mRNA_H-canaliculatus_F_contig12175.1876.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12175.1876.1
Unique NamemRNA_H-canaliculatus_F_contig12175.1876.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12175.1876.1 vs. uniprot
Match: A0A6H5KZP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP9_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 4.070e-54
Identity = 91/122 (74.59%), Postives = 102/122 (83.61%), Query Frame = 1 
Query:    1 LRRARSRHRAACGRTDGCMAPGCSALRKDVENKSFTDHLERELAQHFAMAAVQAEKMGMGNLRYTVTFYPNTCLVHVNLAPLVVTLVHKDGQDGG-DKLNFGDSLDLIPDLAEALEPLRVQV 363
            L+RA +      G  DG   P  +ALRKDVENKSFTDHLERELAQHFA+AAVQA+KMGMGNLRYTVTFYP  CLVHVNLAPLVVTLVH+DGQD   DKLNFGD+LDLIP++++ALEPLR QV
Sbjct:   17 LQRAPNVRAVLIGTADG--TPIVNALRKDVENKSFTDHLERELAQHFALAAVQADKMGMGNLRYTVTFYPQACLVHVNLAPLVVTLVHQDGQDDSRDKLNFGDALDLIPEMSDALEPLRKQV 136
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BLAST of mRNA_H-canaliculatus_F_contig12175.1876.1 vs. uniprot
Match: A0A836CDC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDC5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.610e-18
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:   49 GCMAPGCSALRKD--VENKSFTDHLERELAQHFAMAAVQAEKMGMGNLRYTVTFYPNTCLVHVNLAPLVVTLVHKDGQDGGDKLNFGDSLDLIPDLAEALEPLRVQV 363
            G   P C A+R    VE ++    +ER L+ + A AA QA+KMG+G L+ T T Y   CLVHV + PLV+T VH          N G +LD++P+L EAL+P+R QV
Sbjct:   15 GDGVPLCRAVRPGAAVEPEALAG-IERRLSHYCAAAAEQAQKMGLGPLKVTTTLYDKLCLVHVYMLPLVITCVHSPDS------NCGTTLDIVPELREALDPIRAQV 114
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BLAST of mRNA_H-canaliculatus_F_contig12175.1876.1 vs. uniprot
Match: A0A7S2APW0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APW0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.460e-11
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:   82 KDVENKSFTDHLERELAQHFAMAAVQAEKMGMGNLRYTVTFYPNTCLVHVNLAPLVVTLVHKDGQDGGDKLNFGDSLDLIPDLAEALEPL 351
            K  ++++F  + E  ++  F++ AVQ EKM +G +R    FY N  L+HVN++PLV+TL+ K G       N G  L ++P L E+LEP+
Sbjct:   40 KSTQSETFGSN-ELHMSALFSITAVQIEKMELGAVRSVTAFYQNMMLIHVNISPLVLTLIAKPGA------NAGALLAMVPSLNESLEPI 122
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BLAST of mRNA_H-canaliculatus_F_contig12175.1876.1 vs. uniprot
Match: A0A7S0MJ25_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MJ25_9CRYP)

HSP 1 Score: 54.3 bits (129), Expect = 6.980e-7
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:  127 LAQHFAMAAVQAEKMGMGNLRYTVTFYPNTCLVHVNLAPLVVTLVHKDGQDGGDKLNFGDSLDLIPDLAEALEPLRVQV 363
            L   FA+AA Q  K+ MG  +   T Y N  +VH+N++PL+VT+V          +N    L L P LA ALEP+R  V
Sbjct:   50 LESAFAIAADQVSKLEMGRSKTITTMYQNQVVVHMNMSPLIVTMV------SDSDVNIAVLLALAPKLALALEPIRSAV 122
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BLAST of mRNA_H-canaliculatus_F_contig12175.1876.1 vs. uniprot
Match: A0A7S2Y003_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y003_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.040e-6
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   76 LRKDVENKSFTDHLERELAQHFAMA-AVQAEKMGMGNLRYTVTFYPNTCLVHVNLAPLVVTLV 261
            L +    +   + LE  LA++FAMA A QA K+G+G L+    FY    LVHVNL+PLV+TLV
Sbjct:   46 LVESAGGRKPAEELESGLARYFAMAVADQAGKVGLGGLKTITAFYNTLALVHVNLSPLVLTLV 108
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BLAST of mRNA_H-canaliculatus_F_contig12175.1876.1 vs. uniprot
Match: A0A6V1R4B5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R4B5_HETAK)

