mRNA_H-canaliculatus_F_contig121.1815.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig121.1815.1
Unique NamemRNA_H-canaliculatus_F_contig121.1815.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig121.1815.1 vs. uniprot
Match: D7G811_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G811_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.350e-32
Identity = 77/117 (65.81%), Postives = 90/117 (76.92%), Query Frame = 1 
Query:    1 ITGNKDTLLEAEERTRVAFATMEAKRQEQGKQFADKIAGVASEEMVRIETIELDIREQGRSFKEALETSQQTNRRRSEGIHGEVESLEGRLRTLIADAQEDDTSRIGSLLQQAQEQV 351
            IT NKD L EAEER R   A MEAKRQEQ KQFADKIAGV SEEM RI+ IEL + EQG + KEA ET  +TN+RRS+ I+ EV+ LEG LRT +ADAQED++ R+ SLL QAQEQ+
Sbjct:  584 ITTNKDLLREAEERARNGLAAMEAKRQEQAKQFADKIAGVESEEMARIQAIELAMAEQGNTLKEAFETGHRTNKRRSDEIYAEVKRLEGSLRTALADAQEDESERVNSLLHQAQEQI 700
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BLAST of mRNA_H-canaliculatus_F_contig121.1815.1 vs. uniprot
Match: A0A6H5KVY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY4_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 8.410e-26
Identity = 71/115 (61.74%), Postives = 82/115 (71.30%), Query Frame = 1 
Query:   16 DTLLEAEERTRVAFATMEAKRQEQGKQFADKIAGVASEEMVRIETIELDIREQGRSFKEALETSQQTNRRRSEGIHGEVESLEGRLRTLIADAQEDDTSRIGSLLQQAQEQVNGS 360
            + L EAEER R   A  E+KRQEQ KQFADKIA V S EM RIE IEL + EQG   KEA ET  +TN+RRS+ IH EV+ LEG LRT +ADAQE+ + R+  LL QAQEQVN S
Sbjct:  585 EPLREAEERARNGLAATESKRQEQAKQFADKIASVESSEMARIEAIELAMTEQGDILKEAFETGHRTNKRRSDEIHAEVKRLEGSLRTELADAQEE-SERVNYLLHQAQEQVNAS 698
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig121.1815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G811_ECTSI1.350e-3265.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVY4_9PHAE8.410e-2661.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig121contigH-canaliculatus_F_contig121:1227..2183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size759
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig121.1815.1prot_H-canaliculatus_F_contig121.1815.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig121 1488..1883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928922.1747785-UTR-H-canaliculatus_F_contig121:1226..12471622928922.1747785-UTR-H-canaliculatus_F_contig121:1226..1247Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig121 1227..1247 +
1696845613.2990124-UTR-H-canaliculatus_F_contig121:1226..12471696845613.2990124-UTR-H-canaliculatus_F_contig121:1226..1247Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig121 1227..1247 +
1622928922.188638-UTR-H-canaliculatus_F_contig121:1445..14871622928922.188638-UTR-H-canaliculatus_F_contig121:1445..1487Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig121 1446..1487 +
1696845613.3084793-UTR-H-canaliculatus_F_contig121:1445..14871696845613.3084793-UTR-H-canaliculatus_F_contig121:1445..1487Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig121 1446..1487 +
1622928922.2114024-UTR-H-canaliculatus_F_contig121:1883..21831622928922.2114024-UTR-H-canaliculatus_F_contig121:1883..2183Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig121 1884..2183 +
1696845613.330788-UTR-H-canaliculatus_F_contig121:1883..21831696845613.330788-UTR-H-canaliculatus_F_contig121:1883..2183Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig121 1884..2183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928922.1987615-CDS-H-canaliculatus_F_contig121:1487..18831622928922.1987615-CDS-H-canaliculatus_F_contig121:1487..1883Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 1488..1883 +
