mRNA_H-canaliculatus_F_contig12038.1780.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12038.1780.1
Unique NamemRNA_H-canaliculatus_F_contig12038.1780.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 412 bits (1058), Expect = 2.610e-129
Identity = 208/223 (93.27%), Postives = 216/223 (96.86%), Query Frame = 1
Query:    1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGHNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
            VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAV+ DICTTLRIP K GV+VGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLD+GSVVVYVWRQVTAEAVC+LLQGDGHNAVAYHGGMEAGARQ+AQ+AFMRGR+RVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ +   GRD
Sbjct: 1597 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVVEDICTTLRIPRKHGVKVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDKGSVVVYVWRQVTAEAVCALLQGDGHNAVAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQEIGRAGRD 1819          
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 410 bits (1053), Expect = 1.080e-128
Identity = 207/223 (92.83%), Postives = 215/223 (96.41%), Query Frame = 1
Query:    1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGHNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
            VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAV+ DICTTLRIP K GV+VGSWDRPNLDVRVLRSASDDDKRS LSRLLQEAPLD+GSVVVYVWRQVTAEAVC+LLQGDGHNAVAYHGGMEAGARQ+AQ+AFMRGR+RVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ +   GRD
Sbjct: 1451 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVVEDICTTLRIPRKDGVKVGSWDRPNLDVRVLRSASDDDKRSSLSRLLQEAPLDKGSVVVYVWRQVTAEAVCALLQGDGHNAVAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQEIGRAGRD 1673          
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: A0A835Z8Q0_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q0_9STRA)

HSP 1 Score: 263 bits (672), Expect = 3.340e-79
Identity = 137/223 (61.43%), Postives = 163/223 (73.09%), Query Frame = 1
Query:    1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGHNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
            VLF+SPE+LCS +F+RLA+  G LPPVSLLC+DEAHC+SQWSHNFRPSYLRL      L  R VLALTATAS+AV+ ++C +L IP  G VRVGSW RPNL V V R A D  KR  L  L+ +     G+ +VYVWRQV+AE V   LQ +GH+A AYH GM+AG R K Q+AFMR R RV+VATVAFGLGVDM  +R V+H+D P S+E YVQ V   GRD
Sbjct:   78 VLFVSPERLCSAAFQRLAAARGVLPPVSLLCLDEAHCMSQWSHNFRPSYLRLRTEAAALNARCVLALTATASRAVVSELCASLSIPACG-VRVGSWQRPNLRVAVQRVADDAAKRRVLRALMAQPAFGDGACIVYVWRQVSAEVVAEFLQSEGHSAAAYHAGMDAGERAKVQAAFMRRRVRVMVATVAFGLGVDMACVRAVIHYDAPSSLEGYVQEVGRAGRD 299          
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.910e-64
Identity = 124/237 (52.32%), Postives = 156/237 (65.82%), Query Frame = 1
Query:    1 VLFLSPEKLCSPSFRRLASTPG-----ALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLD-LLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDD-KRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGHNAVAYHGGMEAGARQKAQSAFMR-------GRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQVCS-CGRD 666
