRGYPATEYGSQG MGMGYGQMDY+A SQYGVPPNGN YM DV KEQYGDFGQDQFGMPQQM GQG
Sbjct:  771 YAPTPPGMPAQVGYQYTPSGQAYGSIYYGQQGPVQSNPYQYGYPPHQYPPSASQYQQGGGGQRFPNMPRGYPATEYGSQGGMGMGYGQMDYSASSQYGVPPNGNGYMSDVGKEQYGDFGQDQFGMPQQMSGQG 903
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12248.1930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZT6_ECTSI9.330e-7594.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12248contigH-canaliculatus_F_contig12248:825..3761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.8
Seed ortholog evalue8e-67
Seed eggNOG ortholog2880.D7FZT6
EggNOG OGs28M4J@1,2QTMG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size914
Cds size903
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12248.1930.1prot_H-canaliculatus_F_contig12248.1930.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12248 825..3752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928940.8030498-CDS-H-canaliculatus_F_contig12248:824..12831622928940.8030498-CDS-H-canaliculatus_F_contig12248:824..1283Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 825..1283 -
1696845620.8717177-CDS-H-canaliculatus_F_contig12248:824..12831696845620.8717177-CDS-H-canaliculatus_F_contig12248:824..1283Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 825..1283 -
1622928940.8127651-CDS-H-canaliculatus_F_contig12248:1806..18941622928940.8127651-CDS-H-canaliculatus_F_contig12248:1806..1894Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 1807..1894 -
1696845620.8873386-CDS-H-canaliculatus_F_contig12248:1806..18941696845620.8873386-CDS-H-canaliculatus_F_contig12248:1806..1894Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 1807..1894 -
1622928940.8227692-CDS-H-canaliculatus_F_contig12248:2345..24771622928940.8227692-CDS-H-canaliculatus_F_contig12248:2345..2477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 2346..2477 -
1696845620.8980513-CDS-H-canaliculatus_F_contig12248:2345..24771696845620.8980513-CDS-H-canaliculatus_F_contig12248:2345..2477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 2346..2477 -
1622928940.8337417-CDS-H-canaliculatus_F_contig12248:3209..33131622928940.8337417-CDS-H-canaliculatus_F_contig12248:3209..3313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 3210..3313 -
1696845620.9065077-CDS-H-canaliculatus_F_contig12248:3209..33131696845620.9065077-CDS-H-canaliculatus_F_contig12248:3209..3313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 3210..3313 -
1622928940.8430576-CDS-H-canaliculatus_F_contig12248:3632..37521622928940.8430576-CDS-H-canaliculatus_F_contig12248:3632..3752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 3633..3752 -
1696845620.914863-CDS-H-canaliculatus_F_contig12248:3632..37521696845620.914863-CDS-H-canaliculatus_F_contig12248:3632..3752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 3633..3752 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928940.8558269-UTR-H-canaliculatus_F_contig12248:3752..37611622928940.8558269-UTR-H-canaliculatus_F_contig12248:3752..3761Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12248 3753..3761 -
