mRNA_H-canaliculatus_F_contig1200.1760.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1200.1760.1
Unique NamemRNA_H-canaliculatus_F_contig1200.1760.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1200.1760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1200contigH-canaliculatus_F_contig1200:25799..26413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size616
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.5289204-CDS-H-canaliculatus_F_contig1200:25798..264131622928911.5289204-CDS-H-canaliculatus_F_contig1200:25798..26413Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1200 25799..26413 +
1696845609.6370926-CDS-H-canaliculatus_F_contig1200:25798..264131696845609.6370926-CDS-H-canaliculatus_F_contig1200:25798..26413Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1200 25799..26413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1200.1760.1prot_H-canaliculatus_F_contig1200.1760.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1200 25799..26413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1200.1760.1

>prot_H-canaliculatus_F_contig1200.1760.1 ID=prot_H-canaliculatus_F_contig1200.1760.1|Name=mRNA_H-canaliculatus_F_contig1200.1760.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=205bp
VFRRRSFRHGWCKQILGLGSDWTGFDRFLLILRSDKEKDFAFMTPENHGT
HEPRVYALARGFRRLQTVRFRSSFIFFFAPEKAIKKKMSFLVMLSCSRLH
ILAKQRNTTTFVGGVQTVCTRQAQAINTFIFQTLQYIKELRFDAVSHKMR
QSNVRLNLGWVRRVDRNGASNPPWHFFNGGTTNTTTVAWGLNFTTLTLLR
PVIAD
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mRNA from alignment at H-canaliculatus_F_contig1200:25799..26413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1200.1760.1 ID=mRNA_H-canaliculatus_F_contig1200.1760.1|Name=mRNA_H-canaliculatus_F_contig1200.1760.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=615bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1200:25799..26413+ (Hapterophycus canaliculatus Oshoro5f female)
GTTTTTCGGCGTCGTTCGTTCCGCCATGGTTGGTGCAAACAGATTTTGGG
ATTGGGGTCTGATTGGACAGGGTTCGACCGATTCTTGTTGATTCTGCGGT
CGGACAAGGAAAAAGATTTTGCTTTCATGACTCCAGAAAACCATGGTACG
CACGAACCACGCGTGTACGCTCTAGCTCGGGGGTTCAGGCGACTGCAAAC
CGTCCGTTTCAGGAGTTCGTTTATCTTTTTCTTCGCTCCAGAGAAAGCCA
TAAAGAAGAAAATGAGCTTTCTTGTCATGTTGTCGTGTTCTCGACTTCAT
ATCCTCGCAAAACAGCGGAACACGACAACTTTTGTCGGGGGTGTTCAAAC
GGTATGTACACGACAAGCACAAGCAATCAACACGTTCATCTTCCAGACGT
TACAGTACATCAAAGAGTTACGTTTTGATGCAGTCTCTCACAAAATGAGA
CAGAGTAACGTGCGGCTGAATCTAGGTTGGGTGCGGCGGGTTGACCGAAA
CGGTGCATCTAATCCGCCTTGGCATTTTTTCAACGGCGGCACGACGAACA
CAACTACCGTGGCATGGGGGCTAAACTTCACAACACTCACGCTCTTGAGG
CCAGTTATAGCCGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1200:25799..26413+

>mRNA_H-canaliculatus_F_contig1200.1760.1 ID=mRNA_H-canaliculatus_F_contig1200.1760.1|Name=mRNA_H-canaliculatus_F_contig1200.1760.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1230bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1200:25799..26413+ (Hapterophycus canaliculatus Oshoro5f female)
GTTTTTCGGCGTCGTTCGTTCCGCCATGGTTGGTGCAAACAGATTTTGGG
ATTGGGGTCTGATTGGACAGGGTTCGACCGATTCTTGTTGATTCTGCGGT
CGGACAAGGAAAAAGATTTTGCTTTCATGACTCCAGAAAACCATGGTACG
CACGAACCACGCGTGTACGCTCTAGCTCGGGGGTTCAGGCGACTGCAAAC
CGTCCGTTTCAGGAGTTCGTTTATCTTTTTCTTCGCTCCAGAGAAAGCCA
TAAAGAAGAAAATGAGCTTTCTTGTCATGTTGTCGTGTTCTCGACTTCAT
ATCCTCGCAAAACAGCGGAACACGACAACTTTTGTCGGGGGTGTTCAAAC
GGTATGTACACGACAAGCACAAGCAATCAACACGTTCATCTTCCAGACGT
TACAGTACATCAAAGAGTTACGTTTTGATGCAGTCTCTCACAAAATGAGA
CAGAGTAACGTGCGGCTGAATCTAGGTTGGGTGCGGCGGGTTGACCGAAA
CGGTGCATCTAATCCGCCTTGGCATTTTTTCAACGGCGGCACGACGAACA
CAACTACCGTGGCATGGGGGCTAAACTTCACAACACTCACGCTCTTGAGG
CCAGTTATAGCCGACGTTTTTCGGCGTCGTTCGTTCCGCCATGGTTGGTG
CAAACAGATTTTGGGATTGGGGTCTGATTGGACAGGGTTCGACCGATTCT
TGTTGATTCTGCGGTCGGACAAGGAAAAAGATTTTGCTTTCATGACTCCA
GAAAACCATGGTACGCACGAACCACGCGTGTACGCTCTAGCTCGGGGGTT
CAGGCGACTGCAAACCGTCCGTTTCAGGAGTTCGTTTATCTTTTTCTTCG
CTCCAGAGAAAGCCATAAAGAAGAAAATGAGCTTTCTTGTCATGTTGTCG
TGTTCTCGACTTCATATCCTCGCAAAACAGCGGAACACGACAACTTTTGT
CGGGGGTGTTCAAACGGTATGTACACGACAAGCACAAGCAATCAACACGT
TCATCTTCCAGACGTTACAGTACATCAAAGAGTTACGTTTTGATGCAGTC
TCTCACAAAATGAGACAGAGTAACGTGCGGCTGAATCTAGGTTGGGTGCG
GCGGGTTGACCGAAACGGTGCATCTAATCCGCCTTGGCATTTTTTCAACG
GCGGCACGACGAACACAACTACCGTGGCATGGGGGCTAAACTTCACAACA
CTCACGCTCTTGAGGCCAGTTATAGCCGAC
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