            +LF+SPEKLCSPSFRRL            PPV+L+C+DEAHC+SQWSHNFRP++LRLG  ++ LLRPR +LA+TATA   V+ DIC+ L I    GV    W R NL +R+     D + KR  +  LL  AP D+GSV+VYV +Q  AE +   L  +G +AVAYH GM+   R  AQ A+MR       GRARV VAT+AFGLGVD  D+R V+H++MPKS+EN VQ     GRD
Sbjct: 1112 ILFVSPEKLCSPSFRRLVENENDAVGRGFPPVALVCIDEAHCISQWSHNFRPAFLRLGHNIERLLRPRALLAMTATADPGVMKDICSRLSISSDAGVLAQPWRRHNLRLRIQLLDGDAELKRRHILNLLSNAPYDQGSVIVYVRQQKDAEILKDFLVSEGQSAVAYHAGMDMRHRDMAQGAWMRRRITGSGGRARVCVATIAFGLGVDKGDVRAVLHYEMPKSVENLVQETGRAGRD 1348          
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: B8CFG9_THAPS (DNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFG9_THAPS)

HSP 1 Score: 196 bits (497), Expect = 3.200e-58
Identity = 116/236 (49.15%), Postives = 143/236 (60.59%), Query Frame = 1
Query:    1 VLFLSPEKLCSPSFRRLASTP---------GALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLL--QEAPLDRGSVVVYVWRQVTAEAVCSLLQGDG--HNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
            VLF+SPE+L S +FRRL                P VSLLCVDEAHC+SQW HNFRPSYLR+   L L+ P+ +LALTATA   V+ DIC TL IP  G    G   + +L   +    S D    R+ + L   E  L +GSV+VYVWRQ   E V   L G G     V YHGGME+  R KAQS F+RG+AR+ VATVAFGLG++  DI GV+H  +P S E+Y+Q +   GRD
Sbjct:   96 VLFVSPERLASAAFRRLVRPKFNVETRQYERQFPTVSLLCVDEAHCLSQWGHNFRPSYLRVRSLLPLIEPKSILALTATAGPMVVRDICNTLCIPFDGR---GLNSKVSLPPFISSQVSKDSDGVRVVKSLPVDEGCLSKGSVIVYVWRQKDTEIVADQLIGAGVAGGVVCYHGGMESNDRTKAQSKFLRGKARICVATVAFGLGINKPDIEGVIHLCLPPSPEHYLQEIGRAGRD 328          
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: A0A5A8ECU5_CAFRO (DNA helicase n=9 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ECU5_CAFRO)

HSP 1 Score: 205 bits (522), Expect = 2.710e-57
Identity = 121/230 (52.61%), Postives = 152/230 (66.09%), Query Frame = 1
Query:    1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLD-LLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSR-LSRLLQEA--PLDRG---SVVVYVWRQVTAEAVCSLLQGDGHNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
            VLF+SPE+L +PSFRRLA+ P + PPV++L +DEAHCV++W HNFRP+YLRL    + +LRPR  LALTATA+   +  +C +L +P +GGVRVG W RPNL +    S  + D R R L RLL +A  PL      SV+VYV RQ  AEAV   L+  G  A  YH GM    R + Q  F  G  RVVVATVAFGLG+D  D+RGVVH+  P+S E+Y+Q V   GRD
Sbjct:  582 VLFVSPERLLAPSFRRLAADPLSFPPVAMLAIDEAHCVTEWGHNFRPAYLRLRAAAERVLRPRCTLALTATATPRAVSGVCGSLSLP-EGGVRVGDWHRPNLFLSA--SKEEGDLRPRALVRLLSDADSPLSARAAPSVIVYVQRQREAEAVADGLRSRGVGAAPYHAGMGPSQRARTQRRFTGGTLRVVVATVAFGLGIDKADVRGVVHWGAPRSPEDYLQQVGRAGRD 808          
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: B7G345_PHATC (DNA helicase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G345_PHATC)

HSP 1 Score: 204 bits (518), Expect = 9.340e-57
Identity = 119/257 (46.30%), Postives = 155/257 (60.31%), Query Frame = 1