1696845620.9249818-UTR-H-canaliculatus_F_contig12248:3752..37611696845620.9249818-UTR-H-canaliculatus_F_contig12248:3752..3761Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12248 3753..3761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12248.1930.1

>prot_H-canaliculatus_F_contig12248.1930.1 ID=prot_H-canaliculatus_F_contig12248.1930.1|Name=mRNA_H-canaliculatus_F_contig12248.1930.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=301bp
MRCGGGGGGGGGGGGGGGGGGGGGGGGARGGWKSESCAACAPPPQQQQAY
APTPPGMPAQVGYQYTPSGQAYGSIYYGQQGPVQSNPYQYGYPPHQYPPS
ASQYQQGGGGQRFPNMPRGYPATEYGSQGMGMGYGQMDYAAGSQYGVPPN
GNAYMGDVSKEQYGDFGQDQFGMPQQMPGQGGGAGAGAGAGGSSGTSGGA
GAGAGSSGSSGLGGPSLSAASTAAVSGGSSGGVGIGASVSDKLSSGAQLS
STGGVSGGGGVNSHYGGGGGGGGAAGGGGGGGGGHNSQGGRQAQGMYGGG
G
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mRNA from alignment at H-canaliculatus_F_contig12248:825..3761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12248.1930.1 ID=mRNA_H-canaliculatus_F_contig12248.1930.1|Name=mRNA_H-canaliculatus_F_contig12248.1930.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2937bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12248:825..3761- (Hapterophycus canaliculatus Oshoro5f female)
AGTAAGCAGATGCGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCACGGGGAG
GTTGGAAGAGCGAGTCGTGCGCTGCGTGTGTGTTGCTGTTGGTCAGTCCT
GCGAGGAGGCATGTTTCGTGGGCGTCGTGTTCGATACAGGCACTGCAGAC
GGGGCCACCCAGGTGTGTAGGTGCGTATCAAGCAAACACCAAACAGAAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGTGCCTTGCCCCT
CCTCGTGCGATTCGTTCCGCCCGCCGTAGCCCCACCCAACCCTCCTTTGC
GCGGTCCTGCATCCGCCGCCTCTGGCCGTCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCGCCGCCCCCCCCCCCCCCCCCCCTCCCCACCGCTAAGGC
GCCGCCCCCGCAGCAGCAGCAGGCGTACGCGCCCACGCCACCCGGGATGC
CGGCCCAGGTCGGGTACCAGTACACTCCGTCCGGCCAGGCGTATGGCAGC
ATGTGAGTCTCTCTCGCCGCCGTGTTGTGTGAGCCGTGAGTCCGGTGGTG
AGGTCTGGAAGACGCTGCCACCTGCGGAAGGCGCCCGTCCCGGAAGATAT
CTCGTCCCACCCGTGCCCCCGTCCGGCTCCTGCGGTGTTTGTGTGTTTTA
GCATTTTTACTGCCGCCGCCGCTTCTCGCCACGTGCGTACGGAACTCGCG
CAAGCTCCGCCGCGTGGGCCGGAGAGGGTAAGAAAATATGGTTCGGGTTC
TGGGGTGGAACGGCGGGGTATCGAAAGTACGAGAAAGAGCGGGGGGATTG
AAACCACAAAAAAGTACAAGAATGGGGAGGGGGGGGGGCGTTGACGCCGA
GTACCGGTGGAGATGAGGGTGATGGTGCGACTCTGTGGATTGCCCGGTGC
ACCAGTCGTCGTCTCACGTCACTGCGGCGTGCGCGACTGAAAGCCCCAGT
GTCGGGGCTCCGTGGAACGTTCCTCTCGGTCGAGTGGCCGTTCGCCCGCC
GGTCCCCTCGTGATGTCACGACACGCAGACGGCGAGGTGCGCGAACGGAA
TCGGCTTGCTTGCCGGCGCCGTTCAGGTCGGACCGGACCTCGCTCTCACT
CTCCCTCTCCCGCTGATGTACCGGGCGGTGCATTCCCCGTACCTTCCACC
TTCCCCGCTCACGCTCCACCCCCCGCGGAACTGCTCGTCTCCTCTCCCTT
TCGAAAAACGCGCGATGTGCGTGCGTGCGCGCAGCTACTACGGCCAGCAG
GGGCCGGTGCAGTCGAACCCGTACCAGTACGGGTACCCCCCTCACCAGTA
CCCGCCCAGCGCGAGCCAGTACCAGCAGGGCGGCGGGGGACAGCGCTTCC
CGAACATGCCTCGCGGGTAGGTGGAAACGCAGGCGTTGTGTTCTCTCTTG
TCGTGGTGGCTTTAATGAAACAAGTCAACAACACCGAAGGAGTACCCACG
TGAGACACTGTCCATCTTAAGGGGATTTTTCGTGGATTTTGTTGATTCCA
TTCGGTGAGGGTTCCACTCGCACGTCCGAAGCTTTTGTTCAGGGCGGTTC
CGAAAGCGAAAGTTCTGTACGGAGGGTTGGTTGCCGCTATTGCCACCGCC
GCGACCGCCGCGGTTGCGAACGTCGTCTTCCCTCGGGAAAAAAAAACACG
ACCGATTTTTCCCCCCCGAGCCCTCTCCGGTAGCACGCCGAAGATCATCC
ACTAGCTTCCGTCCCTGGACATGTTTGCATCACGCACGGACATCTTTGGA
CTCTTATCTATGGGTTTCGACCTTCATGCCTGTGATCCCGCAACGCCCTG
TTCGCCATCGGGAACAGGTACCCGGCTACGGAGTACGGTAGCCAGGGGAT
GGGAATGGGCTACGGGCAGATGGACTACGCGGCGGGCAGCCAGTACGGAG
TTCCGGTAAGGAGGGGGGCTGAAGGCGGGCCGTGGTTTTGTTAGTCACTC
