mRNA_H-canaliculatus_F_contig10151.174.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10151.174.1
Unique NamemRNA_H-canaliculatus_F_contig10151.174.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10151.174.1 vs. uniprot
Match: D7G2C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C7_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.230e-55
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 1 
Query:    1 NPTFVFDELVVTHYCGSIGGLSGLVVTAITQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVAQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGEL 315
            NPTFVFDELVVTHYCGS GGL+GLVVTA+TQQAVAQGYKVVGSMELLGDPLSLV KLGDSV QFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITG L
Sbjct: 1122 NPTFVFDELVVTHYCGSAGGLTGLVVTALTQQAVAQGYKVVGSMELLGDPLSLVGKLGDSVVQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGSL 1226
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BLAST of mRNA_H-canaliculatus_F_contig10151.174.1 vs. uniprot
Match: A0A6H5KWU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU7_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 5.750e-55
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 1 
Query:    1 NPTFVFDELVVTHYCGSIGGLSGLVVTAITQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVAQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGEL 315
            NPTFVFDELVVTHYCGS GGL+GLVVTA+TQQAVAQGYKVVGSMELLGDPLSLV KLGDSV QFFTKTKAEMTGDADTVGAGAK+LVKGLVGGTFGSAAKITG L
Sbjct: 2783 NPTFVFDELVVTHYCGSAGGLTGLVVTALTQQAVAQGYKVVGSMELLGDPLSLVGKLGDSVVQFFTKTKAEMTGDADTVGAGAKLLVKGLVGGTFGSAAKITGSL 2887
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BLAST of mRNA_H-canaliculatus_F_contig10151.174.1 vs. uniprot
Match: A0A835YJU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU6_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.280e-29
Identity = 68/132 (51.52%), Postives = 80/132 (60.61%), Query Frame = 1 
Query:    1 NPTFVFDELVVTHYCGSIGGLSGLVVTAITQQAVAQGYK---------------------------VVGSMELLGDPLSLVSKLGDSVAQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGEL 315
            +PTFVFDEL+VTHY GS   L+  +   + QQ VAQGYK                           VVGSMELLGDPL+LV+KL DSV QF   T+AE  G+  T GAGA++LV G+VGG FGSAAKI G L
Sbjct:  320 SPTFVFDELLVTHYFGSARELAAALARGLVQQGVAQGYKXXXXXXXXXXXXXXXXXXXPGSERSYKVVGSMELLGDPLALVNKLSDSVLQFLRTTQAEFRGEEPTFGAGARMLVSGVVGGAFGSAAKIAGSL 451
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BLAST of mRNA_H-canaliculatus_F_contig10151.174.1 vs. uniprot
Match: A0A7S2GN42_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN42_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.840e-27
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:    1 NPTFVFDELVVTHYCGSIGGLSGLVVTAITQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVAQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITG 309
            NPTF F+EL +    G    L+  +  ++ +Q VAQGYKVVGSMELLGDP+SLVS +G  V QFF KT A+M G+++T G G K L +G+VGGTFGS AKITG
Sbjct:  274 NPTFQFNELKLADSFGQRWDLASSIFMSLVKQGVAQGYKVVGSMELLGDPVSLVSNMGVGVYQFFRKTGADMLGESETRGEGVKHLFQGVVGGTFGSVAKITG 376
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BLAST of mRNA_H-canaliculatus_F_contig10151.174.1 vs. uniprot
Match: W7U3K2_9STRA (Ph domain containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3K2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.840e-23
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    7 TFVFDELVVTHYCGSIGGLSGLVVTAITQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVAQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGEL 315
            T VF+EL+ THY GS   L  +VV ++ QQA+ Q YK++G+M+LLG+PL+L    G  V +FF +T+AE+ GDAD+ G G + L K ++GG F S +KITG +
Sbjct: 3988 TLVFNELLFTHYFGSHYDLGHIVVLSLRQQAITQSYKLLGAMDLLGNPLNLFLGFGSGVVEFFRRTQAELVGDADSKGEGLRRLAKAVIGGPFSSVSKITGTV 4090
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BLAST of mRNA_H-canaliculatus_F_contig10151.174.1 vs. uniprot
Match: A0A2P4WYB2_9STRA (Vacuolar protein sorting-associated protein 13a n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WYB2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.370e-17