Query:    1 VLFLSPEKLCSPSFRRL---------ASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLK------GGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLL-----------------QEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGHNA--VAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
            +LF+SPE+L S SFRRL                PPVSLLCVDEAHC+SQW+HNFRPSYLRL   +++++P  VLA+TATA   V+ DIC TL I          GVRV   +R N+DVR L   S  ++  ++ ++L                  +  L  G+V+VYVWRQ+ A+AV   LQ  G     V YHGGM+A AR KAQS FMRG+AR+ VATVAFGLG++  D+ GV+H  +  S E+Y+Q +   GRD
Sbjct:  822 ILFVSPERLTSASFRRLFRPIWNTDRREHERKFPPVSLLCVDEAHCLSQWAHNFRPSYLRLKSMVNMIQPESVLAITATAGPKVVTDICRTLNIDKNMSEEADNGVRVMKCNRDNIDVRCLLLTSQTERLKKVIKILTPKKKRTSNKSVAPEVSDDGCLATGNVIVYVWRQLDAQAVAENLQAAGIEGGIVIYHGGMDASARSKAQSKFMRGKARICVATVAFGLGINKEDVTGVIHMYLSASPEHYMQEIGRAGRD 1078          
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: A0A3L6VVH4_9STRA (DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VVH4_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.640e-56
Identity = 112/224 (50.00%), Postives = 147/224 (65.62%), Query Frame = 1
Query:    1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGH-NAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
            +LF+SPE++ +  F RL +       VSL+C+DEAHCVS+WSHNFRP++LRLG+     R   VLALTATAS AV  DI   L IP   G+   S  RPNLD+ V R   DDD+ + L  LL  APL++GSV+VYV  Q  A  V +LL  + +  A AYH G+ +  ++K Q  F  G+ RVVVAT+AFG+G+D  ++RGVVHF MP S+E+YVQ +   GRD
Sbjct:   70 LLFVSPERVVTAGFARLLARVH----VSLVCIDEAHCVSEWSHNFRPAFLRLGRVTR--RATNVLALTATASVAVTRDIVRILEIPTDQGIHRCSAYRPNLDLHVQRIQHDDDRYAALRTLLTTAPLNKGSVIVYVHTQYAAAQVAALLTTEANIKASAYHAGLSSDVKEKVQKGFASGKVRVVVATIAFGMGIDKANVRGVVHFHMPTSMEHYVQHIGRAGRD 287          
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: A0A7S2Q2M5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q2M5_9STRA)

HSP 1 Score: 202 bits (513), Expect = 4.430e-56
Identity = 123/271 (45.39%), Postives = 155/271 (57.20%), Query Frame = 1
Query:    1 VLFLSPEKLCSPSFRRLASTPGAL---------PPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKG-------------------GVRVGSWDRPNLDV----------------RVLRSASDDDKRSRLSRLL--QEAPLDRGSVVVYVWRQVTAEAVCSLLQGDG--HNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
            VLF+SPE+L S +FRRL      L         P VSLLCVDEAHC+SQW HNFRPSYLR+   + L++P+ VLALTATA   V+ DIC TL IP  G                   GV+V + +R N+DV                ++L+    DD   R S+ L  +E  L +GSV++YVWRQ   E V   L G G     V YHGGM A  R KAQS F+RG+AR+ VATVAFGLG++  DI GV+H  +P S E+Y+Q +   GRD
Sbjct:  947 VLFVSPERLASAAFRRLMRPKFNLETRQYERQFPEVSLLCVDEAHCLSQWGHNFRPSYLRVRSLMSLIQPKSVLALTATAGPMVVKDICNTLCIPFDGQCTINDEIPSSLDSTSNGVGVKVLNCNRDNIDVFSLVLQDQDERRYLVHKLLKEKKSDDSDRRQSKKLPIEEGCLSKGSVIIYVWRQKDTEIVAEQLNGAGVLGGVVCYHGGMNANDRSKAQSKFLRGKARICVATVAFGLGINKADIEGVIHLCLPPSPEHYLQEIGRAGRD 1217          
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: W4G2T7_9STRA (DNA helicase n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2T7_9STRA)

HSP 1 Score: 199 bits (506), Expect = 3.440e-55
Identity = 112/224 (50.00%), Postives = 147/224 (65.62%), Query Frame = 1