HSP 1 Score: 52.8 bits (125), Expect = 3.760e-6
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:  115 LERELAQHFAMAAVQAEKMGMGNLRYTVTFYPNTCLVHVNLAPLVVTLVHKDGQDGGDKLNFGDSLDLIPDLAEALEPLRVQV 363
            LE  +A++FA AA QA KM +G L+    FY N  L H+NL PLVVTLV  D Q     +  G +     D+  AL P+   V
Sbjct:   58 LEAGVARYFAGAADQAGKMNLGQLQSITAFYENLMLYHINLLPLVVTLV-ADSQAAVGAVRAGAA-----DVRAALAPVAAVV 134
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BLAST of mRNA_H-canaliculatus_F_contig12175.1876.1 vs. uniprot
Match: K3X7C8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7C8_GLOUD)

HSP 1 Score: 50.8 bits (120), Expect = 1.700e-5
Identity = 34/107 (31.78%), Postives = 51/107 (47.66%), Query Frame = 1 
Query:   52 CMAPGCSALRKDVENKSFT---DHLERELAQHFAMAAVQAEKMGMGNLRYTVTFYPNTCLVHVNLAPLVVTLVHKDGQDGGDKLNFGDSLDLIPDLAEALEPLRVQV 363
            C + G   L+   + +  T   D+ E  L   FA AA Q  K+  G ++   +F+ N  L+H+N APLV+TLV        +  + G    L  +L  AL PL+  V
Sbjct:   30 CTSEGVPLLKVMADEEKATLAYDYAETVLPTVFAGAAEQIGKLKFGAVQTVTSFFDNVVLIHINNAPLVITLV------ASNSAHIGALQALASELRPALSPLKKAV 130
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12175.1876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KZP9_9PHAE4.070e-5474.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CDC5_9STRA5.610e-1843.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2APW0_9STRA6.460e-1138.89Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0MJ25_9CRYP6.980e-740.51Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S2Y003_9STRA1.040e-647.62Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6V1R4B5_HETAK3.760e-642.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3X7C8_GLOUD1.700e-531.78Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12175contigH-canaliculatus_F_contig12175:2066..3132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRagulator complex protein LAMTOR3
Ec32 orthologEc-18_001670.1
Exons2
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.5733235-CDS-H-canaliculatus_F_contig12175:2065..22241622928930.5733235-CDS-H-canaliculatus_F_contig12175:2065..2224Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12175 2066..2224 +
1696845617.031848-CDS-H-canaliculatus_F_contig12175:2065..22241696845617.031848-CDS-H-canaliculatus_F_contig12175:2065..2224Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12175 2066..2224 +
1622928930.5891404-CDS-H-canaliculatus_F_contig12175:2928..31321622928930.5891404-CDS-H-canaliculatus_F_contig12175:2928..3132Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12175 2929..3132 +
1696845617.047378-CDS-H-canaliculatus_F_contig12175:2928..31321696845617.047378-CDS-H-canaliculatus_F_contig12175:2928..3132Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12175 2929..3132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12175.1876.1prot_H-canaliculatus_F_contig12175.1876.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12175 2066..3132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12175.1876.1

