mRNA_H-canaliculatus_F_contig11980.1732.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11980.1732.1
Unique NamemRNA_H-canaliculatus_F_contig11980.1732.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11980.1732.1 vs. uniprot
Match: A0A6H5JE47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE47_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.610e-36
Identity = 65/80 (81.25%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:  106 GEERRWIFVHWHTPASLRRLDYCR----GPFTPDFVKRSGGRPGYDPFVTKIRKSSVVVTSAGLLSSRCIPEKALKELGV 333
            G+E RWIFVHWHTPASLRRLDYCR    GPFTPDFVK+ GG+ GYDPFVTKIRKSSVVV+  GLLSSRCIPE+ LKELGV
Sbjct: 1697 GDEGRWIFVHWHTPASLRRLDYCRPPDRGPFTPDFVKKGGGKSGYDPFVTKIRKSSVVVSCEGLLSSRCIPERVLKELGV 1776
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11980.1732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JE47_9PHAE2.610e-3681.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11980contigH-canaliculatus_F_contig11980:3030..3651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size349
Cds size336
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11980.1732.1prot_H-canaliculatus_F_contig11980.1732.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11980 3043..3651 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928906.0444438-UTR-H-canaliculatus_F_contig11980:3029..30421622928906.0444438-UTR-H-canaliculatus_F_contig11980:3029..3042Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11980 3030..3042 -
1696845607.2456198-UTR-H-canaliculatus_F_contig11980:3029..30421696845607.2456198-UTR-H-canaliculatus_F_contig11980:3029..3042Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11980 3030..3042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928906.0547056-CDS-H-canaliculatus_F_contig11980:3042..32021622928906.0547056-CDS-H-canaliculatus_F_contig11980:3042..3202Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11980 3043..3202 -
1696845607.2550333-CDS-H-canaliculatus_F_contig11980:3042..32021696845607.2550333-CDS-H-canaliculatus_F_contig11980:3042..3202Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11980 3043..3202 -
1622928906.0693634-CDS-H-canaliculatus_F_contig11980:3475..36511622928906.0693634-CDS-H-canaliculatus_F_contig11980:3475..3651Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11980 3476..3651 -
1696845607.2725532-CDS-H-canaliculatus_F_contig11980:3475..36511696845607.2725532-CDS-H-canaliculatus_F_contig11980:3475..3651Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11980 3476..3651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11980.1732.1

>prot_H-canaliculatus_F_contig11980.1732.1 ID=prot_H-canaliculatus_F_contig11980.1732.1|Name=mRNA_H-canaliculatus_F_contig11980.1732.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
AASAAAGIAVASPRADNLAAGAGAGDGRAAASKSSGEERRWIFVHWHTPA
SLRRLDYCRGPFTPDFVKRSGGRPGYDPFVTKIRKSSVVVTSAGLLSSRC
IPEKALKELGV*
back to top

mRNA from alignment at H-canaliculatus_F_contig11980:3030..3651-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11980.1732.1 ID=mRNA_H-canaliculatus_F_contig11980.1732.1|Name=mRNA_H-canaliculatus_F_contig11980.1732.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=622bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11980:3030..3651- (Hapterophycus canaliculatus Oshoro5f female)
GCCGCCTCCGCCGCCGCCGGTATTGCCGTCGCGTCACCTAGGGCGGACAA
CCTTGCGGCGGGCGCGGGAGCTGGTGACGGTCGCGCCGCCGCCTCGAAGA
GCAGCGGGGAAGAGCGCCGGTGGATCTTCGTGCACTGGCATACCCCGGCA
AGCCTGCGGAGGCTGGACTACTGCAGGTGAGCAGGCCGGCGGCGCACGTA
TTCCTCTTGCTTTCGTCCGGTCCCTGCGACCTTTGCTCCCTCAGATAACG
GAAGCCCGTCGAAAGAGATGCTGCCACCACGCCGTCTGCGCGGGCCGGCG
GACGAGCGTTACAAGAGATAGGGCGCTCACGACTCTGCTCGATCCCGCCT
GCGTCGTCGTATCCGTAGACCCCCCCTCCCCCTCCTGCCCCCAGCTTGTA
ACCCCCGCTGTCAACCACCGGTGTGCCGTACTGCCGTCGAATCTCCCAGG
GGGCCCTTCACCCCGGACTTCGTCAAGAGGTCGGGGGGTAGGCCGGGGTA
CGACCCGTTCGTGACCAAGATCCGAAAATCCTCGGTGGTGGTGACGAGTG
CGGGGCTGCTGTCCAGCCGCTGCATCCCCGAGAAGGCTCTGAAGGAACTC
GGCGTGTGAATTCTTGGTTGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11980:3030..3651-

>mRNA_H-canaliculatus_F_contig11980.1732.1 ID=mRNA_H-canaliculatus_F_contig11980.1732.1|Name=mRNA_H-canaliculatus_F_contig11980.1732.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11980:3030..3651- (Hapterophycus canaliculatus Oshoro5f female)
GCCGCCTCCGCCGCCGCCGGTATTGCCGTCGCGTCACCTAGGGCGGACAA
CCTTGCGGCGGGCGCGGGAGCTGGTGACGGTCGCGCCGCCGCCTCGAAGA
GCAGCGGGGAAGAGCGCCGGTGGATCTTCGTGCACTGGCATACCCCGGCA
AGCCTGCGGAGGCTGGACTACTGCAGGCCGCCTCCGCCGCCGCCGGTATT
GCCGTCGCGTCACCTAGGGCGGACAACCTTGCGGCGGGCGCGGGAGCTGG
TGACGGTCGCGCCGCCGCCTCGAAGAGCAGCGGGGAAGAGCGCCGGTGGA
TCTTCGTGCACTGGCATACCCCGGCAAGCCTGCGGAGGCTGGACTACTGC
AGGGGGCCCTTCACCCCGGACTTCGTCAAGAGGTCGGGGGGTAGGCCGGG
GTACGACCCGTTCGTGACCAAGATCCGAAAATCCTCGGTGGTGGTGACGA
GTGCGGGGCTGCTGTCCAGCCGCTGCATCCCCGAGAAGGCTCTGAAGGAA
CTCGGCGTGTGAGGGGCCCTTCACCCCGGACTTCGTCAAGAGGTCGGGGG
GTAGGCCGGGGTACGACCCGTTCGTGACCAAGATCCGAAAATCCTCGGTG
GTGGTGACGAGTGCGGGGCTGCTGTCCAGCCGCTGCATCCCCGAGAAGGC
TCTGAAGGAACTCGGCGTGTGA
back to top