Query:    1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGH-NAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
            +LF+SPE++ +  F RL +       VSL+C+DEAHCVS+WSHNFRP++LRLG+     R   VLALTATAS AV  DI   L IP   G+   S  RPNLD+ V R   DDD+ + L  LL  APL++GSV+VYV  Q  A  V +LL  + +  A AYH G+ +  ++K Q  F  G+ RVVVAT+AFG+G+D  ++RGVVHF MP S+E+YVQ +   GRD
Sbjct:  537 LLFVSPERVVTAGFARLLARVH----VSLVCIDEAHCVSEWSHNFRPAFLRLGRVTR--RATNVLALTATASVAVTRDIVRILEIPTDRGIHRCSAYRPNLDLHVQRIQHDDDRYAALRTLLTTAPLNKGSVIVYVHTQYAAAQVAALLTTEANIKASAYHAGLSSDVKEKVQKGFASGKVRVVVATIAFGMGIDKANVRGVVHFHMPTSMEHYVQHIGRAGRD 754          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFV2_9PHAE2.610e-12993.27DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G8A0_ECTSI1.080e-12892.83DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A835Z8Q0_9STRA3.340e-7961.43DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
W7TAC7_9STRA3.910e-6452.32DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
B8CFG9_THAPS3.200e-5849.15DNA helicase (Fragment) n=1 Tax=Thalassiosira pseu... [more]
A0A5A8ECU5_CAFRO2.710e-5752.61DNA helicase n=9 Tax=Cafeteria roenbergensis TaxID... [more]
B7G345_PHATC9.340e-5746.30DNA helicase n=1 Tax=Phaeodactylum tricornutum (st... [more]
A0A3L6VVH4_9STRA1.640e-5650.00DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci... [more]
A0A7S2Q2M5_9STRA4.430e-5645.39Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
W4G2T7_9STRA3.440e-5550.00DNA helicase n=6 Tax=Aphanomyces astaci TaxID=1120... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12038contigH-canaliculatus_F_contig12038:150..2955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score414.8
Seed ortholog evalue2.5e-113
Seed eggNOG ortholog2880.D7G8A0
KEGG koko:K10730,ko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size666
Cds size666
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12038.1780.1prot_H-canaliculatus_F_contig12038.1780.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12038 150..2955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.9648762-CDS-H-canaliculatus_F_contig12038:149..3201622928914.9648762-CDS-H-canaliculatus_F_contig12038:149..320Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12038 150..320 +
1696845611.24111-CDS-H-canaliculatus_F_contig12038:149..3201696845611.24111-CDS-H-canaliculatus_F_contig12038:149..320Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12038 150..320 +
1622928914.980366-CDS-H-canaliculatus_F_contig12038:1400..15661622928914.980366-CDS-H-canaliculatus_F_contig12038:1400..1566Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12038 1401..1566 +
1696845611.2518654-CDS-H-canaliculatus_F_contig12038:1400..15661696845611.2518654-CDS-H-canaliculatus_F_contig12038:1400..1566Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12038 1401..1566 +
1622928915.000885-CDS-H-canaliculatus_F_contig12038:2626..29551622928915.000885-CDS-H-canaliculatus_F_contig12038:2626..2955Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12038 2627..2955 +