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:    1 NPTFVFDELVVTHYCGSIGGLSGLVVTAITQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVAQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGEL 315
            +PTF F E+V+     +   L   +V    QQ V Q Y++VGS +++G+P+ LV  LG  V +F   TK E+TGDA T G G KVL K +V     S AKITG L
Sbjct:  169 SPTFSFSEIVIVRCFSTKQRLQSQLVANYVQQGVMQAYRLVGSADIIGNPIGLVEDLGSGVVEFLKITKGELTGDAQTRGEGVKVLGKTIVKSGASSVAKITGSL 273
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BLAST of mRNA_H-canaliculatus_F_contig10151.174.1 vs. uniprot
Match: W2QD77_PHYPN (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2QD77_PHYPN)

HSP 1 Score: 85.1 bits (209), Expect = 4.600e-17
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:    1 NPTFVFDELVVTHYCGSIGGLSGLVVTAITQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVAQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGEL 315
            +PTF F E+V+     +   L   +V    QQ V Q Y++VGS +++G+P+ LV  LG  V +F   TK E+TGDA T G G KVL K +V     S AKITG L
Sbjct: 2310 SPTFSFSEIVIVRCFSTKQRLQSQLVANYVQQGVMQAYRLVGSADIIGNPIGLVEDLGSGVVEFLKITKGELTGDAQTRGEGVKVLGKTIVKSGASSVAKITGSL 2414
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BLAST of mRNA_H-canaliculatus_F_contig10151.174.1 vs. uniprot
Match: G5AC94_PHYSP (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=G5AC94_PHYSP)

HSP 1 Score: 85.1 bits (209), Expect = 4.600e-17
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:    1 NPTFVFDELVVTHYCGSIGGLSGLVVTAITQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVAQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGEL 315
            +PTF F E+V+     +   L   +V    QQ V Q Y++VGS +++G+P+ LV  LG  V +F   TK E+TGDA T G G KVL K +V     S AKITG L
Sbjct: 2309 SPTFSFSEIVIVRCFSTKQRLQSQLVANYVQQGVMQAYRLVGSADIIGNPIGLVEDLGSGVVEFLKITKGELTGDAQTRGEGVKVLGKTIVKSGASSVAKITGSL 2413
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BLAST of mRNA_H-canaliculatus_F_contig10151.174.1 vs. uniprot
Match: A0A8J5IR68_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IR68_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.620e-17
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:    1 NPTFVFDELVVTHYCGSIGGLSGLVVTAITQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVAQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGEL 315
            +PTF F E+V+     +   L   +V    QQ V Q Y++VGS +++G+P+ LV  LG  V +F   TK E+TGDA T G G KVL K +V     S AKITG L
Sbjct: 2309 SPTFSFSEIVIVRCFSTKQRLQSQLVANYVQQGVMQAYRLVGSADIIGNPIGLVEDLGSGVVEFLKITKGELTGDAQTRGEGVKVLGKTIVKSGASSVAKITGSL 2413
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BLAST of mRNA_H-canaliculatus_F_contig10151.174.1 vs. uniprot
Match: A0A3F2RF94_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RF94_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.280e-17
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:    1 NPTFVFDELVVTHYCGSIGGLSGLVVTAITQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVAQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGEL 315
            +PTF F E+V+     +   L   +V    QQ V Q Y+++GS +++G+P+ LV  LG  V +F   TK E+TGDA T G G KVL K +V     S AKITG L
Sbjct: 2275 SPTFSFSEIVIVRCFSTKQRLQSQLVANYVQQGVMQAYRLIGSADIIGNPIGLVEDLGSGVVEFLKITKGELTGDAQTRGEGVKVLGKTIVKSGASSVAKITGSL 2379
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10151.174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2C7_ECTSI2.230e-5594.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWU7_9PHAE5.750e-5593.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJU6_9STRA7.280e-2951.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GN42_9STRA6.840e-2757.28Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
W7U3K2_9STRA2.840e-2348.54Ph domain containing protein n=4 Tax=Monodopsidace... [more]
A0A2P4WYB2_9STRA4.370e-1743.81Vacuolar protein sorting-associated protein 13a n=... [more]
W2QD77_PHYPN4.600e-1743.81Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
