mRNA_H-canaliculatus_F_contig12143.1854.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12143.1854.1
Unique NamemRNA_H-canaliculatus_F_contig12143.1854.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12143.1854.1 vs. uniprot
Match: D7FKB2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB2_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 1.200e-68
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1
Query:   52 QDASAGHPLEAMNKARIPNEFAFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 363
            QDASAGHPLEAMNKARIPNEF FKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM
Sbjct:   28 QDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 131          
BLAST of mRNA_H-canaliculatus_F_contig12143.1854.1 vs. uniprot
Match: A0A835YZL3_9STRA (Proteasome maturation factor UMP1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZL3_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.340e-39
Identity = 62/108 (57.41%), Postives = 86/108 (79.63%), Query Frame = 1
Query:   40 TTLRQDASAGHPLEAMNKARIPNEFAFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 363
            T+++Q+A   HP+EA+ ++R+  EF  KMD+A +VYGS F MR++TE A LSQAQ LPGL SS +GLETVLG DET++FED++  P ++P  P+F+VHEAMEI+YGL+
Sbjct:   21 TSMQQEAQDTHPVEAIQRSRVRGEFELKMDMAQRVYGSGFAMRLRTEAAALSQAQRLPGLLSSRVGLETVLGNDETLDFEDFMGTPENQPGEPKFKVHEAMEIKYGLL 128          
BLAST of mRNA_H-canaliculatus_F_contig12143.1854.1 vs. uniprot
Match: W7TNF3_9STRA (Proteasome maturation factor ump1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNF3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.260e-29
Identity = 57/118 (48.31%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    7 PTHPLRRNLSATTLRQDASAGHPLEAMNKARIPNEFAFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 360
            P   +R  L A   R +A A HP++A    R   EF  ++D   ++YG A  MR+KTE   LS+    PGLPSSM+GLETVLG DET+EFED L+ P +RP+ P   VHE ME + GL
Sbjct:   15 PVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132          
BLAST of mRNA_H-canaliculatus_F_contig12143.1854.1 vs. uniprot
Match: A0A7S2S4B2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4B2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.540e-22
Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 QRPTHPLRRNLSATTLRQDASAGHPLEAMNKARIPNEFAFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 360
            Q P   +R  L  TTL  ++  GHPLE        ++F+ K+D+  ++YGSA  MR++TE     Q Q LPGLPSS L L+TVLG D T++FED L+ P + P   +  +H+ +E ++GL
Sbjct:   11 QGPRDQMREGLQ-TTLAAESRQGHPLETRLAV---DDFSQKVDMVRRMYGSAAAMRLQTERLATEQIQRLPGLPSSFLALQTVLGEDCTLQFEDVLNDPFEAPVETKASLHDELEFKFGL 126          
BLAST of mRNA_H-canaliculatus_F_contig12143.1854.1 vs. uniprot
Match: A0A8K1CUT3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUT3_PYTOL)

HSP 1 Score: 93.6 bits (231), Expect = 3.630e-22
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   52 QDASAGHPLEAMNKARIPNEFAFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 360
            +D    HP++ +      N+F  KM    +VYG A  MR++TE A + Q   LPGLPSS +GL+TV G DE + F D+L+ P + PE   FRVHEAME++  +
Sbjct:   25 EDVRPVHPVQQLQTMHRRNQFELKMATVEQVYGKAAAMRLRTEKAVMEQFGRLPGLPSSRIGLDTVTGADEELNFSDFLNDPNEHPEH-NFRVHEAMEVKLSI 126          
BLAST of mRNA_H-canaliculatus_F_contig12143.1854.1 vs. uniprot
Match: A0A6U4HD01_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HD01_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.050e-22
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query:    7 PTHPLRRNLSATTLRQDASAGHPLEAMNKARIPNEFAFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 363
            P   +R  LS+    +     HP+E   + R  +E A K+D+   +YG+   M +KTEV   S    LPGL  S +GL+TVL  D  V FED L     RPE P+F++H AMEI++GL+
Sbjct:   15 PHDAMRNGLSSVA--EHTQGKHPVEEFQQIRASSELAGKVDMVRSIYGTGAAMGLKTEVQAFSADTRLPGLAQSRVGLDTVLNNDVKVGFEDVLGQEEHRPEPPKFQLHNAMEIKFGLL 131          
BLAST of mRNA_H-canaliculatus_F_contig12143.1854.1 vs. uniprot
Match: A0A067CYH8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYH8_SAPPC)