1696845611.260363-CDS-H-canaliculatus_F_contig12038:2626..29551696845611.260363-CDS-H-canaliculatus_F_contig12038:2626..2955Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12038 2627..2955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12038.1780.1

>prot_H-canaliculatus_F_contig12038.1780.1 ID=prot_H-canaliculatus_F_contig12038.1780.1|Name=mRNA_H-canaliculatus_F_contig12038.1780.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=222bp
VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYL
RLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPN
LDVRVLRSASDDDKRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQ
GDGHNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRG
VVHFDMPKSIENYVQVCSCGRD
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mRNA from alignment at H-canaliculatus_F_contig12038:150..2955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12038.1780.1 ID=mRNA_H-canaliculatus_F_contig12038.1780.1|Name=mRNA_H-canaliculatus_F_contig12038.1780.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2806bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12038:150..2955+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCTGTTCTTGTCTCCGGAGAAGCTCTGCTCTCCCTCCTTCCGCCGCCT GGCCTCCACGCCTGGCGCCCTTCCTCCCGTATCACTCCTGTGCGTGGACG AGGCGCATTGCGTCTCCCAGTGGTCGCACAACTTCAGGCCTTCCTACCTC CGGCTCGGGCAGACCTTGGACGTGAGTTCTGGCGGCGGAGCGTGGGGGCG AAGTTAGAGTTGCCCACCGATAAACCTGCGCGTCGCATGTGCAGGCGCGA GGCTGGTGGGAAAGCCGGAGGCGAAGCTGCTCCCCGGCACCCGCGTTGTA TGCATAGGCGCGAGGCTCTTGGCAGAGTTGGAGGCAAAGTTGCTCCCCGG CACCCGCGTTGTATGCGTGGGCGCGAGGCTTGGGGGAAAGTTGGAGGCGA AGCTGCTACCCGGCACCCGCGTTGCATGCGTGGGCGCGAGGCTGGGGGGA AAGTTGGAGGCAAAGCTGCTCCCCGGCACCTACATGCGTGTAATGTTCTA CGCGGTGGTGGTCGGATTGTGGAGACCGGAACCGGTCTGCACCCGAAAGC CGGGGCTGCTCCCTCGCGTAACCGTTTGGCTCCGACATTCGTGAGATTTC TGTGTTCGAGCTCGTCTGCTGAGGACTGATCCGAAGCCGGGGGGGGGGGG TCCTGTTGCGTCCACCTCGCAGGGTCTCCGGACGTCGTGGAAGGGGATGC CCCCGCCCGACGGGCTGGCTTGAGTTTGTGGGCCCGTTCACCTCCCCGAG ACCCCAGCGCTCGCCATCTTTGTCACTCGGCTCTTTCTATCTCCTCACGC TCGTTCAAACCCGGAAAATCGTGTTCCTGTACGAAGCGGCCCTGCAACGA CCGCTTCAAACTTGAGACAAGAGCGGGCTGCAGAAGAATTCTGCCCCCCC CCCCCCGGGACACCTGTTGACCCCTCTCCTCAAGTAGGTGTAGCTGTTGT CTCTTTTCCTGCTCTTCGTGGGCTGCCTCCTCCGAAACCACAGCGTTAGC GCATCTCCGAGGCCGCCCTTCCCCCTCTGGCGAAACGCGTGAGAGGCGTT TGCACCCCACTGGACCCCCTAGTTCCCACCCATTCCCCCCAACCCACGAC CCCCCCCTCTTTCACCACCCAACGGCCGTTCCTTCAACCATACGAACGGT CTTGTTCCTCTCCGTTCTTGCCCAGTTTCACAAGCGGAAGACGCACATGC GCGCGTCCGTCCCTGTCCCTCCTTTCCCCCCCTCGTCCCTCGAAATCACA GCTGCTGCGCCCCCGAGGCGTCCTCGCGCTGACGGCGACGGCGAGCAAGG CGGTGATCGGCGACATCTGTACCACCCTCCGGATCCCCCTGAAGGGGGGC GTCAGGGTCGGCTCGTGGGACAGGCCGAACTTGGACGTTCGGGTGCTACG TTCCGCTTCCGACGACGGTGAGCGCGTGTTGGTTTGCGGGGTGGTTTCGA CCAAGCGTTGAGAGCTGCTCTCAGGCGAGGTCGGGGCCGCCGCGTGTGAA AGCGCGGTGCTGCCGTTCTGGGCCGGGCCGGCGGCTTGCCGGTGGCGTGG GAGAGGCGGCTGCGGCTGGGGGCGTCGCTGGATCGGGGAGTGGTGCGGAG ACGCGGCGACTTCGTGTCGGCAACAGCGCGGCGTGGTGGCGGTTGATCGT