1696845613.3198125-CDS-H-canaliculatus_F_contig121:1487..18831696845613.3198125-CDS-H-canaliculatus_F_contig121:1487..1883Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 1488..1883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig121.1815.1

>prot_H-canaliculatus_F_contig121.1815.1 ID=prot_H-canaliculatus_F_contig121.1815.1|Name=mRNA_H-canaliculatus_F_contig121.1815.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=132bp
MEAKRQEQGKQFADKIAGVASEEMVRIETIELDIREQGRSFKEALETSQQ
TNRRRSEGIHGEVESLEGRLRTLIADAQEDDTSRIGSLLQQAQEQVNGSR
ALCDRKEYYVLTMICKPYTYRSTRTPKGESH*
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mRNA from alignment at H-canaliculatus_F_contig121:1227..2183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig121.1815.1 ID=mRNA_H-canaliculatus_F_contig121.1815.1|Name=mRNA_H-canaliculatus_F_contig121.1815.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=957bp|location=Sequence derived from alignment at H-canaliculatus_F_contig121:1227..2183+ (Hapterophycus canaliculatus Oshoro5f female)
ATCACCGGGAATAAAGATACAGTAAGTTCCCTTTGCTACTAGCTTCAGGA
GACCTCCTGACATTGTAGCATTGGTGTGAAGGATTTTGGAGCATGCCGCA
ATCCCTCAATGGAGGAAGCCCTATAATTCACGTGAGTAGGATTCGGACAA
TTTAATTTTGCCGTAGTTTTGTTTCTAACTTTGGGGCCTAAATGGTCACA
ACTTTTTCTTGCTTCTCAGCTGCTGGAGGCAGAGGAAAGAACTCGCGTCG
CCTTCGCAACGATGGAGGCCAAGCGTCAGGAGCAAGGCAAGCAGTTTGCT
GACAAGATTGCCGGTGTTGCATCGGAGGAGATGGTCCGGATAGAGACGAT
AGAGCTAGACATAAGAGAGCAGGGAAGAAGTTTCAAAGAGGCGCTTGAGA
CCAGCCAGCAGACCAATAGAAGGCGCTCGGAGGGGATCCATGGAGAGGTG
GAGAGTCTAGAGGGCAGGTTAAGGACGCTTATCGCGGATGCCCAGGAGGA
CGACACTTCGAGGATTGGCTCTTTACTTCAACAGGCCCAGGAGCAGGTGA
ATGGATCTCGCGCACTTTGTGACCGCAAAGAATATTACGTGTTGACCATG
ATCTGCAAACCATACACCTATCGATCAACCCGAACACCAAAGGGAGAGAG
CCATTGACGAACAACACGAGTGCAATACCCAGCGGTATGCAGCAAGATAG
GGCGTGTAGATCCAATCAAAAATGTCTAAAGCTTGCGAGACTGCGACCCA
AACTTTTTATCATTATCATGCTTCATGATGCCGACAATGCTGTACCCATC
TCCAATGCGCCGACTGCGTTGCAAGCAATGCGATTTTTTCTCTCGGTCAC
CTTGACGTGTAACGTTCCTCATGCGAAACGCCCAGATCAATCGCGACATA
GCTAGAATTCGTCAAAGCACCGACAAGAACACGATGGAGGTCAATGTAAG
TACGAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig121:1227..2183+

>mRNA_H-canaliculatus_F_contig121.1815.1 ID=mRNA_H-canaliculatus_F_contig121.1815.1|Name=mRNA_H-canaliculatus_F_contig121.1815.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=792bp|location=Sequence derived from alignment at H-canaliculatus_F_contig121:1227..2183+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGCCAAGCGTCAGGAGCAAGGCAAGCAGTTTGCTGACAAGATTGC
CGGTGTTGCATCGGAGGAGATGGTCCGGATAGAGACGATAGAGCTAGACA
TAAGAGAGCAGGGAAGAAGTTTCAAAGAGGCGCTTGAGACCAGCCAGCAG
ACCAATAGAAGGCGCTCGGAGGGGATCCATGGAGAGGTGGAGAGTCTAGA
GGGCAGGTTAAGGACGCTTATCGCGGATGCCCAGGAGGACGACACTTCGA
GGATTGGCTCTTTACTTCAACAGGCCCAGGAGCAGGTGAATGGATCTCGC
GCACTTTGTGACCGCAAAGAATATTACGTGTTGACCATGATCTGCAAACC
ATACACCTATCGATCAACCCGAACACCAAAGGGAGAGAGCCATTGAATGG
AGGCCAAGCGTCAGGAGCAAGGCAAGCAGTTTGCTGACAAGATTGCCGGT
GTTGCATCGGAGGAGATGGTCCGGATAGAGACGATAGAGCTAGACATAAG
AGAGCAGGGAAGAAGTTTCAAAGAGGCGCTTGAGACCAGCCAGCAGACCA
ATAGAAGGCGCTCGGAGGGGATCCATGGAGAGGTGGAGAGTCTAGAGGGC
AGGTTAAGGACGCTTATCGCGGATGCCCAGGAGGACGACACTTCGAGGAT
TGGCTCTTTACTTCAACAGGCCCAGGAGCAGGTGAATGGATCTCGCGCAC
TTTGTGACCGCAAAGAATATTACGTGTTGACCATGATCTGCAAACCATAC
ACCTATCGATCAACCCGAACACCAAAGGGAGAGAGCCATTGA
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