mRNA_H-canaliculatus_F_contig10163.190.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10163.190.1
Unique NamemRNA_H-canaliculatus_F_contig10163.190.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10163.190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10163contigH-canaliculatus_F_contig10163:4087..4454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928645.8314078-CDS-H-canaliculatus_F_contig10163:4086..44521622928645.8314078-CDS-H-canaliculatus_F_contig10163:4086..4452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10163 4087..4452 +
1696845511.2365205-CDS-H-canaliculatus_F_contig10163:4086..44521696845511.2365205-CDS-H-canaliculatus_F_contig10163:4086..4452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10163 4087..4452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10163.190.1prot_H-canaliculatus_F_contig10163.190.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10163 4087..4452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10163.190.1

>prot_H-canaliculatus_F_contig10163.190.1 ID=prot_H-canaliculatus_F_contig10163.190.1|Name=mRNA_H-canaliculatus_F_contig10163.190.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp
GVFLLRAFSAPRMTVVRSVLSCGNPKKNSYVGMWKQESFVATDELCGYSA
GLFVLFEGASSFVFSSGGRGLPTVTKCSGDIPLKTAPCVDARTAAISGSR
WPRNLPGSESSLTPVLGYCQRA
back to top

mRNA from alignment at H-canaliculatus_F_contig10163:4087..4454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10163.190.1 ID=mRNA_H-canaliculatus_F_contig10163.190.1|Name=mRNA_H-canaliculatus_F_contig10163.190.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=368bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10163:4087..4454+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGTGTTCCTGCTACGAGCATTTTCGGCTCCTCGGATGACCGTTGTGCG
GAGCGTGCTTTCGTGCGGCAATCCCAAAAAAAATTCCTATGTTGGGATGT
GGAAACAAGAGAGCTTTGTTGCTACGGACGAGCTGTGTGGGTATTCCGCC
GGCCTCTTTGTCTTGTTTGAGGGCGCCTCTTCTTTTGTTTTCTCCTCTGG
AGGGCGTGGTCTGCCCACGGTTACAAAGTGCTCTGGGGACATTCCTCTCA
AAACTGCCCCGTGTGTAGACGCCAGGACAGCCGCAATAAGCGGCTCCAGA
TGGCCAAGAAACCTGCCCGGCTCTGAATCCTCCCTAACCCCAGTCCTTGG
GTATTGCCAGCGTGCTAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10163:4087..4454+

>mRNA_H-canaliculatus_F_contig10163.190.1 ID=mRNA_H-canaliculatus_F_contig10163.190.1|Name=mRNA_H-canaliculatus_F_contig10163.190.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10163:4087..4454+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGTGTTCCTGCTACGAGCATTTTCGGCTCCTCGGATGACCGTTGTGCG
GAGCGTGCTTTCGTGCGGCAATCCCAAAAAAAATTCCTATGTTGGGATGT
GGAAACAAGAGAGCTTTGTTGCTACGGACGAGCTGTGTGGGTATTCCGCC
GGCCTCTTTGTCTTGTTTGAGGGCGCCTCTTCTTTTGTTTTCTCCTCTGG
AGGGCGTGGTCTGCCCACGGTTACAAAGTGCTCTGGGGACATTCCTCTCA
AAACTGCCCCGTGTGTAGACGCCAGGACAGCCGCAATAAGCGGCTCCAGA
TGGCCAAGAAACCTGCCCGGCTCTGAATCCTCCCTAACCCCAGTCCTTGG
GTATTGCCAGCGTGCTGGTGTGTTCCTGCTACGAGCATTTTCGGCTCCTC
GGATGACCGTTGTGCGGAGCGTGCTTTCGTGCGGCAATCCCAAAAAAAAT
TCCTATGTTGGGATGTGGAAACAAGAGAGCTTTGTTGCTACGGACGAGCT
GTGTGGGTATTCCGCCGGCCTCTTTGTCTTGTTTGAGGGCGCCTCTTCTT
TTGTTTTCTCCTCTGGAGGGCGTGGTCTGCCCACGGTTACAAAGTGCTCT
GGGGACATTCCTCTCAAAACTGCCCCGTGTGTAGACGCCAGGACAGCCGC
AATAAGCGGCTCCAGATGGCCAAGAAACCTGCCCGGCTCTGAATCCTCCC
TAACCCCAGTCCTTGGGTATTGCCAGCGTGCT
back to top