TTCGTGTGTCTGTCCGCGCCAGAGACGAGAGTGCCCAGGCGCGTTGCCTG TGCCTATTCACCCTAACGATAACGCCTCCGCCGACGCGAGAGTTCGCGAG CGGGGGAGAGAGTCGGGTCGATGTGTTGGCCGTGTGACGGCCAGCTGCGG GCGCGCAAGGTGTAGGGGTTCGCAGCATCTCCGTCGATCCAGCCCGCATC GGATGACGCCGGCCGTGTGGTTGCGTCGTCGTCTCGTGGAAGGCGGAGAT GCCGGCCTCTCCCGGCCATCTTGCGACGGTTGGTGCCTTCAAAAAATCGT CGCTGCTTTGGTGGGTGGGTACGAAGTGCGACGTCACCTTCTCCGCATGG GAGCGCTGCTGGCGCATCGCCAGGGCGAAATAACGAGCAACTCTTACGTG TATCGAACGAGAGGGAGGGCGAGTTTCGTGTCGGCGCGCACCCTCAGGCC GCGTAGGCTGCGCCTGAGACGGCGGAGAGCGTGGCATAAACCTTGGCTAC AGGGAAAGGCTGCGCCGGGTGTTCGGGCTCCTGTTGTGCCTGTCCGTCCA CCCGCCAGTTTGTCCCGCATGCGCGCGTGACGAGAAAAGAGGCGCCGCGC GGAGTTATCATCCGGCGCGAGCAGGCGGCACAGAGAAAGCATGCCTGCGC TCAACCCATGCCGTAGGAAATCAGGCCCCACGAGTCTACTCCGAGCACCG CAACGTACATCGTCATTCCCTGCTAGCCAGCCGTCACGACGTGCATCTAC GTGACACCACCCCGTTTGTCTTCGTCACTCGCTACCCTCCCCGCGGATTG TCCACCCCCGCACATTTACACACACAGACAAGCGAAGCCGGCTGTCCAGG CTGCTGCAAGAAGCGCCGCTGGACAGGGGCTCCGTGGTCGTCTACGTCTG GCGGCAAGTCACGGCGGAGGCCGTCTGCTCCTTGCTCCAGGGGGACGGCC ACAACGCCGTCGCCTACCACGGAGGCATGGAGGCGGGGGCCAGGCAGAAG GCACAGAGCGCGTTCATGAGGGGCCGGGCGCGGGTGGTGGTGGCGACGGT GGCGTTCGGGCTCGGGGTGGACATGCGGGACATCAGGGGCGTGGTGCACT TCGACATGCCCAAGAGCATCGAGAACTACGTCCAGGTGTGTTCTTGCGGG CGTGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12038:150..2955+

>mRNA_H-canaliculatus_F_contig12038.1780.1 ID=mRNA_H-canaliculatus_F_contig12038.1780.1|Name=mRNA_H-canaliculatus_F_contig12038.1780.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1332bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12038:150..2955+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCTGTTCTTGTCTCCGGAGAAGCTCTGCTCTCCCTCCTTCCGCCGCCT
GGCCTCCACGCCTGGCGCCCTTCCTCCCGTATCACTCCTGTGCGTGGACG
AGGCGCATTGCGTCTCCCAGTGGTCGCACAACTTCAGGCCTTCCTACCTC
CGGCTCGGGCAGACCTTGGACGTGCTGTTCTTGTCTCCGGAGAAGCTCTG
CTCTCCCTCCTTCCGCCGCCTGGCCTCCACGCCTGGCGCCCTTCCTCCCG
TATCACTCCTGTGCGTGGACGAGGCGCATTGCGTCTCCCAGTGGTCGCAC
AACTTCAGGCCTTCCTACCTCCGGCTCGGGCAGACCTTGGACCTGCTGCG
CCCCCGAGGCGTCCTCGCGCTGACGGCGACGGCGAGCAAGGCGGTGATCG
GCGACATCTGTACCACCCTCCGGATCCCCCTGAAGGGGGGCGTCAGGGTC
GGCTCGTGGGACAGGCCGAACTTGGACGTTCGGGTGCTACGTTCCGCTTC
CGACGACGCTGCTGCGCCCCCGAGGCGTCCTCGCGCTGACGGCGACGGCG
AGCAAGGCGGTGATCGGCGACATCTGTACCACCCTCCGGATCCCCCTGAA
GGGGGGCGTCAGGGTCGGCTCGTGGGACAGGCCGAACTTGGACGTTCGGG
TGCTACGTTCCGCTTCCGACGACGACAAGCGAAGCCGGCTGTCCAGGCTG
CTGCAAGAAGCGCCGCTGGACAGGGGCTCCGTGGTCGTCTACGTCTGGCG
GCAAGTCACGGCGGAGGCCGTCTGCTCCTTGCTCCAGGGGGACGGCCACA
ACGCCGTCGCCTACCACGGAGGCATGGAGGCGGGGGCCAGGCAGAAGGCA
CAGAGCGCGTTCATGAGGGGCCGGGCGCGGGTGGTGGTGGCGACGGTGGC
GTTCGGGCTCGGGGTGGACATGCGGGACATCAGGGGCGTGGTGCACTTCG
ACATGCCCAAGAGCATCGAGAACTACGTCCAGGTGTGTTCTTGCGGGCGT
GACACAAGCGAAGCCGGCTGTCCAGGCTGCTGCAAGAAGCGCCGCTGGAC
AGGGGCTCCGTGGTCGTCTACGTCTGGCGGCAAGTCACGGCGGAGGCCGT
CTGCTCCTTGCTCCAGGGGGACGGCCACAACGCCGTCGCCTACCACGGAG
GCATGGAGGCGGGGGCCAGGCAGAAGGCACAGAGCGCGTTCATGAGGGGC
CGGGCGCGGGTGGTGGTGGCGACGGTGGCGTTCGGGCTCGGGGTGGACAT
GCGGGACATCAGGGGCGTGGTGCACTTCGACATGCCCAAGAGCATCGAGA
ACTACGTCCAGGTGTGTTCTTGCGGGCGTGAC
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