G5AC94_PHYSP4.600e-1743.81Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A8J5IR68_9STRA4.620e-1743.81Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A3F2RF94_9STRA6.280e-1742.86Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10151contigH-canaliculatus_F_contig10151:3467..4177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue9.4e-47
Seed eggNOG ortholog2880.D7G2C7
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K12486
KEGG ReactionR03656
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
EC6.1.1.5
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928644.39208-CDS-H-canaliculatus_F_contig10151:3466..36131622928644.39208-CDS-H-canaliculatus_F_contig10151:3466..3613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10151 3467..3613 -
1696845510.3074346-CDS-H-canaliculatus_F_contig10151:3466..36131696845510.3074346-CDS-H-canaliculatus_F_contig10151:3466..3613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10151 3467..3613 -
1622928644.4059675-CDS-H-canaliculatus_F_contig10151:4009..41771622928644.4059675-CDS-H-canaliculatus_F_contig10151:4009..4177Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10151 4010..4177 -
1696845510.3217673-CDS-H-canaliculatus_F_contig10151:4009..41771696845510.3217673-CDS-H-canaliculatus_F_contig10151:4009..4177Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10151 4010..4177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10151.174.1prot_H-canaliculatus_F_contig10151.174.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10151 3467..4177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10151.174.1

>prot_H-canaliculatus_F_contig10151.174.1 ID=prot_H-canaliculatus_F_contig10151.174.1|Name=mRNA_H-canaliculatus_F_contig10151.174.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=105bp
NPTFVFDELVVTHYCGSIGGLSGLVVTAITQQAVAQGYKVVGSMELLGDP
LSLVSKLGDSVAQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAK
ITGEL
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mRNA from alignment at H-canaliculatus_F_contig10151:3467..4177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10151.174.1 ID=mRNA_H-canaliculatus_F_contig10151.174.1|Name=mRNA_H-canaliculatus_F_contig10151.174.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=711bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10151:3467..4177- (Hapterophycus canaliculatus Oshoro5f female)
AACCCCACGTTCGTGTTCGACGAGCTCGTGGTGACCCACTACTGCGGCAG
CATCGGCGGCCTGTCCGGGCTGGTCGTGACGGCCATCACGCAGCAGGCCG
TGGCTCAGGGCTACAAGGTGGTCGGTTCTATGGAGCTGCTGGGCGACCCG
CTATCACTCGTCAGCAAGGTGCGCGCGTGTGTGTTCGCACCGGCGGTGGT
TGTGGACAGGGAAAGCGGCAAGTAGCGCGGCGTTTTTTTTTCATCTTGCT
GCAAAGTGCGTAGCTGTGGACCGCGGCCCCCTTAGCTCCTGAGGGCGGCG
TCCTTACGCCTGCCCACGCTCCGGCTCCGGCCCCGAGTTGTCGGCGAAGG
CCAGGCGTTGTTCCCCTTCCCCGAGCTCGCTCATGGAGCGAGCCGTAGGA
CCCGTTTGCAACGTGCTGCGTTCTTGAGGTCTCTGTTGTAACAACCTCTT
CGGTGCACCCTGGTAGTTCGTCAGGTAATGTAGCAGCAGCAGTAGCGCCC
GCAGGAGCTGCCTGACGTTGAACATTATCCGACCCCCCTGCCTTTGCTTT
TATTTCGCATGCAGCTGGGGGATAGTGTTGCCCAGTTCTTCACCAAGACC
AAGGCTGAGATGACCGGCGATGCTGACACCGTGGGGGCGGGGGCCAAGGT
GCTGGTCAAGGGGCTTGTGGGCGGCACGTTTGGTAGCGCCGCGAAGATCA
CCGGTGAGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10151:3467..4177-

>mRNA_H-canaliculatus_F_contig10151.174.1 ID=mRNA_H-canaliculatus_F_contig10151.174.1|Name=mRNA_H-canaliculatus_F_contig10151.174.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10151:3467..4177- (Hapterophycus canaliculatus Oshoro5f female)
AACCCCACGTTCGTGTTCGACGAGCTCGTGGTGACCCACTACTGCGGCAG
CATCGGCGGCCTGTCCGGGCTGGTCGTGACGGCCATCACGCAGCAGGCCG
TGGCTCAGGGCTACAAGGTGGTCGGTTCTATGGAGCTGCTGGGCGACCCG
CTATCACTCGTCAGCAAGAACCCCACGTTCGTGTTCGACGAGCTCGTGGT
GACCCACTACTGCGGCAGCATCGGCGGCCTGTCCGGGCTGGTCGTGACGG
CCATCACGCAGCAGGCCGTGGCTCAGGGCTACAAGGTGGTCGGTTCTATG
GAGCTGCTGGGCGACCCGCTATCACTCGTCAGCAAGCTGGGGGATAGTGT
TGCCCAGTTCTTCACCAAGACCAAGGCTGAGATGACCGGCGATGCTGACA
CCGTGGGGGCGGGGGCCAAGGTGCTGGTCAAGGGGCTTGTGGGCGGCACG
TTTGGTAGCGCCGCGAAGATCACCGGTGAGCTCCTGGGGGATAGTGTTGC
CCAGTTCTTCACCAAGACCAAGGCTGAGATGACCGGCGATGCTGACACCG
TGGGGGCGGGGGCCAAGGTGCTGGTCAAGGGGCTTGTGGGCGGCACGTTT
GGTAGCGCCGCGAAGATCACCGGTGAGCTC
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