>prot_H-canaliculatus_F_contig12175.1876.1 ID=prot_H-canaliculatus_F_contig12175.1876.1|Name=mRNA_H-canaliculatus_F_contig12175.1876.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
LRRARSRHRAACGRTDGCMAPGCSALRKDVENKSFTDHLERELAQHFAMA
AVQAEKMGMGNLRYTVTFYPNTCLVHVNLAPLVVTLVHKDGQDGGDKLNF
GDSLDLIPDLAEALEPLRVQV
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mRNA from alignment at H-canaliculatus_F_contig12175:2066..3132+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12175.1876.1 ID=mRNA_H-canaliculatus_F_contig12175.1876.1|Name=mRNA_H-canaliculatus_F_contig12175.1876.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1067bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12175:2066..3132+ (Hapterophycus canaliculatus Oshoro5f female)
CTTCGCCGTGCTCGGTCGCGACACCGCGCTGCGTGCGGACGGACGGACGG
ATGCATGGCGCCCGGGTGTTCAGCTTTGAGGAAGGATGTCGAGAACAAGA
GCTTCACCGACCACCTCGAGAGGGAGCTGGCGCAGCACTTCGCGATGGCC
GCGGTGCAGGTGCGTGCTGTCGATTTTGTCGCTCCCGCCGCCGAAATTGG
TTGCAGCGGGAACACGTGCGAGTCTGCAGACTTGAGCGTCGATCTTCTGC
CGAACCGTTGCTGCGCTTGTACTGTACGAAGTCAATCCCCAGATGTCTTA
GCGTAGTCTTTACCTCAAAGCGGGTGCGTCGTTCTGATCGAACGATTGTA
CTGTTCGAAGTCAATCCCCATGTCTTAGCGTAGTCTTTACCTCAAAGCGG
GTGCGTCGTTCTGATCGAACGGTTGTGGCCGACCGCGCTCCGATGCCGGG
ATTTAGCTGCTACCGCAGGTCTGCCCGACGTCGTCTGTGTGCCCCCTTGC
CCGAACCGGTACTCCTTTGTGCCTTCGCTTCGTCGCCCTCCCCTGTTGTT
GCTCTTCCTCCTTTCCCCACAAACCGCGCGTGCCCTCTCTCCCCATCGCG
CAGGACGCACCGTGTTCAAAATCTCATCGTCGCCTCGCGGACTCCGCCTT
CCCAGCGCTTCCTCTCAAAGTTTCTCCTTCATTTTCCTCCGTTTCCCCCC
CCTCCTTTCCCTGCCCGTCGTCCATCGTCCATCGTCCATTCTCTATCGCG
TATCATCCGACGCTCGTTTCTTGTCGTCGTTGCTGCCTCCGCTCTTGCTT
GTGCTTCCGTTTCTCCGTCGCTCCCCCGCCCCTCCTCTCTCCTCTCTCTT
CTCCCCCCCGCAGGCGGAAAAGATGGGAATGGGCAACCTCAGATACACGG
TCACGTTCTACCCGAACACCTGCCTGGTGCACGTCAACCTCGCACCGCTC
GTGGTGACGTTGGTCCACAAGGACGGCCAGGACGGCGGGGACAAGCTCAA
CTTCGGCGATTCTCTCGACCTGATCCCGGACTTGGCAGAAGCGCTGGAGC
CGCTTCGAGTACAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12175:2066..3132+

>mRNA_H-canaliculatus_F_contig12175.1876.1 ID=mRNA_H-canaliculatus_F_contig12175.1876.1|Name=mRNA_H-canaliculatus_F_contig12175.1876.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12175:2066..3132+ (Hapterophycus canaliculatus Oshoro5f female)
CTTCGCCGTGCTCGGTCGCGACACCGCGCTGCGTGCGGACGGACGGACGG
ATGCATGGCGCCCGGGTGTTCAGCTTTGAGGAAGGATGTCGAGAACAAGA
GCTTCACCGACCACCTCGAGAGGGAGCTGGCGCAGCACTTCGCGATGGCC
GCGGTGCAGCTTCGCCGTGCTCGGTCGCGACACCGCGCTGCGTGCGGACG
GACGGACGGATGCATGGCGCCCGGGTGTTCAGCTTTGAGGAAGGATGTCG
AGAACAAGAGCTTCACCGACCACCTCGAGAGGGAGCTGGCGCAGCACTTC
GCGATGGCCGCGGTGCAGGCGGAAAAGATGGGAATGGGCAACCTCAGATA
CACGGTCACGTTCTACCCGAACACCTGCCTGGTGCACGTCAACCTCGCAC
CGCTCGTGGTGACGTTGGTCCACAAGGACGGCCAGGACGGCGGGGACAAG
CTCAACTTCGGCGATTCTCTCGACCTGATCCCGGACTTGGCAGAAGCGCT
GGAGCCGCTTCGAGTACAGGTGGCGGAAAAGATGGGAATGGGCAACCTCA
GATACACGGTCACGTTCTACCCGAACACCTGCCTGGTGCACGTCAACCTC
GCACCGCTCGTGGTGACGTTGGTCCACAAGGACGGCCAGGACGGCGGGGA
CAAGCTCAACTTCGGCGATTCTCTCGACCTGATCCCGGACTTGGCAGAAG
CGCTGGAGCCGCTTCGAGTACAGGTG
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