HSP 1 Score: 88.6 bits (218), Expect = 3.340e-20
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   52 QDASAGHPLEAMNKARIPNEFAFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 360
            QDA   H ++ +   R  + F  KM+   ++YG A  MR++TE   L Q   LPGLPSS +GL+T++G D+T++F D L+ P + PE   FRVH+AME++  +
Sbjct:   25 QDARPVHEVQRLEMHRRVHGFEAKMNSVEQIYGKAAAMRLRTEKIMLEQHVRLPGLPSSRVGLDTLMGNDDTLDFADILNEPQENPE-VHFRVHDAMEVKLAI 126          
BLAST of mRNA_H-canaliculatus_F_contig12143.1854.1 vs. uniprot
Match: A0A5A8EH03_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EH03_CAFRO)

HSP 1 Score: 88.6 bits (218), Expect = 4.960e-20
Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    7 PTHPLRRNLSATTLRQDASAGHPLEAMNKARIPNEFAFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 360
            PT  L R     ++R + +A HP+EAM +A    ++  ++  A +V+G    MRM+ + A LSQ Q  PGL S  +GL+T+LGRD TV FED LD P  R + P   VH+A++ + G+
Sbjct:   25 PTDKLSRG-GLRSMRHEMAAKHPIEAMQEAWHTQKWGNELHHAERVFGPGTAMRMRMDRAILSQFQRAPGLASDFVGLDTILGRDITVGFEDILDVPETRTDTPVETVHDALDRKLGI 141          
BLAST of mRNA_H-canaliculatus_F_contig12143.1854.1 vs. uniprot
Match: A0A1V9YHV6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YHV6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 9.480e-20
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   52 QDASAGHPLEAMNKARIPNEFAFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 360
            QD+ A H ++ +   +    F  KM+   ++YG A  MR++TE   L Q   +PGLPSS +GL+T+LG D+ ++F D L+ P++ PE   FRVH+AME++  +
Sbjct:   25 QDSRAVHEVQRLEMHQRLRGFEGKMNTVEQIYGKAAAMRLRTEKILLEQHVRMPGLPSSHVGLDTILGNDDVIDFTDVLNEPSENPEAT-FRVHDAMEVKLAI 126          
BLAST of mRNA_H-canaliculatus_F_contig12143.1854.1 vs. uniprot
Match: A0A7R9YBV5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBV5_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.650e-18
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   70 HPLEAMNKARIPNEFAFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 363
            HP+E      I  +   K+     ++G    M +K E+   SQ   LPGLPSS + L+T+L  DE + FED L    DRP+ P+F++H AMEI++G++
Sbjct:   33 HPVEEFQMNGITRQLDEKIKTVRMLHGIGAAMDLKAEIVACSQPTRLPGLPSSNVALDTLLNNDEKIRFEDVLGREEDRPDAPKFKLHSAMEIKFGML 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12143.1854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKB2_ECTSI1.200e-6899.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZL3_9STRA1.340e-3957.41Proteasome maturation factor UMP1 n=1 Tax=Tribonem... [more]
W7TNF3_9STRA2.260e-2948.31Proteasome maturation factor ump1 family protein n... [more]
A0A7S2S4B2_9STRA3.540e-2241.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K1CUT3_PYTOL3.630e-2243.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6U4HD01_9STRA4.050e-2240.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A067CYH8_SAPPC3.340e-2041.75Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A5A8EH03_CAFRO4.960e-2040.68Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A1V9YHV6_9STRA9.480e-2039.81Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7R9YBV5_9STRA1.650e-1838.78Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12143contigH-canaliculatus_F_contig12143:661..1510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.7
Seed ortholog evalue3.9e-52
Seed eggNOG ortholog2880.D7FKB2
KEGG koko:K11599
KEGG Pathwayko03050,map03050
GOsGO:0000003,GO:0001541,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005851,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007548,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009987,GO:0010001,GO:0010467,GO:0014003,GO:0016043,GO:0019538,GO:0021782,GO:0022008,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042063,GO:0042552,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048608,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051716,GO:0061458,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.proteasome assembly
EggNOG OGsKOG3061@1,KOG3061@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProteasome maturation factor UMP1
Ec32 orthologEc-05_005550.1
Exons2
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.2290475-CDS-H-canaliculatus_F_contig12143:660..8581622928928.2290475-CDS-H-canaliculatus_F_contig12143:660..858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12143 661..858 +
1696845615.8500257-CDS-H-canaliculatus_F_contig12143:660..8581696845615.8500257-CDS-H-canaliculatus_F_contig12143:660..858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12143 661..858 +
1622928928.2442386-CDS-H-canaliculatus_F_contig12143:1342..15101622928928.2442386-CDS-H-canaliculatus_F_contig12143:1342..1510Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12143 1343..1510 +
1696845615.8629992-CDS-H-canaliculatus_F_contig12143:1342..15101696845615.8629992-CDS-H-canaliculatus_F_contig12143:1342..1510Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12143 1343..1510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12143.1854.1prot_H-canaliculatus_F_contig12143.1854.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12143 661..1510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12143.1854.1