GGGGGCTCGCGTGGCGGTCCGGCTGCGTTGCGGGGCGGGGAGGCAGCGCG
CGGCATAACAGAGGGTACGAGTATACGGCACGAAGTTTCGGCCGCGTGAG
CGCAGGATATCTGTAGCCTCCTCAGCGCCGTTCGCGTGCGGGGCACGTCC
AGGCTCATGCCGTGGTCCTCCACAGGACGCGGTGTGGATTGATGTTGCCT
GGCGAGGCACTTTGTACTCTTGCTCTTCCTGCCGGCGTGTGCTGCGTGTT
CCGGGGTTTCCAGTTTTTTTACAAAGTTGTGCGGGGTGGGATCGGCTAGC
GTCACCCCCCCCACGCCTCCCTGTCTCTCTCTGTCTCTCCCTCTCTCTCT
CTCTCTATCTCTCTTATCTCTCTCATTTCACTTATTCGGTTTTGTTGGCG
AATGATGGAGGTAAGACACACACACACACACACACACACACACAACCATC
CCCGCCACCCCCCCCGCCACGCACGCAGCCGAACGGAAATGCCTACATGG
GCGACGTGTCCAAGGAGCAGTACGGCGACTTCGGCCAGGACCAGTTCGGC
ATGCCGCAGCAGATGCCCGGCCAAGGAGGCGGGGCCGGCGCAGGAGCGGG
CGCCGGCGGTAGCAGCGGTACCTCCGGCGGGGCCGGCGCCGGAGCCGGCT
CCTCGGGGTCGAGCGGCCTCGGCGGTCCCAGCCTTTCCGCCGCCTCGACC
GCGGCCGTCTCCGGCGGCAGCAGCGGAGGCGTCGGCATCGGCGCGAGCGT
GTCGGACAAGCTTTCCTCGGGCGCGCAGCTCTCGAGCACCGGCGGCGTCA
GCGGCGGTGGTGGCGTGAACAGCCACTACGGCGGCGGCGGCGGCGGCGGC
GGCGCGGCGGGCGGCGGCGGGGGCGGTGGCGGTGGCCACAACAGCCAGGG
CGGCCGCCAGGCGCAGGGCATGTACGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12248:825..3761-

>mRNA_H-canaliculatus_F_contig12248.1930.1 ID=mRNA_H-canaliculatus_F_contig12248.1930.1|Name=mRNA_H-canaliculatus_F_contig12248.1930.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1806bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12248:825..3761- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCACGGGGAGGTTGGAAGA
GCGAGTCGTGCGCTGCGTGTATGCGGTGTGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGCACGGGGAGGTTGGAAGAGCGAGTCGTGCGCTGCGTGTGCGCCGCCCC
CGCAGCAGCAGCAGGCGTACGCGCCCACGCCACCCGGGATGCCGGCCCAG
GTCGGGTACCAGTACACTCCGTCCGGCCAGGCGTATGGCAGCATGCGCCG
CCCCCGCAGCAGCAGCAGGCGTACGCGCCCACGCCACCCGGGATGCCGGC
CCAGGTCGGGTACCAGTACACTCCGTCCGGCCAGGCGTATGGCAGCATCT
ACTACGGCCAGCAGGGGCCGGTGCAGTCGAACCCGTACCAGTACGGGTAC
CCCCCTCACCAGTACCCGCCCAGCGCGAGCCAGTACCAGCAGGGCGGCGG
GGGACAGCGCTTCCCGAACATGCCTCGCGGCTACTACGGCCAGCAGGGGC
CGGTGCAGTCGAACCCGTACCAGTACGGGTACCCCCCTCACCAGTACCCG
CCCAGCGCGAGCCAGTACCAGCAGGGCGGCGGGGGACAGCGCTTCCCGAA
CATGCCTCGCGGGTACCCGGCTACGGAGTACGGTAGCCAGGGGATGGGAA
TGGGCTACGGGCAGATGGACTACGCGGCGGGCAGCCAGTACGGAGTTCCG
GTACCCGGCTACGGAGTACGGTAGCCAGGGGATGGGAATGGGCTACGGGC
AGATGGACTACGCGGCGGGCAGCCAGTACGGAGTTCCGCCGAACGGAAAT
GCCTACATGGGCGACGTGTCCAAGGAGCAGTACGGCGACTTCGGCCAGGA
CCAGTTCGGCATGCCGCAGCAGATGCCCGGCCAAGGAGGCGGGGCCGGCG
CAGGAGCGGGCGCCGGCGGTAGCAGCGGTACCTCCGGCGGGGCCGGCGCC
GGAGCCGGCTCCTCGGGGTCGAGCGGCCTCGGCGGTCCCAGCCTTTCCGC
CGCCTCGACCGCGGCCGTCTCCGGCGGCAGCAGCGGAGGCGTCGGCATCG
GCGCGAGCGTGTCGGACAAGCTTTCCTCGGGCGCGCAGCTCTCGAGCACC
GGCGGCGTCAGCGGCGGTGGTGGCGTGAACAGCCACTACGGCGGCGGCGG
CGGCGGCGGCGGCGCGGCGGGCGGCGGCGGGGGCGGTGGCGGTGGCCACA
ACAGCCAGGGCGGCCGCCAGGCGCAGGGCATGTACGGCGGCGGCGGCCCG
AACGGAAATGCCTACATGGGCGACGTGTCCAAGGAGCAGTACGGCGACTT
CGGCCAGGACCAGTTCGGCATGCCGCAGCAGATGCCCGGCCAAGGAGGCG
GGGCCGGCGCAGGAGCGGGCGCCGGCGGTAGCAGCGGTACCTCCGGCGGG
GCCGGCGCCGGAGCCGGCTCCTCGGGGTCGAGCGGCCTCGGCGGTCCCAG
CCTTTCCGCCGCCTCGACCGCGGCCGTCTCCGGCGGCAGCAGCGGAGGCG
TCGGCATCGGCGCGAGCGTGTCGGACAAGCTTTCCTCGGGCGCGCAGCTC
TCGAGCACCGGCGGCGTCAGCGGCGGTGGTGGCGTGAACAGCCACTACGG
CGGCGGCGGCGGCGGCGGCGGCGCGGCGGGCGGCGGCGGGGGCGGTGGCG
GTGGCCACAACAGCCAGGGCGGCCGCCAGGCGCAGGGCATGTACGGCGGC
GGCGGC
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