>prot_H-canaliculatus_F_contig12143.1854.1 ID=prot_H-canaliculatus_F_contig12143.1854.1|Name=mRNA_H-canaliculatus_F_contig12143.1854.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp
QRPTHPLRRNLSATTLRQDASAGHPLEAMNKARIPNEFAFKMDLAGKVYG
SAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPA
DRPEGPRFRVHEAMEIQYGLM*
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mRNA from alignment at H-canaliculatus_F_contig12143:661..1510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12143.1854.1 ID=mRNA_H-canaliculatus_F_contig12143.1854.1|Name=mRNA_H-canaliculatus_F_contig12143.1854.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=850bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12143:661..1510+ (Hapterophycus canaliculatus Oshoro5f female)
CAACGGCCAACACACCCACTGCGTCGAAATCTCTCCGCCACCACGCTACG ACAGGACGCATCCGCGGGACACCCCCTGGAGGCGATGAACAAGGCAAGGA TCCCGAACGAGTTCGCCTTCAAAATGGATCTCGCTGGAAAGGTGTACGGG AGCGCTTTCGTCATGCGGATGAAGACGGAGGTCGCCACTCTCTCCCAGGT GCTTCAGTCGTGCGCAGCCTTCGTGATGCTCTCGGCCCGGCACGGCGAAG CGAGCACCCTGTAGCGCAACAAAATCGGGAGCAGACGGGATTTTGCGGGG CCGCGGGGACTAGGTGCTCTATCCTGGCCCCCGCCTCCTCTCGTCCACTT CCGCAAACCACGTGCTTCCCCGCCTCGCAGCGCTCCGCACGCACCACCCC GTACGCATGAACTCGCCCCCTCCCGTCGGTGCTTTACCTCTGTTCACATG TTTTCTCGCCCTCCGGTCATCTTAGTCTGTGCCCTTTCATTTTGTACTGC CCGGCGAAGGTTTCCCGGACAGGAAAAACCCTCTGTTTTTGTCTCTCCGG AATCTCCCCTTCTTTCCACCATCGAAATCCACGATGACGGCGAACAAAAT ATGGCACTATCTTTTCATACACGCGCGCACACACACGCACACCTCCTCCA CCCCGATCCCCTCTACCCATCTTTTGCAACAGGCACAACATCTTCCCGGG TTGCCATCCTCTATGCTGGGACTAGAGACCGTCCTCGGTCGGGACGAGAC GGTGGAGTTCGAGGATTATCTCGACCCACCGGCAGACCGCCCCGAGGGGC CGCGGTTCCGCGTCCACGAGGCCATGGAGATTCAGTACGGCCTCATGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12143:661..1510+

>mRNA_H-canaliculatus_F_contig12143.1854.1 ID=mRNA_H-canaliculatus_F_contig12143.1854.1|Name=mRNA_H-canaliculatus_F_contig12143.1854.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12143:661..1510+ (Hapterophycus canaliculatus Oshoro5f female)
CAACGGCCAACACACCCACTGCGTCGAAATCTCTCCGCCACCACGCTACG
ACAGGACGCATCCGCGGGACACCCCCTGGAGGCGATGAACAAGGCAAGGA
TCCCGAACGAGTTCGCCTTCAAAATGGATCTCGCTGGAAAGGTGTACGGG
AGCGCTTTCGTCATGCGGATGAAGACGGAGGTCGCCACTCTCTCCCAGCA
ACGGCCAACACACCCACTGCGTCGAAATCTCTCCGCCACCACGCTACGAC
AGGACGCATCCGCGGGACACCCCCTGGAGGCGATGAACAAGGCAAGGATC
CCGAACGAGTTCGCCTTCAAAATGGATCTCGCTGGAAAGGTGTACGGGAG
CGCTTTCGTCATGCGGATGAAGACGGAGGTCGCCACTCTCTCCCAGGCAC
AACATCTTCCCGGGTTGCCATCCTCTATGCTGGGACTAGAGACCGTCCTC
GGTCGGGACGAGACGGTGGAGTTCGAGGATTATCTCGACCCACCGGCAGA
CCGCCCCGAGGGGCCGCGGTTCCGCGTCCACGAGGCCATGGAGATTCAGT
ACGGCCTCATGTAGGCACAACATCTTCCCGGGTTGCCATCCTCTATGCTG
GGACTAGAGACCGTCCTCGGTCGGGACGAGACGGTGGAGTTCGAGGATTA
TCTCGACCCACCGGCAGACCGCCCCGAGGGGCCGCGGTTCCGCGTCCACG
AGGCCATGGAGATTCAGTACGGCCTCATGTAG
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